EuRBPDB

Note: to get the extension of tumor abbreviations.

Cancer Related Information
Basic Information

Differential Expression

Expression in 33 cancers

Mutations

Cancer	Chr	Position	Mutation Type	dbSNP	Protein-change	Allele Freq	RBD
BLCA	chr18	21623838	Missense_Mutation	novel	R61P	0.31
BLCA	chr18	21612399	5'UTR	novel		0.42
BRCA	chr18	21629286	3'UTR	novel		0.29
CESC	chr18	21623899	Silent	novel	V81V	0.3
CESC	chr18	21612346	5'UTR	novel		0.24
CESC	chr18	21612347	5'UTR	novel		0.24
CESC	chr18	21612438	Silent	rs139445414	L3L	0.25
GBM	chr18	21623852	Missense_Mutation	rs572142783	R66W	0.39
HNSC	chr18	21629189	3'UTR	novel		0.2
KIRC	chr18	21629204	3'UTR	novel		0.05
KIRP	chr18	21612360	5'UTR	novel		0.29
LUAD	chr18	21612403	5'UTR	rs11548768		0.16
LUAD	chr18	21629100	Missense_Mutation	NA	R108C	0.19
LUAD	chr18	21612323	5'UTR	novel		0.18
LUAD	chr18	21623816	Nonsense_Mutation	novel	Q54*	0.17
LUSC	chr18	21612387	5'UTR	novel		0.06
LUSC	chr18	21623882	Missense_Mutation	NA	L76V	0.26
OV	chr18	21622742	Missense_Mutation	novel	S11T	0.08	LSM
SKCM	chr18	21623852	Missense_Mutation	rs572142783	R66W	0.22
SKCM	chr18	21629140	3'UTR	novel		0.31
SKCM	chr18	21629066	In_Frame_Del	NA	R112_G115del	0.13
STAD	chr18	21623827	Silent	rs771463023	T57T	0.36
STAD	chr18	21623893	Silent	rs141663553	L79L	0.09
STAD	chr18	21629106	Missense_Mutation	NA	R110C	0.22
STAD	chr18	21623827	Silent	rs771463023	T57T	0.17
STAD	chr18	21612428	5'UTR	NA		0.06
UCEC	chr18	21629234	3'UTR	novel		0.32
UCEC	chr18	21623838	Missense_Mutation	NA	R61Q	0.27
UCEC	chr18	21629286	3'UTR	novel		0.32
UCEC	chr18	21629206	3'UTR	novel		0.23
UCEC	chr18	21629339	3'UTR	novel		0.18
UCEC	chr18	21629340	3'UTR	novel		0.18
UCEC	chr18	21623810	Missense_Mutation	novel	P52S	0.39
UCEC	chr18	21622758	Silent	novel	T16T	0.13
UCEC	chr18	21612366	5'UTR	novel		0.21
UCEC	chr18	21623852	Missense_Mutation	rs572142783	R66W	0.35
UCEC	chr18	21622749	Missense_Mutation	novel	E13D	0.17	LSM
UCEC	chr18	21623811	Missense_Mutation	novel	P52H	0.33
UCEC	chr18	21623840	Missense_Mutation	novel	G62R	0.19

Copy Number Variations (CNVs)

Cancer	Type	Freq	Q-value

Survival Analysis

Cancer	P-value	Q-value
THYM	0.022	Kaplan-Meier Survival Analysis
SARC	0.00013	Kaplan-Meier Survival Analysis
MESO	0.0011	Kaplan-Meier Survival Analysis
ACC	0.0001	Kaplan-Meier Survival Analysis
LUSC	0.044	Kaplan-Meier Survival Analysis
PAAD	0.039	Kaplan-Meier Survival Analysis
LIHC	0.0001	Kaplan-Meier Survival Analysis
DLBC	0.0062	Kaplan-Meier Survival Analysis
LGG	0.025	Kaplan-Meier Survival Analysis
LUAD	0.0069	Kaplan-Meier Survival Analysis
UVM	0.018	Kaplan-Meier Survival Analysis
OV	0.0001	Kaplan-Meier Survival Analysis

Drugs

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000167088 (Gene tree)
Gene ID: 6632
Gene Symbol: SNRPD1
Alias: HsT2456|Sm-D1|SNRPD
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 21,258 bases
Position: chr18:21,612,267-21,633,524
Accession: 11158
RBP type: canonical RBP
Summary: This gene encodes a small nuclear ribonucleoprotein that belongs to the SNRNP core protein family. The protein may act as a charged protein scaffold to promote SNRNP assembly or strengthen SNRNP-SNRNP interactions through nonspecific electrostatic contacts with RNA. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2014]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000300413	LSM	PF01423.22	2.4e-18	1	1
ENSP00000463676	LSM	PF01423.22	0.00015	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RIC & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
27453046	Comprehensive Identification of RNA-Binding Domains in Human Cells	RIC & Hela	2016 Aug 18	Castello A	DOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
27974620	Will the circle be unbroken: specific mutations in the yeast Sm protein ring expose a requirement for assembly factor Brr1, a homolog of Gemin2.	RNA	2017 Mar	Schwer B	doi: 10.1261/rna.059881.116

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000579618	SNRPD1-203	320	-	ENSP00000463676	44 (aa)	-	J3QLR7
ENST00000300413	SNRPD1-201	4909	-	ENSP00000300413	119 (aa)	-	P62314
ENST00000582475	SNRPD1-204	723	-	ENSP00000463568	75 (aa)	-	J3QLI9
ENST00000577906	SNRPD1-202	745	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000167088's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03040	Spliceosome	KEGG
hsa05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000167088's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000167088	SNRPD1	84	30.769	ENSG00000100028	SNRPD3	59	30.986

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000167088	SNRPD1	100	96.639	ENSAPOG00000019446	snrpd1	65	96.639	Acanthochromis_polyacanthus
ENSG00000167088	SNRPD1	100	100.000	ENSAMEG00000002576	SNRPD1	100	98.291	Ailuropoda_melanoleuca
ENSG00000167088	SNRPD1	94	96.429	ENSACIG00000011263	snrpd1	100	96.429	Amphilophus_citrinellus
ENSG00000167088	SNRPD1	100	96.639	ENSAOCG00000007406	snrpd1	100	96.639	Amphiprion_ocellaris
ENSG00000167088	SNRPD1	100	92.437	ENSAPEG00000014961	snrpd1	100	92.437	Amphiprion_percula
ENSG00000167088	SNRPD1	94	96.429	ENSAPEG00000012539	SNRPD1	100	96.429	Amphiprion_percula
ENSG00000167088	SNRPD1	100	96.639	ENSATEG00000014399	snrpd1	100	96.639	Anabas_testudineus
ENSG00000167088	SNRPD1	100	100.000	ENSAPLG00000012256	SNRPD1	97	100.000	Anas_platyrhynchos
ENSG00000167088	SNRPD1	100	100.000	ENSACAG00000006364	SNRPD1	100	100.000	Anolis_carolinensis
ENSG00000167088	SNRPD1	100	100.000	ENSANAG00000025641	SNRPD1	100	100.000	Aotus_nancymaae
ENSG00000167088	SNRPD1	94	96.429	ENSACLG00000017406	snrpd1	100	96.429	Astatotilapia_calliptera
ENSG00000167088	SNRPD1	100	97.479	ENSAMXG00000004589	snrpd1	100	97.479	Astyanax_mexicanus
ENSG00000167088	SNRPD1	100	100.000	ENSBTAG00000008292	SNRPD1	100	100.000	Bos_taurus
ENSG00000167088	SNRPD1	79	94.681	ENSBTAG00000055316	-	81	94.681	Bos_taurus
ENSG00000167088	SNRPD1	100	98.667	ENSBTAG00000047266	-	94	96.429	Bos_taurus
ENSG00000167088	SNRPD1	97	96.522	ENSBTAG00000012376	-	86	96.522	Bos_taurus
ENSG00000167088	SNRPD1	66	93.103	WBGene00004916	snr-3	76	76.042	Caenorhabditis_elegans
ENSG00000167088	SNRPD1	100	100.000	ENSCJAG00000042955	SNRPD1	100	100.000	Callithrix_jacchus
ENSG00000167088	SNRPD1	100	100.000	ENSCAFG00000018247	SNRPD1	100	100.000	Canis_familiaris
ENSG00000167088	SNRPD1	80	100.000	ENSCAFG00020015914	SNRPD1	74	100.000	Canis_lupus_dingo
ENSG00000167088	SNRPD1	100	100.000	ENSCHIG00000005557	SNRPD1	100	97.479	Capra_hircus
ENSG00000167088	SNRPD1	100	100.000	ENSTSYG00000030028	SNRPD1	100	100.000	Carlito_syrichta
ENSG00000167088	SNRPD1	100	100.000	ENSCAPG00000008103	SNRPD1	99	99.130	Cavia_aperea
ENSG00000167088	SNRPD1	100	100.000	ENSCPOG00000004679	SNRPD1	100	100.000	Cavia_porcellus
ENSG00000167088	SNRPD1	100	97.333	ENSCCAG00000016652	-	100	96.639	Cebus_capucinus
ENSG00000167088	SNRPD1	100	97.333	ENSCCAG00000005390	-	81	95.833	Cebus_capucinus
ENSG00000167088	SNRPD1	100	100.000	ENSCCAG00000020611	-	100	99.160	Cebus_capucinus
ENSG00000167088	SNRPD1	100	100.000	ENSCCAG00000032658	SNRPD1	100	100.000	Cebus_capucinus
ENSG00000167088	SNRPD1	100	100.000	ENSCATG00000039978	SNRPD1	100	100.000	Cercocebus_atys
ENSG00000167088	SNRPD1	100	100.000	ENSCLAG00000008691	SNRPD1	100	100.000	Chinchilla_lanigera
ENSG00000167088	SNRPD1	100	100.000	ENSCSAG00000017654	SNRPD1	100	100.000	Chlorocebus_sabaeus
ENSG00000167088	SNRPD1	100	100.000	ENSCPBG00000023143	SNRPD1	100	100.000	Chrysemys_picta_bellii
ENSG00000167088	SNRPD1	68	96.667	ENSCING00000024100	-	69	87.209	Ciona_intestinalis
ENSG00000167088	SNRPD1	68	96.667	ENSCSAVG00000004578	-	70	85.057	Ciona_savignyi
ENSG00000167088	SNRPD1	100	100.000	ENSCGRG00001021055	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSG00000167088	SNRPD1	81	75.000	ENSCGRG00001009945	-	85	75.000	Cricetulus_griseus_chok1gshd
ENSG00000167088	SNRPD1	100	100.000	ENSCGRG00000000490	-	100	100.000	Cricetulus_griseus_crigri
ENSG00000167088	SNRPD1	81	75.000	ENSCGRG00000006224	-	85	75.000	Cricetulus_griseus_crigri
ENSG00000167088	SNRPD1	80	94.737	ENSCSEG00000018141	snrpd1	81	94.792	Cynoglossus_semilaevis
ENSG00000167088	SNRPD1	100	96.639	ENSCVAG00000000534	snrpd1	100	96.639	Cyprinodon_variegatus
ENSG00000167088	SNRPD1	100	97.479	ENSDARG00000011648	snrpd1	100	97.479	Danio_rerio
ENSG00000167088	SNRPD1	100	100.000	ENSDNOG00000040310	SNRPD1	100	100.000	Dasypus_novemcinctus
ENSG00000167088	SNRPD1	100	100.000	ENSDORG00000008349	Snrpd1	100	100.000	Dipodomys_ordii
ENSG00000167088	SNRPD1	68	96.667	FBgn0261933	SmD1	76	82.979	Drosophila_melanogaster
ENSG00000167088	SNRPD1	100	100.000	ENSETEG00000011689	SNRPD1	74	100.000	Echinops_telfairi
ENSG00000167088	SNRPD1	94	92.857	ENSEBUG00000003170	snrpd1	94	92.857	Eptatretus_burgeri
ENSG00000167088	SNRPD1	100	100.000	ENSEASG00005002433	SNRPD1	100	100.000	Equus_asinus_asinus
ENSG00000167088	SNRPD1	100	100.000	ENSECAG00000014373	SNRPD1	100	100.000	Equus_caballus
ENSG00000167088	SNRPD1	75	100.000	ENSEEUG00000004987	SNRPD1	100	100.000	Erinaceus_europaeus
ENSG00000167088	SNRPD1	93	85.586	ENSELUG00000000088	snrpd1	79	95.745	Esox_lucius
ENSG00000167088	SNRPD1	100	100.000	ENSFCAG00000012352	SNRPD1	100	100.000	Felis_catus
ENSG00000167088	SNRPD1	100	100.000	ENSFALG00000002646	SNRPD1	100	100.000	Ficedula_albicollis
ENSG00000167088	SNRPD1	100	97.479	ENSGMOG00000015607	snrpd1	100	97.479	Gadus_morhua
ENSG00000167088	SNRPD1	100	100.000	ENSGALG00000041334	SNRPD1	100	100.000	Gallus_gallus
ENSG00000167088	SNRPD1	100	96.639	ENSGAFG00000011171	snrpd1	100	96.639	Gambusia_affinis
ENSG00000167088	SNRPD1	100	97.479	ENSGACG00000005201	SNRPD1	100	97.479	Gasterosteus_aculeatus
ENSG00000167088	SNRPD1	100	100.000	ENSGAGG00000011197	SNRPD1	100	100.000	Gopherus_agassizii
ENSG00000167088	SNRPD1	81	94.792	ENSGGOG00000026706	-	80	94.792	Gorilla_gorilla
ENSG00000167088	SNRPD1	100	100.000	ENSGGOG00000041053	SNRPD1	100	100.000	Gorilla_gorilla
ENSG00000167088	SNRPD1	100	96.639	ENSHBUG00000003236	snrpd1	100	96.639	Haplochromis_burtoni
ENSG00000167088	SNRPD1	100	100.000	ENSHGLG00000007152	SNRPD1	100	100.000	Heterocephalus_glaber_female
ENSG00000167088	SNRPD1	100	100.000	ENSHGLG00100008618	SNRPD1	100	100.000	Heterocephalus_glaber_male
ENSG00000167088	SNRPD1	100	96.639	ENSIPUG00000003576	snrpd1	100	96.639	Ictalurus_punctatus
ENSG00000167088	SNRPD1	100	100.000	ENSSTOG00000000485	SNRPD1	100	100.000	Ictidomys_tridecemlineatus
ENSG00000167088	SNRPD1	100	100.000	ENSJJAG00000017698	Snrpd1	100	100.000	Jaculus_jaculus
ENSG00000167088	SNRPD1	100	96.639	ENSKMAG00000005987	snrpd1	100	96.639	Kryptolebias_marmoratus
ENSG00000167088	SNRPD1	100	96.639	ENSLBEG00000003327	snrpd1	100	96.639	Labrus_bergylta
ENSG00000167088	SNRPD1	100	100.000	ENSLACG00000001955	SNRPD1	100	100.000	Latimeria_chalumnae
ENSG00000167088	SNRPD1	100	98.667	ENSLOCG00000002003	snrpd1	100	97.436	Lepisosteus_oculatus
ENSG00000167088	SNRPD1	100	100.000	ENSLAFG00000005819	SNRPD1	100	98.305	Loxodonta_africana
ENSG00000167088	SNRPD1	100	100.000	ENSMFAG00000042080	SNRPD1	100	100.000	Macaca_fascicularis
ENSG00000167088	SNRPD1	100	100.000	ENSMMUG00000003992	SNRPD1	97	100.000	Macaca_mulatta
ENSG00000167088	SNRPD1	100	100.000	ENSMNEG00000041296	SNRPD1	100	100.000	Macaca_nemestrina
ENSG00000167088	SNRPD1	100	100.000	ENSMLEG00000028659	SNRPD1	100	100.000	Mandrillus_leucophaeus
ENSG00000167088	SNRPD1	100	96.639	ENSMAMG00000012971	snrpd1	100	96.639	Mastacembelus_armatus
ENSG00000167088	SNRPD1	100	96.639	ENSMZEG00005004685	snrpd1	100	96.639	Maylandia_zebra
ENSG00000167088	SNRPD1	100	100.000	ENSMGAG00000011598	SNRPD1	95	100.000	Meleagris_gallopavo
ENSG00000167088	SNRPD1	82	94.845	ENSMAUG00000006829	-	62	94.845	Mesocricetus_auratus
ENSG00000167088	SNRPD1	81	83.333	ENSMAUG00000016502	-	86	83.333	Mesocricetus_auratus
ENSG00000167088	SNRPD1	81	83.333	ENSMAUG00000016467	-	86	83.333	Mesocricetus_auratus
ENSG00000167088	SNRPD1	100	100.000	ENSMICG00000044066	SNRPD1	100	100.000	Microcebus_murinus
ENSG00000167088	SNRPD1	100	100.000	ENSMOCG00000017367	Snrpd1	100	100.000	Microtus_ochrogaster
ENSG00000167088	SNRPD1	100	96.639	ENSMMOG00000019089	snrpd1	100	96.639	Mola_mola
ENSG00000167088	SNRPD1	100	100.000	ENSMODG00000021487	SNRPD1	100	100.000	Monodelphis_domestica
ENSG00000167088	SNRPD1	100	96.639	ENSMALG00000014459	snrpd1	100	96.639	Monopterus_albus
ENSG00000167088	SNRPD1	100	100.000	MGP_CAROLIEiJ_G0021994	Snrpd1	100	100.000	Mus_caroli
ENSG00000167088	SNRPD1	100	100.000	ENSMUSG00000002477	Snrpd1	100	100.000	Mus_musculus
ENSG00000167088	SNRPD1	100	100.000	MGP_PahariEiJ_G0018731	Snrpd1	100	100.000	Mus_pahari
ENSG00000167088	SNRPD1	100	100.000	MGP_SPRETEiJ_G0022910	Snrpd1	100	100.000	Mus_spretus
ENSG00000167088	SNRPD1	100	100.000	ENSMPUG00000005567	-	100	98.291	Mustela_putorius_furo
ENSG00000167088	SNRPD1	100	99.160	ENSMPUG00000020041	-	100	99.160	Mustela_putorius_furo
ENSG00000167088	SNRPD1	99	97.297	ENSMLUG00000009124	SNRPD1	90	97.414	Myotis_lucifugus
ENSG00000167088	SNRPD1	100	100.000	ENSNGAG00000023946	Snrpd1	100	100.000	Nannospalax_galili
ENSG00000167088	SNRPD1	79	95.745	ENSNBRG00000012119	snrpd1	78	95.745	Neolamprologus_brichardi
ENSG00000167088	SNRPD1	100	100.000	ENSNLEG00000031430	SNRPD1	100	97.479	Nomascus_leucogenys
ENSG00000167088	SNRPD1	100	100.000	ENSODEG00000005764	SNRPD1	100	100.000	Octodon_degus
ENSG00000167088	SNRPD1	100	96.639	ENSONIG00000002486	snrpd1	100	96.639	Oreochromis_niloticus
ENSG00000167088	SNRPD1	82	88.776	ENSOANG00000004638	-	82	88.776	Ornithorhynchus_anatinus
ENSG00000167088	SNRPD1	100	99.160	ENSOCUG00000014399	-	100	99.160	Oryctolagus_cuniculus
ENSG00000167088	SNRPD1	100	100.000	ENSOCUG00000023761	-	100	98.291	Oryctolagus_cuniculus
ENSG00000167088	SNRPD1	94	96.429	ENSORLG00000012516	snrpd1	100	96.429	Oryzias_latipes
ENSG00000167088	SNRPD1	100	96.639	ENSORLG00020005743	snrpd1	100	96.639	Oryzias_latipes_hni
ENSG00000167088	SNRPD1	100	96.639	ENSORLG00015013402	snrpd1	100	96.639	Oryzias_latipes_hsok
ENSG00000167088	SNRPD1	100	96.639	ENSOMEG00000011571	snrpd1	100	96.639	Oryzias_melastigma
ENSG00000167088	SNRPD1	100	100.000	ENSOGAG00000007833	SNRPD1	100	96.639	Otolemur_garnettii
ENSG00000167088	SNRPD1	100	94.958	ENSOARG00000003413	-	85	94.958	Ovis_aries
ENSG00000167088	SNRPD1	100	100.000	ENSPPAG00000042593	SNRPD1	100	100.000	Pan_paniscus
ENSG00000167088	SNRPD1	100	79.221	ENSPPRG00000005009	-	92	72.321	Panthera_pardus
ENSG00000167088	SNRPD1	100	100.000	ENSPPRG00000002399	SNRPD1	100	100.000	Panthera_pardus
ENSG00000167088	SNRPD1	100	100.000	ENSPTIG00000013206	SNRPD1	100	100.000	Panthera_tigris_altaica
ENSG00000167088	SNRPD1	100	100.000	ENSPTRG00000009909	SNRPD1	100	100.000	Pan_troglodytes
ENSG00000167088	SNRPD1	86	94.118	ENSPTRG00000050159	-	87	94.118	Pan_troglodytes
ENSG00000167088	SNRPD1	100	100.000	ENSPANG00000023478	SNRPD1	100	100.000	Papio_anubis
ENSG00000167088	SNRPD1	91	92.647	ENSPKIG00000021610	snrpd1	94	95.238	Paramormyrops_kingsleyae
ENSG00000167088	SNRPD1	100	97.479	ENSPKIG00000003985	SNRPD1	100	97.479	Paramormyrops_kingsleyae
ENSG00000167088	SNRPD1	100	96.639	ENSPMGG00000001862	snrpd1	100	96.639	Periophthalmus_magnuspinnatus
ENSG00000167088	SNRPD1	100	100.000	ENSPEMG00000014773	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSG00000167088	SNRPD1	86	82.692	ENSPMAG00000003938	-	85	82.692	Petromyzon_marinus
ENSG00000167088	SNRPD1	100	100.000	ENSPCIG00000020320	SNRPD1	100	100.000	Phascolarctos_cinereus
ENSG00000167088	SNRPD1	81	95.833	ENSPFOG00000012448	SNRPD1	85	95.833	Poecilia_formosa
ENSG00000167088	SNRPD1	81	95.833	ENSPLAG00000006738	snrpd1	85	95.833	Poecilia_latipinna
ENSG00000167088	SNRPD1	81	95.833	ENSPMEG00000021942	snrpd1	85	95.833	Poecilia_mexicana
ENSG00000167088	SNRPD1	100	96.639	ENSPREG00000007094	snrpd1	100	96.639	Poecilia_reticulata
ENSG00000167088	SNRPD1	100	100.000	ENSPPYG00000025874	SNRPD1	100	100.000	Pongo_abelii
ENSG00000167088	SNRPD1	100	100.000	ENSPCOG00000013327	SNRPD1	100	100.000	Propithecus_coquereli
ENSG00000167088	SNRPD1	100	100.000	ENSPVAG00000005511	SNRPD1	80	100.000	Pteropus_vampyrus
ENSG00000167088	SNRPD1	100	96.639	ENSPNAG00000017824	snrpd1	100	96.639	Pygocentrus_nattereri
ENSG00000167088	SNRPD1	100	100.000	ENSRNOG00000013714	Snrpd1	100	100.000	Rattus_norvegicus
ENSG00000167088	SNRPD1	100	100.000	ENSRBIG00000022996	SNRPD1	100	100.000	Rhinopithecus_bieti
ENSG00000167088	SNRPD1	100	100.000	ENSRROG00000027640	SNRPD1	100	100.000	Rhinopithecus_roxellana
ENSG00000167088	SNRPD1	100	100.000	ENSSBOG00000020998	SNRPD1	100	100.000	Saimiri_boliviensis_boliviensis
ENSG00000167088	SNRPD1	100	100.000	ENSSHAG00000011791	SNRPD1	100	100.000	Sarcophilus_harrisii
ENSG00000167088	SNRPD1	94	95.536	ENSSFOG00015008809	-	94	95.536	Scleropages_formosus
ENSG00000167088	SNRPD1	94	95.536	ENSSFOG00015022253	-	94	95.536	Scleropages_formosus
ENSG00000167088	SNRPD1	94	95.536	ENSSMAG00000008765	snrpd1	94	95.536	Scophthalmus_maximus
ENSG00000167088	SNRPD1	91	95.370	ENSSDUG00000010521	snrpd1	92	95.370	Seriola_dumerili
ENSG00000167088	SNRPD1	100	96.639	ENSSLDG00000011858	snrpd1	100	96.639	Seriola_lalandi_dorsalis
ENSG00000167088	SNRPD1	57	100.000	ENSSARG00000004271	SNRPD1	100	100.000	Sorex_araneus
ENSG00000167088	SNRPD1	100	100.000	ENSSPUG00000002824	SNRPD1	100	100.000	Sphenodon_punctatus
ENSG00000167088	SNRPD1	94	96.429	ENSSPAG00000015229	snrpd1	100	96.429	Stegastes_partitus
ENSG00000167088	SNRPD1	100	100.000	ENSSSCG00000003701	SNRPD1	100	100.000	Sus_scrofa
ENSG00000167088	SNRPD1	100	100.000	ENSTGUG00000005095	SNRPD1	97	100.000	Taeniopygia_guttata
ENSG00000167088	SNRPD1	94	96.429	ENSTRUG00000008977	snrpd1	100	96.429	Takifugu_rubripes
ENSG00000167088	SNRPD1	91	94.118	ENSTNIG00000001224	snrpd1	92	91.667	Tetraodon_nigroviridis
ENSG00000167088	SNRPD1	100	100.000	ENSTBEG00000013776	SNRPD1	100	100.000	Tupaia_belangeri
ENSG00000167088	SNRPD1	100	100.000	ENSTTRG00000002654	SNRPD1	100	100.000	Tursiops_truncatus
ENSG00000167088	SNRPD1	100	100.000	ENSUAMG00000013431	SNRPD1	97	100.000	Ursus_americanus
ENSG00000167088	SNRPD1	100	100.000	ENSUMAG00000019740	SNRPD1	100	100.000	Ursus_maritimus
ENSG00000167088	SNRPD1	100	100.000	ENSVPAG00000010056	SNRPD1	80	100.000	Vicugna_pacos
ENSG00000167088	SNRPD1	100	100.000	ENSVVUG00000004009	SNRPD1	100	100.000	Vulpes_vulpes
ENSG00000167088	SNRPD1	100	98.667	ENSXETG00000027354	snrpd1	100	98.319	Xenopus_tropicalis
ENSG00000167088	SNRPD1	100	96.639	ENSXCOG00000020108	snrpd1	100	96.639	Xiphophorus_couchianus
ENSG00000167088	SNRPD1	100	96.639	ENSXMAG00000003368	snrpd1	100	96.639	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000243	commitment complex	21873635.	IBA	Component
GO:0000245	spliceosomal complex assembly	7527560.	TAS	Process
GO:0000387	spliceosomal snRNP assembly	21873635.	IBA	Process
GO:0000387	spliceosomal snRNP assembly	18984161.	IDA	Process
GO:0000387	spliceosomal snRNP assembly	-	TAS	Process
GO:0000398	mRNA splicing, via spliceosome	11991638.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	28076346.	IDA	Process
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005515	protein binding	9417867.11714716.14524621.15939020.18984161.22365833.25416956.30021884.	IPI	Function
GO:0005634	nucleus	21630459.	HDA	Component
GO:0005634	nucleus	14524621.28076346.	IDA	Component
GO:0005634	nucleus	14524621.	IMP	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21113136.25555158.	IDA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21516107.	IDA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	15146077.	IDA	Component
GO:0005829	cytosol	18984161.	IDA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0008380	RNA splicing	1701240.	TAS	Process
GO:0030532	small nuclear ribonucleoprotein complex	7527560.	TAS	Component
GO:0034709	methylosome	18984161.	IDA	Component
GO:0034715	pICln-Sm protein complex	21873635.	IBA	Component
GO:0034715	pICln-Sm protein complex	18984161.	IDA	Component
GO:0034719	SMN-Sm protein complex	21873635.	IBA	Component
GO:0034719	SMN-Sm protein complex	18984161.	IDA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	26912367.	IDA	Component
GO:0051170	import into nucleus	-	TAS	Process
GO:0071005	U2-type precatalytic spliceosome	28781166.	IDA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	28076346.	IDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	11991638.	IDA	Component
GO:1990446	U1 snRNP binding	-	IEA	Function

EuRBPDB

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Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

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Select Dataset :

Input Drug :

Input Cell Line :

Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Note: to get the extension of tumor abbreviations.