RNA binding proteome (RBPome)
PID | Title | Method |
Time | Author | Doi |
---|
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & HEK293 | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & HEK293 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
29431736 | Capturing the interactome of newly transcribed RNA | PolyT-RICK & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & MCF10A | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & MCF7 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & U2OS | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
27453046 | Comprehensive Identification of RNA-Binding Domains in Human Cells | RIC & Hela | 2016 Aug 18 | Castello A | DOI: 10.1016/j.molcel.2016.06.029 |
30352994 | Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture | RIC & Jurkat | 2018 Oct 23 | Perez-Perri JI | DOI:10.1038/s41467-018-06557-8 |
Protein-Protein Interaction (PPI)
![](./data/PPI/Homo_sapiens/Homo_sapiens.ENSG00000164163.png)
* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl ID | Gene Symbol | Coverage | Identiy |
Ortholog | Gene Symbol | Coverage | Identiy |
Species |
---|
ENSG00000164163 | ABCE1 | 99 | 78.947 | FBgn0086706 | pix | 98 | 77.258 | Drosophila_melanogaster |
---|
ENSG00000164163 | ABCE1 | 100 | 100.000 | ENSMUSG00000058355 | Abce1 | 100 | 100.000 | Mus_musculus |
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ENSG00000164163 | ABCE1 | 89 | 79.679 | YDR091C | | 99 | 68.595 | Saccharomyces_cerevisiae |
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