RNA binding proteome (RBPome)
| PID | Title | Method |
Time | Author | Doi |
|---|
| 22681889 | The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts | 4SURIC & HEK293 | 2012 May | Baltz AG | DOI: 10.1016/j.molcel.2012.05.021 |
| 30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & HEK293 | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
| 30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & HEK293 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
| 29431736 | Capturing the interactome of newly transcribed RNA | PolyT-RICK & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
| 29431736 | Capturing the interactome of newly transcribed RNA | RIC & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
| 29431736 | Capturing the interactome of newly transcribed RNA | RICK & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
| 22658674 | Insights into RNA biology from an atlas of mammalian mRNA-binding proteins | RIC & Hela | 2012 May 31 | Castello A | DOI: 10.1016/j.cell.2012.04.031 |
| 30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & Hela | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
| 30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & MCF7 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
| 30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & U2OS | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
| 30352994 | Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture | RIC & Jurkat | 2018 Oct 23 | Perez-Perri JI | DOI:10.1038/s41467-018-06557-8 |
Protein-Protein Interaction (PPI)
* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
| Ensembl ID | Gene Symbol | Coverage | Identiy |
Ortholog | Gene Symbol | Coverage | Identiy |
Species |
|---|
| ENSG00000166181 | API5 | 99 | 82.704 | ENSDARG00000033597 | api5 | 96 | 82.157 | Danio_rerio |
|---|
| ENSG00000166181 | API5 | 99 | 46.243 | FBgn0027885 | Aac11 | 97 | 46.080 | Drosophila_melanogaster |
|---|
| ENSG00000166181 | API5 | 100 | 98.413 | ENSMUSG00000027193 | Api5 | 100 | 98.413 | Mus_musculus |
|---|
