EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
21931648Genetic evidence supporting the association of protease and protease inhibitor genes with inflammatory bowel disease: a systematic review.PLoS One2011Cleynen Idoi: 10.1371/journal.pone.0024106

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr349678913SilentNAQ374Q0.06
BLCAchr3496743785'UTRnovel0.56
BLCAchr349676178Missense_Mutationrs761116888D189N0.12
BLCAchr349678868SilentnovelI359I0.39
BLCAchr349682706Missense_MutationnovelS618F0.13
BLCAchr349682707SilentnovelS618S0.13
BLCAchr3496833933'UTRrs7718980400.14
BLCAchr349681218Missense_MutationNAE473Q0.48
BLCAchr349676375Splice_Regionnovel0.14
BRCAchr349675288Missense_MutationnovelN84S0.09
CESCchr349681788Missense_MutationnovelM502K0.36
CESCchr349683274Missense_MutationnovelE711Q0.41
CESCchr349675253Silentrs761871519D72D0.45
CESCchr3496839553'UTRnovel0.53
COADchr349681903SilentNAS513S0.26
COADchr349683238Missense_MutationNAL699F0.42
COADchr349675756Missense_Mutationrs767157178T112M0.31
COADchr349681724Missense_MutationNAG481S0.27
COADchr349676962Missense_Mutationrs147426925R313C0.33
COADchr3496833503'UTRnovel0.49
COADchr349681169SilentNAE456E0.36
COADchr349682846Silentrs374746175C629C0.41
COADchr349675253Silentrs761871519D72D0.16
COADchr349681886Splice_SiteNAX509_splice0.31
COADchr349676133Missense_MutationNAE174K0.11
COADchr349681886Splice_SiteNAX509_splice0.12
COADchr349681892Frame_Shift_DelNAH511Ifs*240.24
COADchr349676694Missense_Mutationrs758011278N277S0.09
COADchr349676446Silentrs138376291C225C0.06
COADchr349675935Silentrs756326423A137A0.29
DLBCchr349681109SilentnovelG436G0.31
ESCAchr349676175Missense_Mutationrs374901664D188N0.52
ESCAchr349679596Missense_MutationnovelL388V0.27
ESCAchr349676682Missense_MutationnovelR273L0.55
GBMchr349676143Missense_MutationnovelF177C0.11
GBMchr349680622Missense_MutationnovelP431L0.13
HNSCchr349681892Frame_Shift_DelNAH511Ifs*240.2
HNSCchr349678870Missense_MutationnovelY360F0.18
KIRPchr349683256Missense_MutationNAS705G0.17
KIRPchr3496839513'UTRnovel0.38
KIRPchr349680586Missense_MutationNAL419P0.26
LAMLchr349676620SilentnovelA252A0.18
LGGchr349683238Missense_MutationnovelL699I0.09
LIHCchr349683052SilentNAL667L0.45
LIHCchr3496743915'UTRnovel0.7
LIHCchr349682604Missense_MutationNAM584T0.18
LIHCchr349681762SilentNAS493S0.13
LUADchr349683330Missense_MutationNAH729Q0.18
LUSCchr349676198SilentNAK195K0.63
LUSCchr349682613Missense_MutationNAS587F0.37
LUSCchr349682559Missense_MutationnovelQ569L0.13
LUSCchr349676182Frame_Shift_DelnovelI191Pfs*30.1
MESOchr349682855Missense_MutationnovelE632D0.09
OVchr349682864In_Frame_InsnovelF635_P636insTGPAW0.18
OVchr349676161Missense_MutationNAD183V0.26
OVchr349681228Missense_MutationnovelN476T0.14
OVchr349681187Missense_MutationnovelH462Q0.18
PAADchr349676627Missense_MutationnovelD255N0.21
PAADchr349682402Missense_MutationnovelG553D0.15
PRADchr349675303Frame_Shift_DelNAE91Nfs*30.3
PRADchr349683083Missense_Mutationrs749450590R677H0.31
READchr349682586Missense_MutationNAA578V0.17
READchr349682674Silentrs377618583C607C0.34
READchr349682578SilentNAH575H0.21
SARCchr349680557Missense_MutationnovelS409R0.43
SARCchr349676682Missense_MutationnovelR273H0.09
SKCMchr349676921Missense_MutationNAS299F0.35
SKCMchr349676681Missense_Mutationrs571736407R273C0.44
SKCMchr349682613Missense_MutationNAS587F0.55
SKCMchr3496833863'UTRrs5334436490.27
SKCMchr3496834193'UTRnovel0.32
SKCMchr349682865Missense_MutationNAP636S0.31
SKCMchr349681172SilentNAP457P0.12
SKCMchr349676938Missense_MutationNAP305S0.32
SKCMchr349676668SilentNAF268F0.35
SKCMchr349675247SilentNAF70F0.17
SKCMchr349675781SilentNAF120F0.32
SKCMchr349683105Missense_MutationnovelM684I0.4
SKCMchr349682925Missense_MutationnovelP656S0.11
SKCMchr349682926Missense_MutationnovelP656L0.11
SKCMchr349676053Splice_Regionnovel0.34
STADchr349678945Missense_Mutationrs145125345R385Q0.21
STADchr349675303Frame_Shift_DelNAE91Nfs*30.17
STADchr349681886Splice_SiteNAX509_splice0.36
STADchr349676162Silentrs769546586D183D0.22
STADchr349676994Frame_Shift_DelnovelH325Ifs*210.34
STADchr3496833873'UTRrs7454828050.47
STADchr349682640Frame_Shift_InsnovelI597Dfs*280.06
STADchr349676963Missense_MutationNAR313H0.31
STADchr349681728Missense_MutationNAL482P0.11
STADchr349681886Splice_SiteNAX509_splice0.18
STADchr3496833823'UTRrs3713975190.24
STADchr349677570Splice_Regionnovel0.19
UCECchr349675221Nonsense_Mutationrs577640330R62*0.42
UCECchr349675262SilentnovelS75S0.18
UCECchr349676160Missense_MutationnovelD183N0.24
UCECchr349682857Missense_MutationnovelA633V0.5
UCECchr349676656Nonsense_MutationnovelW264*0.47
UCECchr349680584SilentnovelD418D0.44
UCECchr349682674Silentrs377618583C607C0.46
UCECchr349677015SilentNAQ330Q0.23
UCECchr349683131Missense_Mutationrs758684307R693Q0.05
UCECchr349681776Missense_MutationNAT498I0.12
UCECchr349676506SilentnovelS245S0.44
UCECchr3496834053'UTRnovel0.21
UCECchr349676613Missense_MutationnovelF250C0.37
UCECchr349676943SilentnovelR306R0.22
UCECchr349681233Nonsense_MutationnovelQ478*0.37
UCECchr349680556Missense_MutationnovelS409N0.31
UCECchr349676090Missense_MutationnovelE159D0.29
UCECchr349675230Missense_Mutationrs772175127R65C0.5
UCECchr349681886Splice_SiteNAX509_splice0.56
UCECchr349676805Frame_Shift_DelnovelK291Sfs*170.33
UCECchr349675222Missense_MutationnovelR62Q0.23
UCECchr349675303Frame_Shift_DelNAE91Nfs*30.31
UCECchr349676677SilentnovelG271G0.06
UCECchr349675906Missense_Mutationrs372455516R128W0.06
UCECchr349678853Missense_Mutationrs779678983E354D0.31
UCECchr349675221Nonsense_Mutationrs577640330R62*0.31
UCECchr349676963Missense_MutationNAR313H0.19
UCECchr349681758Missense_MutationnovelG492A0.32
UCECchr349676121Missense_Mutationrs765493835R170C0.22
UCECchr349681886Splice_SiteNAX509_splice0.38
UCECchr349682419Missense_MutationnovelD559Y0.37
UCECchr349675221Nonsense_Mutationrs577640330R62*0.4
UCECchr349682357Missense_Mutationrs774564457R538H0.39
UCECchr349676963Missense_MutationNAR313H0.38

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BRCADEL0.28154.5968e-31
CHOLDEL0.80560.02241
DLBCDEL0.16670.016959
GBMDEL0.0780.056565
LGGDEL0.0780.00089193
LUADDEL0.33910.0021265
PAADDEL0.18480.030662
SARCDEL0.2140.0034746
SKCMDEL0.16350.13887
TGCTAMP0.120.23596
TGCTDEL0.18670.08422
THYMDEL0.08130.037527

Survival Analysis
CancerP-value Q-value
STAD0.049

Kaplan-Meier Survival Analysis

MESO0.038

Kaplan-Meier Survival Analysis

UCS0.0047

Kaplan-Meier Survival Analysis

KIRP0.0001

Kaplan-Meier Survival Analysis

BLCA0.036

Kaplan-Meier Survival Analysis

LAML0.00029

Kaplan-Meier Survival Analysis

DLBC0.019

Kaplan-Meier Survival Analysis

CHOL0.027

Kaplan-Meier Survival Analysis

UVM0.00053

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000164062 (Gene tree)
Gene ID
327
Gene Symbol
APEH
Alias
D3F15S2|DNF15S2|D3S48E
Full Name
acylaminoacyl-peptide hydrolase
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
10,834 bases
Position
chr3:49,673,130-49,683,963
Accession
586
RBP type
non-canonical RBP
Summary
This gene encodes the enzyme acylpeptide hydrolase, which catalyzes the hydrolysis of the terminal acetylated amino acid preferentially from small acetylated peptides. The acetyl amino acid formed by this hydrolase is further processed to acetate and a free amino acid by an aminoacylase. This gene is located within the same region of chromosome 3 (3p21) as the aminoacylase gene, and deletions at this locus are also associated with a decrease in aminoacylase activity. The acylpeptide hydrolase is a homotetrameric protein of 300 kDa with each subunit consisting of 732 amino acid residues. It can play an important role in destroying oxidatively damaged proteins in living cells. Deletions of this gene locus are found in various types of carcinomas, including small cell lung carcinoma and renal cell carcinoma. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000446089APEH-204855-ENSP0000041014958 (aa)-F8WBC4
ENST00000491799APEH-216733--- (aa)--
ENST00000442186APEH-203924-ENSP00000402365308 (aa)-H7C1U0
ENST00000462439APEH-209829--- (aa)--
ENST00000447541APEH-206708-ENSP0000040435354 (aa)-H7C273
ENST00000449966APEH-207825-ENSP00000414369232 (aa)-C9JLK2
ENST00000438011APEH-2022249-ENSP00000415862737 (aa)-C9JIF9
ENST00000296456APEH-2013220XM_005265097ENSP00000296456732 (aa)XP_005265154P13798
ENST00000482301APEH-2141041--- (aa)--
ENST00000463616APEH-210699--- (aa)--
ENST00000463995APEH-2111024--- (aa)--
ENST00000483715APEH-2151055--- (aa)--
ENST00000457042APEH-208853-ENSP00000410366284 (aa)-H7C393
ENST00000480772APEH-213703--- (aa)--
ENST00000469362APEH-212830-ENSP0000043818047 (aa)-H0YFE5
ENST00000447436APEH-205963-ENSP0000040187150 (aa)-F8WEH5
Gene Model
Click here to download ENSG00000164062's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000164062Colitis, Ulcerative2E-1721297633
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000164062rs9822268349682296AUlcerative colitis21297633[1.16-1.26]1.21EFO_0000729
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000164062's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0004252serine-type endopeptidase activity17241160.IDAFunction
GO:0004252serine-type endopeptidase activity-TASFunction
GO:0005515protein binding16189514.25416956.IPIFunction
GO:0005576extracellular region-TASComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0006415translational termination-TASProcess
GO:0006508proteolysis17241160.IDAProcess
GO:0008242omega peptidase activity17241160.IDAFunction
GO:0031965nuclear membrane-IDAComponent
GO:0042802identical protein binding16189514.25416956.IPIFunction
GO:0043312neutrophil degranulation-TASProcess
GO:0050435amyloid-beta metabolic process17241160.IDAProcess
GO:0070062extracellular exosome20458337.23533145.HDAComponent
GO:1904813ficolin-1-rich granule lumen-TASComponent
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