EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
18307534Novel BRCA2-interacting protein BJ-HCC-20A inhibits the induction of apoptosis in response to DNA damage.Cancer Sci2008 AprTomiyoshi Gdoi: 10.1111/j.1349-7006.2008.00733.x

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchrX135160552Missense_MutationNAD95Y0.32
BRCAchrX135171103SilentnovelG23G0.07
BRCAchrX135158251Nonsense_MutationNAS162*0.17
CESCchrX135158244Missense_MutationNAI164M0.17
CESCchrX135169624SilentnovelD83D0.35
CESCchrX135158286Missense_MutationnovelL150F0.09
COADchrX1351712975'UTRnovel0.14
COADchrX135169614Missense_MutationnovelY87H0.12
COADchrX1351711955'UTRnovel0.34
COADchrX135158206Missense_Mutationrs142030219T177M0.19
COADchrX135158246Missense_MutationnovelI164F0.45
ESCAchrX135169689Missense_MutationnovelD62Y0.86
GBMchrX135169607Missense_MutationnovelL89S0.13
GBMchrX135158288Missense_MutationnovelL150V0.28
GBMchrX135160467Missense_MutationNAE123G0.75
HNSCchrX1351711735'UTRrs7824196740.11
HNSCchrX135171110Missense_MutationNAR21Q0.25
HNSCchrX135171111Nonsense_MutationNAR21*0.29
HNSCchrX135158238SilentnovelA166A0.34
LGGchrX135171159Missense_MutationnovelL5M0.46
LGGchrX135169771SilentNAT34T0.37
LIHCchrX135171105Missense_MutationnovelG23C0.88
LUADchrX135169665SilentNAL70L0.21
LUADchrX135158202Missense_MutationNAE178D0.11
LUADchrX135171085SilentNAL29L0.18
LUADchrX135169710Missense_MutationnovelE55K0.05
LUADchrX1351712335'UTRnovel0.11
LUADchrX135169595Missense_MutationnovelK93M0.24
LUADchrX135169594Missense_MutationnovelK93N0.14
LUADchrX135160524Missense_MutationnovelA104D0.65
LUSCchrX135169706Missense_Mutationrs782056530S56L0.79
LUSCchrX135169700Missense_MutationnovelY58C0.15
LUSCchrX1351712355'UTRnovel0.27
LUSCchrX135160475SilentnovelS120S0.11
LUSCchrX1351711765'UTRnovel0.1
OVchrX1351711905'UTRnovel0.21
PAADchrX135171089Missense_MutationnovelG28D0.21
READchrX135158271Nonsense_MutationnovelY155*0.24
SKCMchrX135169751Missense_MutationnovelG41E0.9
SKCMchrX135169751Missense_MutationnovelG41E0.63
SKCMchrX135169752Missense_MutationNAG41R0.63
SKCMchrX135169611Missense_MutationnovelG88R0.61
SKCMchrX135169752Missense_MutationNAG41R0.09
SKCMchrX135158205SilentNAT177T0.75
SKCMchrX135158270Missense_MutationNAS156P0.41
STADchrX135169748Missense_MutationNAV42A0.1
STADchrX135169645SilentNAV76V0.7
STADchrX135160500Missense_MutationNAR112I0.88
UCECchrX135171111Nonsense_MutationNAR21*0.31
UCECchrX135160534Missense_MutationnovelL101I0.42
UCECchrX1351712285'UTRnovel0.4
UCECchrX1351713535'UTRnovel0.4
UCECchrX135158303Missense_MutationnovelP145S0.41
UCECchrX135158257Missense_MutationnovelG160D0.4
UCECchrX135169760Missense_MutationNAT38N0.29
UCECchrX135158218Missense_MutationnovelR173L0.17
UCECchrX135160476Missense_MutationnovelS120Y0.14
UCECchrX1351712565'UTRNA0.3
UCECchrX135160465Missense_MutationnovelD124Y0.32
UCECchrX135171111Nonsense_MutationNAR21*0.47
UCECchrX135158218Missense_MutationnovelR173H0.48
UCECchrX135160497Missense_MutationnovelV113G0.13
UCECchrX135171123Missense_Mutationrs782523634D17N0.47
UCECchrX135160492Missense_MutationnovelI115F0.21
UCECchrX135160443Missense_MutationnovelS131N0.37
UCECchrX135169668Missense_MutationnovelP69S0.37
UCECchrX135160433Missense_MutationnovelF134L0.09
UCECchrX135171078Missense_MutationnovelG32C0.43
UCECchrX135169720SilentnovelG51G0.14
UCECchrX135158233Missense_MutationnovelS168F0.66
UCECchrX1351711725'UTRnovel0.26

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCAMP0.08330.24013
KIRCAMP0.03030.12739
READAMP0.13940.14805
TGCTDEL0.06670.08422
THCADEL00.21991
UCSDEL0.30360.063955

Survival Analysis
CancerP-value Q-value
SARC0.045

Kaplan-Meier Survival Analysis

SKCM0.002

Kaplan-Meier Survival Analysis

BRCA0.043

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000169551 (Gene tree)
Gene ID
54967
Gene Symbol
CT55
Alias
FLJ20527|CXorf48
Full Name
cancer/testis antigen 55
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
15,292 bases
Position
chrX:135,156,536-135,171,827
Accession
26047
RBP type
canonical RBP
Summary
CT55 (Cancer/Testis Antigen 55) is a Protein Coding gene. An important paralog of this gene is MOV10.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000343893S1-likePF14444.61.5e-1912
ENSP00000343893S1-likePF14444.61.5e-1922
ENSP00000276241S1-likePF14444.62.2e-1912
ENSP00000276241S1-likePF14444.62.2e-1922
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000276241CT55-2011445XM_005262427ENSP00000276241264 (aa)XP_005262484Q8WUE5
ENST00000344129CT55-2021728-ENSP00000343893242 (aa)-Q8WUE5
Gene Model
Click here to download ENSG00000169551's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000169551's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000169551CT559569.323ENSANAG00000025850CT559667.323Aotus_nancymaae
ENSG00000169551CT5510071.074ENSCJAG00000020403CT559569.444Callithrix_jacchus
ENSG00000169551CT559473.387ENSCCAG00000033288CT559672.441Cebus_capucinus
ENSG00000169551CT559583.200ENSCATG00000032930CT559682.677Cercocebus_atys
ENSG00000169551CT559689.370ENSCSAG00000007710-9689.370Chlorocebus_sabaeus
ENSG00000169551CT559479.151ENSCSAG00000007720-9678.409Chlorocebus_sabaeus
ENSG00000169551CT5510082.197ENSCANG00000038605CT559681.890Colobus_angolensis_palliatus
ENSG00000169551CT555897.163ENSGGOG00000028404-9097.163Gorilla_gorilla
ENSG00000169551CT559585.600ENSMFAG00000031424CT559685.039Macaca_fascicularis
ENSG00000169551CT559584.064ENSMMUG00000018715CT559683.529Macaca_mulatta
ENSG00000169551CT559585.600ENSMNEG00000037841CT559685.039Macaca_nemestrina
ENSG00000169551CT559582.800ENSMLEG00000028336CT559682.283Mandrillus_leucophaeus
ENSG00000169551CT5510064.198ENSMICG00000047795CT559560.558Microcebus_murinus
ENSG00000169551CT559693.701ENSNLEG00000029349CT559693.701Nomascus_leucogenys
ENSG00000169551CT559959.167ENSOGAG00000007138CT559659.592Otolemur_garnettii
ENSG00000169551CT557497.207ENSPPAG00000001184-10097.207Pan_paniscus
ENSG00000169551CT556589.474ENSPTRG00000022296CT5510089.474Pan_troglodytes
ENSG00000169551CT5510097.934ENSPTRG00000050752CT5510097.727Pan_troglodytes
ENSG00000169551CT559484.141ENSPANG00000012503CT559583.550Papio_anubis
ENSG00000169551CT559692.520ENSPPYG00000020744CT559692.520Pongo_abelii
ENSG00000169551CT5510063.223ENSPCOG00000015916CT559661.811Propithecus_coquereli
ENSG00000169551CT559944.583ENSRNOG00000061094LOC1003602968746.635Rattus_norvegicus
ENSG00000169551CT559949.793ENSRBIG00000032050-9552.381Rhinopithecus_bieti
ENSG00000169551CT559689.224ENSRBIG00000036226-9689.224Rhinopithecus_bieti
ENSG00000169551CT5510082.197ENSRROG00000043598CT559682.283Rhinopithecus_roxellana
ENSG00000169551CT558663.462ENSTBEG00000009423-9960.699Tupaia_belangeri
ENSG00000169551CT559556.332ENSTBEG00000013745-9956.332Tupaia_belangeri
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding25416956.IPIFunction
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