EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr11309271Splice_RegionnovelI107I0.17
BLCAchr11310646SilentnovelF219F0.08
BLCAchr11310728Intronnovel0.39
BLCAchr11309717SilentnovelQ170Q0.35
BLCAchr11310977Silentrs747362903T256T0.39
BLCAchr11309461Missense_MutationNAR111W0.55PseudoU_synth_1
BRCAchr11310552Intronnovel0.12
CESCchr11311046SilentNAL279L0.27
CESCchr11310860Intronnovel0.3
COADchr11309836Frame_Shift_Delrs764750132E212Rfs*260.16
ESCAchr11310825Intronnovel0.24
GBMchr11309515Missense_MutationnovelT129A0.63
LUADchr11311057Missense_Mutationrs766185058L283P0.24
LUSCchr11308944Missense_MutationNAR36L0.3PseudoU_synth_1
LUSCchr11309757Missense_MutationNAA184T0.2
LUSCchr11310676SilentnovelF229F0.17
PAADchr11309548Missense_MutationnovelR140W0.13
PAADchr11310694Splice_Regionnovel0.22
SKCMchr11309571Missense_MutationNAF147L0.27
STADchr11309629Intronnovel0.38
STADchr11309529SilentNAR133R0.24
UCECchr11310667SilentnovelS226S0.19
UCECchr11310585Intronnovel0.13
UCECchr11310638Missense_MutationnovelL217M0.15
UCECchr11311035Missense_Mutationrs201132832G276S0.22
UCECchr11310607Intronnovel0.45
UCECchr11309734In_Frame_Delrs776346419D177del0.75
UCECchr11310912Missense_Mutationrs748869074R235W0.42
UCECchr11310977Silentrs747362903T256T0.34
UCECchr11311347Missense_MutationnovelL294M0.19

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.11530.00029523
DLBCDEL0.18750.011841
HNSCDEL0.14187.0766e-07
KIRCDEL0.14392.3538e-09
KIRPDEL0.1841.462e-09
LIHCDEL0.40271.1606e-33
LUADDEL0.13570.0024765
LUSCDEL0.34732.5882e-07
MESODEL0.34482.434e-07
SARCDEL0.24128.425e-11
SKCMDEL0.16895.1876e-09
TGCTDEL0.18670.00046313
UCSDEL0.30360.0051125

Survival Analysis
CancerP-value Q-value
SARC0.048

Kaplan-Meier Survival Analysis

MESO0.015

Kaplan-Meier Survival Analysis

ACC0.05

Kaplan-Meier Survival Analysis

SKCM0.0029

Kaplan-Meier Survival Analysis

LAML0.00023

Kaplan-Meier Survival Analysis

LIHC0.00015

Kaplan-Meier Survival Analysis

DLBC0.042

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

UVM0.00044

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000169972 (Gene tree)
Gene ID
126789
Gene Symbol
PUSL1
Alias
FLJ90811
Full Name
pseudouridine synthase like 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
3,111 bases
Position
chr1:1,308,567-1,311,677
Accession
26914
RBP type
canonical RBP
Summary
(Pseudouridine Synthase Like 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include RNA binding and pseudouridine synthase activity. An important paralog of this gene is PUS3.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000368318PseudoU_synth_1PF01416.201.8e-3512
ENSP00000368318PseudoU_synth_1PF01416.201.8e-3522
ENSP00000462968PseudoU_synth_1PF01416.203.9e-2611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000379031PUSL1-2011287XM_005244720ENSP00000368318303 (aa)XP_005244777Q8N0Z8
ENST00000470520PUSL1-204769--- (aa)--
ENST00000463758PUSL1-202940--- (aa)--
ENST00000493657PUSL1-2051783--- (aa)--
ENST00000467712PUSL1-203877-ENSP00000462968125 (aa)-J3KTG4
Gene Model
Click here to download ENSG00000169972's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000169972Colitis, Ulcerative1E-926192919
ENSG00000169972Inflammatory Bowel Diseases2E-728067908
ENSG00000169972Crohn Disease6E-726192919
ENSG00000169972Inflammatory Bowel Diseases3E-1126192919
ENSG00000169972Inflammatory Bowel Diseases8E-1323128233
ENSG00000169972Colitis, Ulcerative3E-628067908
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000169972rs1159028311309988?Systemic lupus erythematosus28714469[1.10-1.22]1.1627907EFO_0002690
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000169972's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000169972PUSL19749.593ENSAPOG00000016290pusl19250.725Acanthochromis_polyacanthus
ENSG00000169972PUSL19886.066ENSAMEG00000013752PUSL19883.502Ailuropoda_melanoleuca
ENSG00000169972PUSL19849.600ENSACIG00000015240pusl19948.162Amphilophus_citrinellus
ENSG00000169972PUSL19748.780ENSAOCG00000019419pusl18350.357Amphiprion_ocellaris
ENSG00000169972PUSL19748.780ENSAPEG00000005452pusl19250.725Amphiprion_percula
ENSG00000169972PUSL19747.967ENSATEG00000024154pusl19251.087Anabas_testudineus
ENSG00000169972PUSL19752.846ENSAPLG00000004946PUSL19654.325Anas_platyrhynchos
ENSG00000169972PUSL110050.394ENSACAG00000014111PUSL19654.510Anolis_carolinensis
ENSG00000169972PUSL19993.046ENSANAG00000037456PUSL19993.046Aotus_nancymaae
ENSG00000169972PUSL19848.000ENSACLG00000008675pusl19548.221Astatotilapia_calliptera
ENSG00000169972PUSL19844.715ENSAMXG00000044007pusl19647.518Astyanax_mexicanus
ENSG00000169972PUSL19885.366ENSBTAG00000007619PUSL19984.669Bos_taurus
ENSG00000169972PUSL19993.046ENSCJAG00000010972PUSL19993.046Callithrix_jacchus
ENSG00000169972PUSL19882.114ENSCAFG00000019291PUSL19881.271Canis_familiaris
ENSG00000169972PUSL19981.667ENSCAFG00020011568PUSL19881.667Canis_lupus_dingo
ENSG00000169972PUSL19886.992ENSCHIG00000012615PUSL19886.170Capra_hircus
ENSG00000169972PUSL19881.967ENSCAPG00000011911-9282.258Cavia_aperea
ENSG00000169972PUSL17530.263ENSCAPG00000006421PUS16330.263Cavia_aperea
ENSG00000169972PUSL110080.800ENSCPOG00000005149PUSL19780.268Cavia_porcellus
ENSG00000169972PUSL110093.600ENSCCAG00000027475PUSL19993.709Cebus_capucinus
ENSG00000169972PUSL110094.400ENSCATG00000018260PUSL19994.040Cercocebus_atys
ENSG00000169972PUSL110081.600ENSCLAG00000005232PUSL19982.724Chinchilla_lanigera
ENSG00000169972PUSL110095.200ENSCSAG00000000680PUSL19995.033Chlorocebus_sabaeus
ENSG00000169972PUSL19855.200ENSCPBG00000022621PUSL19654.643Chrysemys_picta_bellii
ENSG00000169972PUSL110095.200ENSCANG00000034373PUSL19994.040Colobus_angolensis_palliatus
ENSG00000169972PUSL110078.400ENSCGRG00001012429Pusl110076.976Cricetulus_griseus_chok1gshd
ENSG00000169972PUSL110078.400ENSCGRG00000006466Pusl110077.320Cricetulus_griseus_crigri
ENSG00000169972PUSL19749.593ENSCSEG00000005159pusl19249.638Cynoglossus_semilaevis
ENSG00000169972PUSL17945.378ENSCVAG00000012923pusl19145.378Cyprinodon_variegatus
ENSG00000169972PUSL19847.200ENSDARG00000074565pusl19748.746Danio_rerio
ENSG00000169972PUSL19630.000FBgn0083976CG341409832.143Drosophila_melanogaster
ENSG00000169972PUSL110084.000ENSECAG00000006248PUSL19583.333Equus_caballus
ENSG00000169972PUSL110076.800ENSEEUG00000000837PUSL19876.289Erinaceus_europaeus
ENSG00000169972PUSL19749.593ENSELUG00000015945pusl19450.360Esox_lucius
ENSG00000169972PUSL19885.366ENSFCAG00000007617PUSL19983.893Felis_catus
ENSG00000169972PUSL19881.967ENSFDAG00000010007-9582.258Fukomys_damarensis
ENSG00000169972PUSL19754.472ENSFHEG00000006370pusl19252.899Fundulus_heteroclitus
ENSG00000169972PUSL19850.000ENSGMOG00000019388pusl19851.971Gadus_morhua
ENSG00000169972PUSL19852.419ENSGALG00000001714PUSL19852.265Gallus_gallus
ENSG00000169972PUSL19652.459ENSGAFG00000007546pusl19551.071Gambusia_affinis
ENSG00000169972PUSL19749.194ENSGACG00000007848pusl19747.475Gasterosteus_aculeatus
ENSG00000169972PUSL19854.400ENSGAGG00000004730PUSL19654.804Gopherus_agassizii
ENSG00000169972PUSL110096.800ENSGGOG00000005364PUSL110098.062Gorilla_gorilla
ENSG00000169972PUSL19848.000ENSHBUG00000001264pusl19149.638Haplochromis_burtoni
ENSG00000169972PUSL110081.746ENSHGLG00000017570PUSL19780.201Heterocephalus_glaber_female
ENSG00000169972PUSL110081.746ENSHGLG00100007641PUSL18881.955Heterocephalus_glaber_male
ENSG00000169972PUSL19850.400ENSHCOG00000010077pusl19950.730Hippocampus_comes
ENSG00000169972PUSL19843.200ENSIPUG00000023921pusl19648.571Ictalurus_punctatus
ENSG00000169972PUSL19883.607ENSSTOG00000001783PUSL18785.305Ictidomys_tridecemlineatus
ENSG00000169972PUSL110079.200ENSJJAG00000020471Pusl19781.533Jaculus_jaculus
ENSG00000169972PUSL19746.341ENSKMAG00000005154pusl18850.000Kryptolebias_marmoratus
ENSG00000169972PUSL19749.593ENSLBEG00000013469pusl19452.000Labrus_bergylta
ENSG00000169972PUSL16355.102ENSLACG00000018795PUSL19555.102Latimeria_chalumnae
ENSG00000169972PUSL17730.672ENSLACG00000016044-6330.672Latimeria_chalumnae
ENSG00000169972PUSL19846.400ENSLOCG00000002210pusl19746.758Lepisosteus_oculatus
ENSG00000169972PUSL19882.927ENSLAFG00000013685PUSL19982.510Loxodonta_africana
ENSG00000169972PUSL110096.000ENSMFAG00000046288PUSL19995.033Macaca_fascicularis
ENSG00000169972PUSL110095.200ENSMMUG00000016279PUSL19983.444Macaca_mulatta
ENSG00000169972PUSL110094.400ENSMNEG00000037989PUSL19994.371Macaca_nemestrina
ENSG00000169972PUSL19497.436ENSMLEG00000039224-8997.436Mandrillus_leucophaeus
ENSG00000169972PUSL19847.200ENSMAMG00000016538pusl19747.635Mastacembelus_armatus
ENSG00000169972PUSL19848.000ENSMZEG00005026990pusl19845.105Maylandia_zebra
ENSG00000169972PUSL19852.419ENSMGAG00000003037PUSL19652.837Meleagris_gallopavo
ENSG00000169972PUSL110078.400ENSMAUG00000019924Pusl110077.320Mesocricetus_auratus
ENSG00000169972PUSL19785.124ENSMICG00000014171PUSL19884.028Microcebus_murinus
ENSG00000169972PUSL110080.800ENSMOCG00000005602Pusl110078.351Microtus_ochrogaster
ENSG00000169972PUSL19748.780ENSMMOG00000003269pusl19948.921Mola_mola
ENSG00000169972PUSL19745.528ENSMALG00000021686pusl19347.931Monopterus_albus
ENSG00000169972PUSL19884.553MGP_CAROLIEiJ_G0026911Pusl110079.381Mus_caroli
ENSG00000169972PUSL110085.600ENSMUSG00000051557Pusl110080.412Mus_musculus
ENSG00000169972PUSL110084.000MGP_PahariEiJ_G0029260Pusl110079.725Mus_pahari
ENSG00000169972PUSL110084.000MGP_SPRETEiJ_G0027906Pusl110080.412Mus_spretus
ENSG00000169972PUSL19881.208ENSMPUG00000014313PUSL19881.208Mustela_putorius_furo
ENSG00000169972PUSL19880.488ENSNGAG00000004647Pusl18777.855Nannospalax_galili
ENSG00000169972PUSL19750.407ENSNBRG00000014762pusl19447.876Neolamprologus_brichardi
ENSG00000169972PUSL110095.200ENSNLEG00000000051PUSL110095.307Nomascus_leucogenys
ENSG00000169972PUSL19856.452ENSMEUG00000005176-9953.091Notamacropus_eugenii
ENSG00000169972PUSL19862.097ENSMEUG00000011649-9965.371Notamacropus_eugenii
ENSG00000169972PUSL110078.400ENSODEG00000008247PUSL19380.069Octodon_degus
ENSG00000169972PUSL16330.570ENSODEG00000008248PUS15330.570Octodon_degus
ENSG00000169972PUSL19753.226ENSONIG00000019361pusl19451.064Oreochromis_niloticus
ENSG00000169972PUSL19747.967ENSORLG00000016228pusl19748.789Oryzias_latipes
ENSG00000169972PUSL19747.154ENSORLG00020013710pusl19749.481Oryzias_latipes_hni
ENSG00000169972PUSL19747.154ENSORLG00015008715pusl19849.286Oryzias_latipes_hsok
ENSG00000169972PUSL19747.154ENSOMEG00000018897pusl19450.362Oryzias_melastigma
ENSG00000169972PUSL19885.366ENSOGAG00000031692PUSL110084.321Otolemur_garnettii
ENSG00000169972PUSL19886.992ENSOARG00000004905PUSL110084.586Ovis_aries
ENSG00000169972PUSL110099.010ENSPPAG00000029283PUSL110099.010Pan_paniscus
ENSG00000169972PUSL19884.553ENSPPRG00000023329PUSL19982.550Panthera_pardus
ENSG00000169972PUSL19884.553ENSPTIG00000018532PUSL19784.733Panthera_tigris_altaica
ENSG00000169972PUSL110099.010ENSPTRG00000000021PUSL110099.010Pan_troglodytes
ENSG00000169972PUSL110095.200ENSPANG00000000591PUSL19993.709Papio_anubis
ENSG00000169972PUSL19744.000ENSPKIG00000002447pusl19647.857Paramormyrops_kingsleyae
ENSG00000169972PUSL19854.400ENSPSIG00000002781PUSL19457.087Pelodiscus_sinensis
ENSG00000169972PUSL19846.400ENSPMGG00000011051pusl19947.273Periophthalmus_magnuspinnatus
ENSG00000169972PUSL110080.000ENSPEMG00000013541Pusl110080.412Peromyscus_maniculatus_bairdii
ENSG00000169972PUSL19863.710ENSPCIG00000007816-6565.018Phascolarctos_cinereus
ENSG00000169972PUSL19752.846ENSPFOG00000015448pusl19153.623Poecilia_formosa
ENSG00000169972PUSL19752.846ENSPLAG00000004348pusl19253.623Poecilia_latipinna
ENSG00000169972PUSL19752.846ENSPMEG00000000931pusl19253.623Poecilia_mexicana
ENSG00000169972PUSL19752.893ENSPREG00000002324pusl19253.285Poecilia_reticulata
ENSG00000169972PUSL110096.800ENSPPYG00000002014PUSL19495.802Pongo_abelii
ENSG00000169972PUSL19859.350ENSPCAG00000002272PUSL19972.016Procavia_capensis
ENSG00000169972PUSL19682.500ENSPCOG00000024685-8880.645Propithecus_coquereli
ENSG00000169972PUSL110080.800ENSPVAG00000001016PUSL17486.585Pteropus_vampyrus
ENSG00000169972PUSL17849.160ENSPNYG00000006588pusl19849.160Pundamilia_nyererei
ENSG00000169972PUSL19846.400ENSPNAG00000024441pusl19650.179Pygocentrus_nattereri
ENSG00000169972PUSL110085.600ENSRNOG00000022354Pusl19886.290Rattus_norvegicus
ENSG00000169972PUSL19995.161ENSRBIG00000036842PUSL19994.040Rhinopithecus_bieti
ENSG00000169972PUSL19994.355ENSRROG00000030704PUSL19993.709Rhinopithecus_roxellana
ENSG00000169972PUSL110091.200ENSSBOG00000032249PUSL19992.029Saimiri_boliviensis_boliviensis
ENSG00000169972PUSL15066.667ENSSHAG00000004840-8561.585Sarcophilus_harrisii
ENSG00000169972PUSL19746.341ENSSFOG00015008281pusl19548.780Scleropages_formosus
ENSG00000169972PUSL19846.400ENSSMAG00000007187pusl19148.913Scophthalmus_maximus
ENSG00000169972PUSL19848.800ENSSDUG00000000287pusl19347.312Seriola_dumerili
ENSG00000169972PUSL19848.000ENSSLDG00000009605pusl18850.360Seriola_lalandi_dorsalis
ENSG00000169972PUSL16279.787ENSSARG00000005323-10079.787Sorex_araneus
ENSG00000169972PUSL19741.463ENSSPAG00000002528pusl19945.788Stegastes_partitus
ENSG00000169972PUSL110084.800ENSSSCG00000003338PUSL19982.450Sus_scrofa
ENSG00000169972PUSL19849.600ENSTGUG00000003214PUSL19953.546Taeniopygia_guttata
ENSG00000169972PUSL19846.400ENSTRUG00000010102pusl19349.640Takifugu_rubripes
ENSG00000169972PUSL19747.154ENSTNIG00000005789pusl18145.604Tetraodon_nigroviridis
ENSG00000169972PUSL19781.818ENSTBEG00000005001PUSL19959.603Tupaia_belangeri
ENSG00000169972PUSL19875.920ENSTTRG00000017030PUSL19875.920Tursiops_truncatus
ENSG00000169972PUSL19886.066ENSUAMG00000012801PUSL18382.470Ursus_americanus
ENSG00000169972PUSL19885.246ENSUMAG00000002084PUSL18382.072Ursus_maritimus
ENSG00000169972PUSL19883.740ENSVVUG00000004320PUSL19872.861Vulpes_vulpes
ENSG00000169972PUSL17552.193ENSXETG00000011145pusl19952.193Xenopus_tropicalis
ENSG00000169972PUSL19753.659ENSXCOG00000017748pusl19849.821Xiphophorus_couchianus
ENSG00000169972PUSL19752.846ENSXMAG00000018846pusl19252.899Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0009982pseudouridine synthase activity21873635.IBAFunction
GO:0031119tRNA pseudouridine synthesis21873635.IBAProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
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