EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr8144440144Missense_Mutationrs189270359E453K0.26
BLCAchr8144434077SilentNAT1096T0.63
BLCAchr8144438497Missense_MutationnovelR543S0.2
BLCAchr8144442381Missense_Mutationrs547875792A204T0.1
BLCAchr8144442362In_Frame_DelnovelF202_T210del0.52
BLCAchr8144442056Missense_MutationnovelI282M0.25
BLCAchr8144432423Silentrs374357745N1199N0.14
BLCAchr8144435924Missense_MutationNAE837K0.33
BLCAchr8144440745SilentnovelL379L0.24
BLCAchr8144434100Missense_MutationNAE1089K0.19
BLCAchr8144442274SilentnovelF239F0.27
BRCAchr8144435472Splice_SitenovelX951_splice0.29
BRCAchr8144438757Intronnovel0.08
BRCAchr8144432423Silentrs374357745N1199N0.27
BRCAchr8144437064Missense_MutationnovelW563C0.11
BRCAchr8144436973Intronnovel0.22
BRCAchr8144440066Missense_MutationNAE479K0.2
BRCAchr8144443273Missense_MutationnovelE105Q0.48
CESCchr8144432346Missense_MutationNAS1225F0.13
CESCchr8144435767Missense_Mutationrs529030862A889V0.42
CESCchr8144434018Missense_Mutationrs782170769R1116H0.24
CESCchr8144436145Missense_Mutationrs776417303S763L0.56
CESCchr8144436619Frame_Shift_InsnovelE652Kfs*390.09
CESCchr8144433697Frame_Shift_InsnovelL1152Pfs*250.09
CESCchr8144434221Silentrs569596561S1048S0.13
CESCchr8144434161SilentnovelL1068L0.1
CESCchr8144434031Missense_MutationNAP1112T0.35
CESCchr8144434123Missense_Mutationrs782604369R1081Q0.35
CESCchr8144440108Missense_MutationNAE465K0.43
COADchr8144435346Intronnovel0.18
COADchr8144443905Missense_MutationnovelE81K0.24
COADchr8144434254Silentrs142494135A1037A0.22
COADchr8144442767Missense_MutationnovelR163H0.07
COADchr8144443136Splice_SitenovelX150_splice0.43
COADchr8144442768Missense_MutationNAR163C0.35
COADchr8144434162Missense_MutationNAL1068Q0.16
COADchr8144435093Missense_MutationnovelR977M0.05
COADchr8144433660Missense_Mutationrs781935858R1163C0.11
COADchr8144442380Missense_MutationNAA204V0.31
COADchr8144433659Missense_Mutationrs782299928R1163H0.34
COADchr8144442103Missense_MutationnovelK267E0.09
ESCAchr8144435539SilentnovelP929P0.16
ESCAchr8144440131Missense_MutationnovelR457L0.1
ESCAchr8144436978Intronnovel0.17
GBMchr8144441000Missense_MutationnovelD326G0.78
GBMchr8144435781Missense_MutationnovelM884I0.43
GBMchr8144436960Intronrs2006920300.32
GBMchr8144441014SilentnovelF321F0.47
GBMchr8144442708Missense_Mutationrs748017086D183N0.41
GBMchr8144432400Missense_MutationnovelA1207V0.65
GBMchr8144433660Missense_Mutationrs781935858R1163C0.1
GBMchr8144436630Missense_MutationNAD648N0.38
GBMchr8144435817SilentNAP872P0.3
HNSCchr8144436856SilentnovelE597E0.46
HNSCchr8144435816Missense_Mutationrs757192033R873C0.35
HNSCchr8144435817SilentNAP872P0.35
HNSCchr8144433659Missense_Mutationrs782299928R1163H0.08
HNSCchr8144433624Missense_MutationnovelL1175V0.11
HNSCchr8144432373Missense_MutationnovelG1216D0.11
HNSCchr8144432374Missense_Mutationrs200752425G1216S0.11
HNSCchr8144430500SilentnovelL1283L0.3
KICHchr8144436613Silentrs753823956T653T0.1
KICHchr8144442679Splice_Regionrs755618655A192A0.18
KIRCchr8144440840Missense_Mutationrs763201864G348R0.16
KIRCchr8144441045Missense_MutationNAM311K0.17
KIRPchr8144443205Missense_MutationNAR127S0.33
LGGchr8144434254Silentrs142494135A1037A0.29
LGGchr8144440453SilentnovelI396I0.42
LGGchr8144442382Silentrs569775648R203R0.4
LGGchr8144434148Missense_Mutationrs782040610R1073W0.17
LIHCchr8144435053Missense_MutationNAQ990H0.22
LIHCchr8144442776Missense_MutationnovelM160T0.31
LIHCchr8144441001Missense_MutationNAD326H0.45
LIHCchr8144443275Missense_MutationNAT104K0.32
LIHCchr8144434206SilentNAA1053A0.1
LUADchr8144436320Missense_MutationNAS705G0.07
LUADchr8144434183Missense_MutationNAP1061L0.39
LUADchr8144441072Missense_MutationnovelA302D0.28
LUADchr8144435766SilentnovelA889A0.22
LUADchr8144442257Missense_MutationnovelC245F0.3
LUADchr8144436343Missense_MutationNAP697R0.17
LUSCchr8144438477SilentNAV549V0.22
LUSCchr8144440168Frame_Shift_DelnovelR443Afs*60.13
LUSCchr8144442780Missense_MutationnovelE159K0.48
LUSCchr8144442286Missense_MutationnovelM235I0.09
LUSCchr8144435902Missense_Mutationrs200092098R844H0.28
LUSCchr8144432298Missense_MutationNAR1241L0.26
LUSCchr8144433622Silentrs782105382L1175L0.23
LUSCchr8144436420Splice_SitenovelX672_splice0.09
LUSCchr8144442376SilentNAR205R0.15
LUSCchr8144434147Missense_MutationNAR1073L0.41
LUSCchr8144435870Missense_MutationnovelD855H0.08
LUSCchr8144440819Missense_MutationNAH355Y0.34
LUSCchr8144435707Missense_MutationnovelP909H0.34
LUSCchr8144440150Missense_MutationNAE451Q0.27
LUSCchr8144436296Missense_MutationnovelQ713K0.21
LUSCchr8144438670SilentNAR516R0.44
OVchr8144440045Missense_MutationNAG486C0.27
OVchr8144442768Missense_MutationNAR163C0.05
OVchr8144430488Missense_MutationnovelP1287T0.23
PAADchr8144435016Splice_SitenovelX1002_splice0.29
PRADchr8144433654Nonsense_MutationnovelQ1165*0.15
PRADchr8144436575Missense_Mutationrs747508334A666V0.36
PRADchr8144442349Silentrs765218083R214R0.5
READchr8144436894Missense_Mutationrs747672856G585R0.4
READchr8144440391Missense_Mutationrs750087651A417V0.3
READchr8144442265Silentrs112264814S242S0.19
SARCchr8144435020Silentrs558700548D1001D0.9
SARCchr8144433691SilentnovelL1152L0.24
SARCchr8144435969Missense_MutationnovelA822T0.28
SARCchr8144443256Missense_MutationnovelW110C0.2
SARCchr8144433716Missense_MutationnovelG1144D0.25
SARCchr8144441007Missense_MutationnovelA324T0.28
SARCchr8144441008Silentrs141212804K323K0.28
SKCMchr8144436906SilentnovelL581L0.26
SKCMchr8144440424Missense_MutationnovelA406V0.75
SKCMchr8144436290Missense_MutationnovelH715Y0.3
SKCMchr8144436352Missense_MutationNAP694L0.09
SKCMchr8144436897Missense_MutationnovelH584Y0.09
SKCMchr8144441038SilentnovelI313I0.27
SKCMchr8144432437Missense_MutationNAS1195P0.59
SKCMchr8144436814Silentrs371923350F611F0.46
SKCMchr8144442075Missense_MutationnovelP276L0.24
SKCMchr8144436967Intronnovel0.31
SKCMchr8144435728Missense_Mutationrs758153285P902L0.23
SKCMchr8144436591Missense_MutationnovelE661K0.21
SKCMchr8144436592Missense_MutationnovelM660I0.23
SKCMchr8144442289SilentNAT234T0.36
SKCMchr8144434078Missense_MutationNAT1096I0.22
SKCMchr8144442268SilentNAE241E0.25
SKCMchr8144434050SilentNAL1105L0.38
SKCMchr8144434030Missense_MutationNAP1112H0.21
SKCMchr8144431103Missense_MutationnovelD1262Y0.64
SKCMchr8144432342SilentnovelV1226V0.26
SKCMchr8144433720Missense_MutationNAD1143Y0.29
SKCMchr8144436778Silentrs756598288S623S0.41
STADchr8144436776Missense_Mutationrs767859903V624A0.12
STADchr8144435666Nonsense_MutationNAQ923*0.11
STADchr8144436289Missense_MutationnovelH715R0.13
STADchr8144432423Silentrs374357745N1199N0.1
STADchr8144441096Missense_Mutationrs764909171R294Q0.18
STADchr8144440842Missense_Mutationrs752005007P347L0.09
STADchr8144435811SilentnovelA874A0.26
STADchr8144437037Silentrs750120871Y572Y0.14
STADchr8144436105Silentrs545590970P776P0.33
STADchr8144436894Missense_Mutationrs747672856G585R0.17
STADchr8144434841Missense_Mutationrs747175296Y1019H0.2
STADchr8144435763SilentNAP890P0.06
STADchr8144438720Missense_MutationNAG499D0.17
STADchr8144440384SilentNAS419S0.08
STADchr8144440867Missense_MutationNAR339C0.3
STADchr8144433638Missense_MutationnovelG1170D0.13
STADchr8144441001Missense_MutationNAD326H0.2
STADchr8144442296Missense_Mutationrs368498512A232V0.16
STADchr8144430439Missense_MutationNAK1303R0.29
STADchr8144440060Missense_Mutationrs146174683E481K0.09
STADchr8144432373Missense_MutationNAG1216V0.25
STADchr8144435070Frame_Shift_DelnovelA985Pfs*230.21
STADchr8144442254Missense_MutationnovelV246E0.65
STADchr8144440732Missense_Mutationrs201893250G384S0.26
STADchr8144438523Missense_MutationnovelH534R0.13
STADchr8144436997Intronnovel0.28
STADchr8144440406Frame_Shift_DelnovelP412Rfs*310.21
STADchr8144430411SilentNAG1312G0.25
THCAchr8144438696Missense_MutationnovelD507V0.25
THYMchr8144438553Missense_MutationnovelR524Q0.13
UCECchr8144433659Missense_Mutationrs782299928R1163H0.36
UCECchr8144440045Missense_Mutationrs565607454G486S0.23
UCECchr8144435667SilentNAG922G0.5
UCECchr8144442704Missense_MutationnovelY184C0.45
UCECchr8144438673Missense_MutationnovelG515S0.42
UCECchr8144435342IntronNA0.33
UCECchr8144436885Missense_MutationNAV588L0.32
UCECchr8144443167Missense_MutationNAS140N0.21
UCECchr8144435809Missense_Mutationrs147256304R875Q0.35
UCECchr8144440831Missense_Mutationrs753001104R351W0.46
UCECchr8144440202SilentnovelV433V0.21
UCECchr8144443285Missense_Mutationrs200649272R101C0.11
UCECchr8144436937Intronrs7618341470.33
UCECchr8144438491Missense_Mutationrs202000622V545I0.13
UCECchr8144436843Frame_Shift_DelNAL602Sfs*410.24
UCECchr8144436614Missense_Mutationrs755055463T653M0.39
UCECchr8144438491Missense_Mutationrs202000622V545I0.28
UCECchr8144441011Silentrs756218352S322S0.06
UCECchr8144436635Missense_Mutationrs771375609R646H0.27
UCECchr8144433592SilentnovelF1185F0.58
UCECchr8144440100Missense_MutationnovelE467D0.34
UCECchr8144436273SilentNAP720P0.25
UCECchr8144442238Splice_Regionnovel0.29
UCECchr8144431120Missense_MutationnovelS1256Y0.11
UCECchr8144436782Missense_MutationnovelA622V0.45
UCECchr8144438532Missense_MutationnovelT531I0.33
UCECchr8144443284Missense_MutationnovelR101H0.32
UCECchr8144434019Missense_Mutationrs782353998R1116C0.33
UCECchr8144436768Missense_Mutationrs751754276R627C0.4
UCECchr8144434019Missense_Mutationrs782353998R1116C0.28
UCECchr8144440022Splice_RegionnovelG493G0.42
UCECchr8144436814Silentrs371923350F611F0.5
UCECchr8144436859Silentrs750764114C596C0.36
UCECchr8144435392Intronnovel0.13
UCECchr8144435679SilentnovelS918S0.47
UCECchr8144442064Missense_Mutationrs566845306A280T0.59
UCECchr8144436028Missense_MutationnovelA802V0.53
UCECchr8144438741Splice_Regionnovel0.4
UCECchr8144430533Missense_MutationnovelL1272I0.1
UCECchr8144435845Missense_MutationnovelS863Y0.31
UCECchr8144440057Missense_MutationnovelA482T0.35
UCECchr8144440737Missense_Mutationrs370126528R382H0.27
UCECchr8144436978Intronnovel0.45
UCSchr8144436043Missense_Mutationrs376067225R797Q0.8

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCAMP0.250.018626
KIRCAMP0.11740.15559
LGGDEL0.04870.014004
SARCAMP0.2490.18425
SKCMAMP0.44692.8957e-05
TGCTAMP0.560.13696
UVMAMP0.73758.8879e-13

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

STAD0.024

Kaplan-Meier Survival Analysis

SARC0.0001

Kaplan-Meier Survival Analysis

MESO0.00011

Kaplan-Meier Survival Analysis

ACC0.00017

Kaplan-Meier Survival Analysis

SKCM0.003

Kaplan-Meier Survival Analysis

LUSC0.012

Kaplan-Meier Survival Analysis

KIRP0.00011

Kaplan-Meier Survival Analysis

COAD0.044

Kaplan-Meier Survival Analysis

PCPG0.046

Kaplan-Meier Survival Analysis

LAML0.003

Kaplan-Meier Survival Analysis

KICH0.02

Kaplan-Meier Survival Analysis

UCEC0.0087

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

DLBC0.042

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

THCA0.035

Kaplan-Meier Survival Analysis

LUAD0.0055

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000160949 (Gene tree)
Gene ID
4796
Gene Symbol
TONSL
Alias
IKBR|NFKBIL2
Full Name
tonsoku like, DNA repair protein
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
15,714 bases
Position
chr8:144,428,775-144,444,488
Accession
7801
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is thought to be a negative regulator of NF-kappa-B mediated transcription. The encoded protein may bind NF-kappa-B complexes and trap them in the cytoplasm, preventing them from entering the nucleus and interacting with the DNA. Phosphorylation of this protein targets it for degradation by the ubiquitination pathway, which frees the NF-kappa-B complexes to enter the nucleus. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000497613TONSL-2026607--- (aa)--
ENST00000409379TONSL-2014502XM_011517048ENSP000003862391378 (aa)XP_011515350Q96HA7
ENST00000613741TONSL-2031713-ENSP00000484162477 (aa)-A0A087X1F6
Gene Model
Click here to download ENSG00000160949's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000160949's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000724double-strand break repair via homologous recombination21055983.21055984.21055985.IMPProcess
GO:0003714transcription corepressor activity7738005.TASFunction
GO:0005515protein binding21055983.21055984.21055985.21113133.IPIFunction
GO:0005654nucleoplasm-IDAComponent
GO:0005662DNA replication factor A complex21055983.IDAComponent
GO:0005737cytoplasm-IEAComponent
GO:0016604nuclear body-IDAComponent
GO:0031297replication fork processing21055983.21055984.21055985.IMPProcess
GO:0035101FACT complex21055983.IDAComponent
GO:0042393histone binding21055983.21055984.IDAFunction
GO:0042555MCM complex21055983.21055984.IDAComponent
GO:0042994cytoplasmic sequestering of transcription factor7738005.TASProcess
GO:0043596nuclear replication fork21055983.21055984.IDAComponent
GO:1903507negative regulation of nucleic acid-templated transcription-IEAProcess
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us