EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr345968533SilentnovelV267V0.33
BLCAchr345967405Silentrs200743505Q643Q0.57
BLCAchr345965104Missense_MutationNAS1027C0.23
BLCAchr345967543Missense_MutationnovelE597D0.15
BLCAchr345966963Nonsense_MutationnovelQ791*0.36
BLCAchr345966313SilentNAL1007L0.33
BLCAchr345984856Missense_MutationnovelD19H0.31
BLCAchr345959516Nonsense_MutationnovelS1155*0.22
BLCAchr345959422SilentnovelF1186F0.39
BRCAchr345966384Missense_MutationNAQ984E0.18
BRCAchr345923760SilentnovelL1419L0.07
BRCAchr345966786Missense_MutationNAE850Q0.11
BRCAchr345967222SilentNAS704S0.07
BRCAchr345968679Missense_MutationNAD219H0.28
BRCAchr345984854Splice_SitenovelX19_splice0.14
BRCAchr345966581Missense_MutationNAE918A0.26
BRCAchr345984903Missense_MutationnovelS3C0.08
BRCAchr345962270Missense_Mutationrs140583835N1131T0.05
BRCAchr345966589SilentNAL915L0.1
BRCAchr345931163Missense_MutationNAT1387A0.18
CESCchr345967810SilentnovelV508V0.32
CESCchr345967093SilentNAL747L0.4
CESCchr345958472Missense_MutationNAS1245R0.38
CESCchr345966874SilentnovelL820L0.8
CESCchr345967497Missense_MutationNAE613K0.47
CESCchr345968325SilentnovelL337L0.41
CESCchr345968490Missense_Mutationrs201358723R282C0.43
CESCchr345968580Missense_Mutationrs774439678R252C0.4
CESCchr345973180SilentnovelD149D0.38
CESCchr345967476Missense_MutationNAE620K0.38
CESCchr345923715In_Frame_DelnovelI1432_G1434del0.24
CESCchr345967311Missense_MutationnovelD675N0.38
CHOLchr3459215873'UTRnovel0.83
COADchr345936494Missense_Mutationrs759599621V1332M0.59
COADchr345955364Missense_Mutationrs748475750D1277N0.35
COADchr345931117Missense_MutationNAS1402N0.23
COADchr345966599Missense_MutationnovelV912A0.12
COADchr345931271Missense_MutationnovelP1351S0.29
COADchr345921820Missense_MutationnovelF1461C0.15
COADchr345968282Missense_MutationnovelL351P0.24
COADchr3459215853'UTRnovel0.47
COADchr345969703Missense_MutationNAM201T0.18
COADchr3459216983'UTRnovel0.31
COADchr345967585Missense_MutationNAE583D0.37
COADchr345967919Missense_Mutationrs533441275R472Q0.31
COADchr345923673Silentrs202242942F1448F0.08
COADchr345975241Splice_RegionNAT131T0.19
COADchr345967082Frame_Shift_InsNAK751Rfs*120.42
COADchr345923678Missense_MutationnovelI1447V0.55
COADchr345968586Missense_Mutationrs142017802R250W0.47
COADchr345967952Missense_MutationNAG461V0.21
COADchr345931251Silentrs373785569I1357I0.11
COADchr345931241Missense_Mutationrs149020169G1361R0.29
GBMchr345968029SilentnovelL435L0.14
GBMchr345931274Missense_MutationnovelV1350I0.21
GBMchr345973184Missense_Mutationrs149818406S148L0.43
GBMchr345962253Missense_MutationnovelL1137F0.11
HNSCchr345966682Silentrs771633712S884S0.33
HNSCchr345966683Missense_MutationnovelS884F0.3
HNSCchr345958562Silentrs751989736H1215H0.38
HNSCchr345968162Missense_MutationnovelP391R0.13
HNSCchr3459849215'UTRnovel0.5
HNSCchr345966790SilentnovelC848C0.3
HNSCchr345967783SilentnovelF517F0.24
KIRPchr345967332Missense_MutationNAA668T0.43
KIRPchr345931077Missense_MutationnovelQ1415H0.37
KIRPchr345958595Nonsense_MutationNAY1204*0.54
KIRPchr345968365Missense_MutationNAE323D0.22
KIRPchr345968476SilentNAE286E0.24
LAMLchr345973229Missense_MutationnovelD133G0.05
LGGchr345973129Silentrs149291592S166S0.25
LGGchr3459216883'UTRnovel0.46
LGGchr345923702Missense_Mutationrs779810632R1439C0.41
LGGchr345967174SilentnovelQ720Q0.08
LGGchr345981678Splice_SiteNAX19_splice0.48
LIHCchr345967082Missense_MutationnovelK751R0.29
LIHCchr345959438Missense_Mutationrs764117873D1181G0.3
LIHCchr345965107Missense_MutationNAK1026E0.22
LIHCchr345969764Missense_Mutationrs773759736R181G0.52
LIHCchr345936450Splice_RegionnovelL1346L0.55
LIHCchr345968604Missense_MutationnovelV244M0.4
LIHCchr345967149Nonsense_MutationNAE729*0.08
LUADchr345931175Missense_Mutationrs184524046E1383K0.16
LUADchr345968023Silentrs756216367L437L0.06
LUADchr345966936Missense_Mutationrs200646936R800W0.31
LUADchr345967834Missense_MutationnovelE500D0.08
LUADchr345967590Missense_MutationNAQ582K0.09
LUADchr345979734Missense_MutationNAG87W0.29
LUADchr345966540Missense_MutationNAE932Q0.16
LUADchr345967765SilentNAA523A0.24
LUADchr345967242Missense_MutationNAK698E0.11
LUADchr345965103Missense_MutationNAS1027I0.08
LUADchr345981635Nonsense_MutationNAE33*0.11
LUADchr345931240Missense_MutationnovelG1361V0.44
LUADchr345973161Nonsense_MutationNAE156*0.42
LUADchr345967770SilentNAL522L0.33
LUADchr345966585Missense_MutationnovelV917L0.24
LUADchr345968186Missense_MutationnovelS383L0.09
LUSCchr345966587Missense_MutationnovelT916I0.19
LUSCchr345967803Missense_MutationnovelL511V0.04
LUSCchr345967448Missense_MutationnovelV629A0.12
LUSCchr345968600Missense_MutationNAR245L0.43
LUSCchr345936544Splice_SitenovelX1315_splice0.34
LUSCchr345955358Missense_MutationnovelV1279L0.25
LUSCchr345967141Missense_MutationnovelR731S0.4
LUSCchr345973183SilentnovelS148S0.22
LUSCchr345959409Missense_Mutationrs773967962R1191W0.66
LUSCchr345967674Nonsense_MutationnovelE554*0.56
LUSCchr345979771SilentnovelF74F0.15
LUSCchr345968145Missense_MutationnovelA397S0.42
LUSCchr345967108SilentnovelQ742Q0.2
OVchr345962382Nonsense_MutationnovelE1094*0.07
OVchr345962330Missense_MutationNAQ1111R0.28
OVchr345955331SilentnovelL1288L0.08
OVchr345962299Missense_MutationnovelQ1121H0.05
OVchr345962292Missense_MutationnovelL1124F0.07
PAADchr345966542Missense_MutationnovelQ931R0.1
PAADchr345966862Missense_MutationnovelK824N0.08
PAADchr345967014Missense_MutationnovelS774P0.2
PAADchr345968270Missense_Mutationrs764385006R355Q0.21
PRADchr345979709Missense_MutationNAS95L0.28
READchr345975302Missense_MutationnovelS111F0.38
READchr345967805Missense_MutationnovelS510Y0.19
READchr345973165SilentnovelL154L0.4
SARCchr345973146Nonsense_MutationnovelQ161*0.15
SARCchr3459217163'UTRnovel0.53
SKCMchr345967598Missense_MutationNAS579F0.31
SKCMchr345968307Missense_MutationNAM343V0.26
SKCMchr345968375Missense_MutationNAQ320L0.44
SKCMchr345967888SilentNAS482S0.42
SKCMchr345931268Missense_MutationNAL1352F0.23
SKCMchr345981576SilentNAL52L0.18
SKCMchr345968008SilentNAR442R0.08
SKCMchr345979710Missense_MutationNAS95A0.31
SKCMchr345984878SilentnovelQ11Q0.41
SKCMchr345968226Missense_MutationnovelG370C0.17
SKCMchr345967254Nonsense_MutationNAQ694*0.54
SKCMchr345967917SilentNAL473L0.22
SKCMchr345973127Missense_MutationnovelR167K0.22
SKCMchr345973129Silentrs149291592S166S0.13
SKCMchr345968260SilentNAL358L0.19
SKCMchr345973130Missense_MutationNAS166L0.54
SKCMchr345966637SilentnovelH899H0.21
SKCMchr345967609SilentNAV575V0.33
SKCMchr345967230SilentnovelL702L0.39
SKCMchr345967822SilentNAL504L0.11
SKCMchr345959529Missense_Mutationrs375082007L1151F0.55
SKCMchr345966985SilentNAG783G0.27
SKCMchr345966978Nonsense_MutationNAQ786*0.38
SKCMchr345931123Missense_MutationNAS1400F0.19
SKCMchr345969680SilentNAL209L0.36
SKCMchr345981644Missense_MutationNAE30K0.37
SKCMchr345968057Missense_MutationnovelA426V0.48
STADchr345923702Missense_Mutationrs779810632R1439C0.39
STADchr345966577Missense_MutationnovelK919N0.17
STADchr345966975Missense_Mutationrs200040076R787W0.18
STADchr345966767Missense_MutationNAQ856R0.29
STADchr345967213Silentrs761520600G707G0.08
STADchr345968012Missense_Mutationrs781455175A441V0.3
STADchr345967287Missense_MutationNAA683P0.05
STADchr345969714SilentNAR197R0.32
STADchr345973132Silentrs139730012A165A0.3
STADchr345966747Missense_MutationnovelA863T0.24
STADchr345966586Silentrs142981160T916T0.1
STADchr345967546Missense_MutationNAQ596H0.3
STADchr345967600Missense_MutationNAN578K0.22
STADchr345967517Missense_MutationNAQ606R0.05
STADchr345967859Missense_MutationNAR492Q0.07
STADchr345975306Missense_Mutationrs570357544Y110H0.21
STADchr345966529Silentrs559343345D935D0.22
STADchr345923727In_Frame_Delrs774142616E1430del0.3
STADchr345967213Silentrs761520600G707G0.13
STADchr345968465Missense_Mutationrs146311777R290H0.28
THCAchr345966787SilentnovelS849S0.22
THYMchr3459180243'UTRnovel0.4
UCECchr345955361Missense_MutationNAA1278T0.34
UCECchr345964389Silentrs759277391A1072A0.24
UCECchr345955361Missense_MutationNAA1278T0.45
UCECchr345968627Missense_Mutationrs143360825R236Q0.4
UCECchr345975256Missense_MutationNAM126I0.29
UCECchr345981572Missense_MutationNAQ54K0.29
UCECchr345962316Missense_Mutationrs752948012R1116C0.31
UCECchr3459208533'UTRnovel0.33
UCECchr345967447Silentrs140372149V629V0.43
UCECchr3459849575'UTRnovel0.34
UCECchr345923702Missense_Mutationrs779810632R1439C0.23
UCECchr345962377Silentrs566962787L1095L0.26
UCECchr345981601Missense_MutationNAK44T0.34
UCECchr3459154343'Flanknovel0.47
UCECchr3459182843'UTRnovel0.64
UCECchr3459207213'UTRnovel0.42
UCECchr3459215773'UTRnovel0.55
UCECchr345968656Silentrs140730556N226N0.17
UCECchr345966327Missense_MutationNAL1003I0.36
UCECchr345968010Missense_Mutationrs758169793R442W0.32
UCECchr345979746Nonsense_MutationnovelG83*0.44
UCECchr345966334Silentrs749895806L1000L0.31
UCECchr345967989Missense_MutationnovelV449M0.28
UCECchr3459216333'UTRnovel0.37
UCECchr345966847SilentnovelQ829Q0.35
UCECchr3459156663'Flanknovel0.33
UCECchr3459182053'UTRnovel0.09
UCECchr345959406Missense_MutationNAR1192W0.26
UCECchr345966553SilentNAA927A0.15
UCECchr345968043Missense_MutationNAL431M0.23
UCECchr345968537Missense_MutationnovelA266D0.08
UCECchr345969734Missense_MutationNAL191M0.1
UCECchr345966417Missense_Mutationrs369064639G973S0.54
UCECchr345931098SilentNAA1408A0.36
UCECchr3459215733'UTRnovel0.47
UCECchr345964390Missense_Mutationrs148445016A1072V0.44
UCECchr345966472SilentNAL954L0.3
UCECchr345967259Missense_MutationNAK692R0.4
UCECchr3459155633'Flankrs726229220.41
UCECchr345975309Missense_MutationNAR109C0.45
UCECchr345966553SilentNAA927A0.15
UCECchr345967489SilentnovelR615R0.12
UCECchr345968422SilentnovelV304V0.2
UCECchr345966372Missense_Mutationrs752559420R988W0.36
UCECchr345966504Nonsense_Mutationrs755404037R944*0.27
UCECchr345968579Missense_Mutationrs199708461R252H0.49
UCECchr345985020Splice_Regionnovel0.28
UCECchr345923680Missense_MutationnovelL1446P0.08
UCECchr345966832Missense_MutationnovelN834K0.36
UCECchr345966524Missense_MutationnovelK937T0.67
UCECchr345967531Silentrs766544615D601D0.29
UCECchr3459206143'UTRnovel0.5
UCECchr345967112Missense_MutationnovelT741I0.36
UCECchr345968317SilentnovelR339R0.22
UCECchr345981653Missense_MutationnovelE27K0.43
UCECchr3459179053'UTRnovel0.33
UCECchr345966582Nonsense_MutationnovelE918*0.65
UCECchr345958611Missense_MutationnovelG1199D0.41
UCECchr3459156503'Flanknovel0.33
UCECchr345984876Missense_MutationnovelR12I0.38
UCECchr345955329Missense_MutationnovelL1288F0.4
UCECchr345967209Missense_Mutationrs775675242C709R0.38
UCECchr345923673Silentrs202242942F1448F0.43
UCECchr345958577Silentrs751074781Y1210Y0.48
UCECchr345967006Silentrs368345401A776A0.31
UCECchr345921836Missense_MutationnovelV1456F0.33
UCECchr345968580Missense_Mutationrs774439678R252C0.33
UCECchr345975309Missense_MutationNAR109C0.26
UCECchr345967671Missense_Mutationrs557259410R555W0.29
UCECchr345967290SilentNAL682L0.27
UCECchr345975297Missense_MutationNAV113L0.31
UCECchr3459849315'UTRnovel0.28
UCECchr345968263SilentnovelS357S0.22
UCECchr3459216863'UTRnovel0.14
UCECchr345966891Missense_MutationnovelM815V0.44
UCECchr3459154593'Flanknovel0.1
UCECchr345968395Missense_MutationnovelK313N0.39
UCECchr3459205633'UTRnovel0.36
UCECchr345967146Missense_MutationnovelL730I0.12
UCECchr345979811Missense_MutationnovelA61V0.21
UCECchr345959430Missense_Mutationrs760469053R1184W0.28
UCECchr3459131613'Flanknovel0.34
UCECchr345973200Nonsense_MutationNAQ143*0.38
UCECchr345921818Missense_MutationNAY1462H0.52
UCECchr345966788Missense_Mutationrs766344445S849L0.28
UCECchr345967923Nonsense_Mutationrs768945306R471*0.44
UCECchr345981653Nonsense_MutationNAE27*0.07
UCECchr345984907Missense_MutationNAA2P0.1
UCECchr345962274Missense_MutationnovelL1130I0.15
UCECchr345966529Silentrs559343345D935D0.31
UCECchr345966594Missense_MutationnovelA914T0.37
UCECchr3459215973'UTRnovel0.29
UCECchr345967287Missense_MutationnovelA683S0.4
UCECchr345968271Missense_Mutationrs35937665R355W0.13
UCECchr3459206133'UTRnovel0.44
UCECchr345968088Missense_MutationnovelK416E0.34
UCECchr345968271Missense_Mutationrs35937665R355W0.27
UCECchr345968358Missense_Mutationrs752168800A326T0.24
UCECchr345968490Missense_Mutationrs201358723R282C0.34
UCECchr3459209553'UTRrs7784203990.3
UCECchr345975309Missense_MutationNAR109C0.48

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CHOLDEL0.80560.02241
DLBCDEL0.1250.016959
GBMDEL0.07630.056565
LGGDEL0.08190.00089193
LUADDEL0.33530.0021265
PAADDEL0.17930.030662
SARCDEL0.19840.0034746
SKCMDEL0.16350.13887
TGCTDEL0.20.08422
THYMDEL0.08940.037527

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

SARC0.02

Kaplan-Meier Survival Analysis

MESO0.00017

Kaplan-Meier Survival Analysis

ACC0.00077

Kaplan-Meier Survival Analysis

HNSC0.036

Kaplan-Meier Survival Analysis

ESCA0.035

Kaplan-Meier Survival Analysis

KIRP0.0034

Kaplan-Meier Survival Analysis

LAML0.0059

Kaplan-Meier Survival Analysis

UCEC0.0068

Kaplan-Meier Survival Analysis

LUAD0.00032

Kaplan-Meier Survival Analysis

UVM0.018

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000163820 (Gene tree)
Gene ID
79443
Gene Symbol
FYCO1
Alias
FLJ13335|ZFYVE7
Full Name
FYVE and coiled-coil domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
77,926 bases
Position
chr3:45,917,899-45,995,824
Accession
14673
RBP type
non-canonical RBP
Summary
This gene encodes a protein that contains a RUN domain, FYVE-type zinc finger domain and Golgi dynamics (GOLD) domain. The encoded protein plays a role in microtubule plus end-directed transport of autophagic vesicles through interactions with the small GTPase Rab7, phosphatidylinositol-3-phosphate (PI3P) and the autophagosome marker LC3. Mutations in this gene are a cause of autosomal recessive congenital cataract-2 (CATC2). [provided by RefSeq, Dec 2011]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000535325FYCO1-2058578-ENSP000004411781498 (aa)-Q9BQS8
ENST00000433878FYCO1-2024317-ENSP00000388136267 (aa)-H7BZ74
ENST00000438446FYCO1-2031072-ENSP00000398517149 (aa)-C9J2W6
ENST00000471739FYCO1-204545--- (aa)--
ENST00000296137FYCO1-2018504XM_006713333ENSP000002961371478 (aa)XP_006713396Q9BQS8
Gene Model
Click here to download ENSG00000163820's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000163820Behcet Syndrome8.01603721286302E-0520622878
ENSG00000163820monocyte chemoattractant protein 1 (66-77)9.7100000E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000163820rs202063506345984720ATMonocyte chemoattractant protein-1 levels27989323[0.089-0.154] SD units increase0.1215EFO_0004749
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000163820's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding20100911.20562859.23455924.24089205.25855459.IPIFunction
GO:0005764lysosome21873635.IBAComponent
GO:0005764lysosome20100911.IDAComponent
GO:0005770late endosome21873635.IBAComponent
GO:0005770late endosome20100911.IDAComponent
GO:0005776autophagosome21873635.IBAComponent
GO:0005776autophagosome20100911.IDAComponent
GO:0005794Golgi apparatus-IDAComponent
GO:0016020membrane19946888.HDAComponent
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0046872metal ion binding-IEAFunction
GO:0072383plus-end-directed vesicle transport along microtubule21873635.IBAProcess
GO:0072383plus-end-directed vesicle transport along microtubule20100911.IMPProcess
GO:1901098positive regulation of autophagosome maturation21873635.IBAProcess
GO:1901098positive regulation of autophagosome maturation26468287.IMPProcess
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