EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1409832715'UTRnovel0.14
BLCAchr140996138Intronnovel0.32
BLCAchr140995999Missense_Mutationrs376715076R268Q0.6
BLCAchr141001076Silentrs746923692P351P0.29
BRCAchr140988590Splice_Regionnovel0.2
BRCAchr140991834Missense_MutationNAE237K0.26
BRCAchr140984825Missense_MutationNAE57D0.47
BRCAchr141007513Missense_MutationNAR454K0.21
CESCchr141009581SilentNAL561L0.06
CESCchr141009563SilentnovelL555L0.13
COADchr140988674Missense_MutationNAE173D0.36
COADchr141002215Missense_MutationNAA384S0.44
COADchr141007532SilentNAK460K0.37
COADchr141010192Frame_Shift_InsNAD577*0.1
COADchr140996082Intronnovel0.32
COADchr141002221Missense_Mutationrs756273124A386T0.11
COADchr141001088Silentrs771600893H355H0.51
COADchr140997428Missense_MutationNAL303I0.29
COADchr1409832115'UTRnovel0.27
COADchr140996080Intronrs7500501750.17
COADchr141001081Missense_Mutationrs759359795R353H0.31
COADchr140996034Missense_MutationNAK280E0.45
COADchr140984938Frame_Shift_InsnovelQ95Hfs*330.04
COADchr140984940Frame_Shift_InsnovelY96Lfs*70.03
COADchr140991841Nonsense_MutationnovelE239Dfs*20.04
GBMchr140996032Frame_Shift_InsnovelM281Nfs*100.49
GBMchr141003151SilentnovelF409F0.1
GBMchr141008701Missense_MutationnovelR479H0.2
GBMchr140984942Frame_Shift_DelnovelV97Hfs*20.15
GBMchr141003143Missense_MutationnovelV407L0.38
GBMchr140983310Missense_MutationnovelT7N0.44
HNSCchr140988699Missense_MutationnovelL182V0.07
HNSCchr141006079SilentnovelT427T0.18
KIRCchr141006062Missense_MutationnovelT422A0.39
KIRCchr140987450In_Frame_InsnovelE139_P140insRV0.04
KIRCchr140987452Missense_MutationnovelP140A0.02
LAMLchr140991166Missense_MutationnovelP186Q0.28
LIHCchr140983377SilentnovelS29S0.32
LIHCchr140991820Missense_MutationNAM232T0.34
LUADchr140996050Missense_MutationNAW285L0.18
LUADchr140984900SilentNAL82L0.09
LUADchr140996073Splice_Regionnovel0.11
LUADchr141008673Missense_MutationNAD470N0.06
LUADchr140984973Missense_MutationnovelL107M0.41
LUADchr140987419Missense_MutationNAA129S0.36
LUADchr140997420Missense_Mutationrs201674363S300C0.26
LUADchr140995932Missense_MutationnovelD246N0.47
LUADchr140991223Missense_MutationNAR205K0.22
LUADchr140991840Missense_Mutationrs756348375E239Q0.13
LUADchr141009581SilentnovelL561L0.11
LUSCchr140987376Silentrs748480280V114V0.41
LUSCchr140987408Missense_MutationnovelV125G0.33
LUSCchr141008714Missense_MutationNAE483D0.39
LUSCchr140997418SilentnovelC299C0.42
LUSCchr141001063Missense_MutationnovelS347L0.39
LUSCchr141001065Frame_Shift_DelnovelQ348Kfs*530.4
LUSCchr140988674SilentnovelE173E0.32
LUSCchr141007469SilentnovelH439H0.31
OVchr140997401Missense_Mutationrs372743741R294C0.1
OVchr140996065Frame_Shift_InsnovelD290Efs*40.07
OVchr141008797Missense_MutationnovelN485Y0.12
OVchr141009535Missense_MutationnovelA546V0.07
OVchr141009533In_Frame_InsnovelL545_A546insPRSQGL0.04
PAADchr140995971Missense_MutationnovelE259K0.09
PAADchr141001103SilentnovelK360K0.23
PAADchr141008850Missense_MutationnovelQ502H0.22
PRADchr140988539Intronnovel0.11
PRADchr141009581SilentNAL561L0.44
PRADchr141001077Missense_Mutationrs150289603V352M0.36
PRADchr141001071Missense_MutationnovelE350Q0.32
READchr140988621Missense_MutationnovelS156G0.05
READchr140983334Missense_MutationNAG15E0.2
READchr140995999Missense_Mutationrs376715076R268Q0.13
SARCchr141002191Nonsense_MutationNAR376*0.17
SARCchr141010166Missense_MutationnovelT566I0.32
SARCchr141010167SilentnovelT566T0.31
SKCMchr140984960SilentNAR102R0.42
SKCMchr140988669Missense_MutationNAR172G0.16
SKCMchr140988604Missense_MutationnovelT150I0.42
SKCMchr140988605Silentrs779429212T150T0.42
SKCMchr140984907Missense_MutationnovelD85N0.27
SKCMchr141008685Frame_Shift_DelnovelL474Rfs*20.05
SKCMchr140984936SilentNAY94Y0.12
SKCMchr141002236Missense_MutationnovelQ391K0.24
SKCMchr140996105Intronnovel0.3
STADchr141002246Frame_Shift_Insrs755362280L396Ffs*130.5
STADchr141010213Missense_Mutationrs753610646E582K0.3
STADchr140996032Frame_Shift_InsnovelM281Nfs*100.37
STADchr141010213Missense_Mutationrs753610646E582K0.39
STADchr141009509SilentnovelS537S0.09
STADchr140997401Missense_Mutationrs372743741R294C0.34
STADchr141010196Missense_MutationnovelP576H0.32
STADchr140997422Missense_MutationnovelI301V0.06
THCAchr140984982Frame_Shift_InsnovelT110Nfs*290.09
UCECchr140991809Missense_MutationNAE228D0.31
UCECchr140988674Missense_MutationNAE173D0.26
UCECchr141009451Missense_MutationnovelP518L0.2
UCECchr141003116Missense_MutationnovelV398L0.34
UCECchr140996122Intronnovel0.13
UCECchr140997393Splice_SiteNAX291_splice0.35
UCECchr141007532Missense_MutationnovelK460N0.07
UCECchr140988562Intronnovel0.35
UCECchr141007521Missense_MutationnovelF457L0.55
UCECchr140997445Silentrs201952022T308T0.47
UCECchr141006079Silentrs145143197T427T0.41
UCECchr140983457Splice_SitenovelX56_splice0.49
UCECchr1409832435'UTRnovel0.04
UCECchr140988693Missense_MutationNAV180I0.19
UCECchr141001042Missense_MutationNAA340V0.27
UCECchr140996084Intronnovel0.2
UCECchr140987421Silentrs759635738A129A0.29
UCECchr141001089Missense_MutationnovelE356K0.47
UCECchr140991809Missense_MutationNAE228D0.42
UCECchr1409831615'UTRnovel0.26
UCECchr140996061Missense_MutationnovelA289T0.36
UCECchr141001064SilentnovelS347S0.33
UCECchr140983352Missense_MutationNAS21N0.45
UCECchr141010213Missense_Mutationrs753610646E582K0.34
UCECchr140996068Nonsense_MutationnovelY292Afs*40.07
UCECchr141007464Nonsense_MutationnovelE438*0.53
UCECchr141010213Missense_Mutationrs753610646E582K0.4
UCECchr141010213Missense_Mutationrs753610646E582K0.26
UCECchr140983420Missense_MutationnovelN44H0.12
UCECchr140997487Missense_MutationnovelE322D0.35
UCECchr140988645Missense_MutationNAR164C0.25
UCECchr140991206SilentnovelN199N0.44
UCECchr141009453Frame_Shift_DelnovelF520Lfs*640.35
UCECchr141009453Frame_Shift_DelnovelF520Lfs*640.21
UCECchr141002191Nonsense_MutationNAR376*0.36
UCECchr140996092Intronnovel0.29
UCECchr141002229Frame_Shift_InsnovelR389Gfs*200.04
UCECchr140984881Missense_MutationnovelR76L0.23
UCECchr140988520Intronnovel0.26
UCECchr140997460SilentnovelS313S0.19
UCECchr141008707Missense_MutationnovelR481Q0.34
UCECchr140997445Silentrs201952022T308T0.34
UCECchr141010213Missense_Mutationrs753610646E582K0.35
UCECchr140991847Splice_SitenovelX240_splice0.17
UCECchr141007484Missense_MutationNAM444I0.37
UCECchr140984960SilentnovelR102R0.4
UCECchr140988614SilentnovelD153D0.37
UCECchr141008701Missense_MutationnovelR479H0.35

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.10420.011841
LUADAMP0.18020.040181
PAADAMP0.02720.22288
TGCTDEL0.15330.00046313
UCECAMP0.1020.00024587

Survival Analysis
CancerP-value Q-value
THYM0.019

Kaplan-Meier Survival Analysis

STAD0.019

Kaplan-Meier Survival Analysis

SARC0.022

Kaplan-Meier Survival Analysis

MESO0.0001

Kaplan-Meier Survival Analysis

ACC0.00019

Kaplan-Meier Survival Analysis

SKCM0.00027

Kaplan-Meier Survival Analysis

PRAD0.033

Kaplan-Meier Survival Analysis

PAAD0.015

Kaplan-Meier Survival Analysis

PCPG0.023

Kaplan-Meier Survival Analysis

BLCA0.03

Kaplan-Meier Survival Analysis

LAML0.017

Kaplan-Meier Survival Analysis

UCEC0.0034

Kaplan-Meier Survival Analysis

LIHC0.037

Kaplan-Meier Survival Analysis

LGG0.00037

Kaplan-Meier Survival Analysis

UVM0.00021

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000171793 (Gene tree)
Gene ID
1503
Gene Symbol
CTPS1
Alias
GATD5|CTPS
Full Name
CTP synthase 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
33,267 bases
Position
chr1:40,979,299-41,012,565
Accession
2519
RBP type
non-canonical RBP
Summary
This gene encodes an enzyme responsible for the catalytic conversion of UTP (uridine triphosphate) to CTP (cytidine triphospate). This reaction is an important step in the biosynthesis of phospholipids and nucleic acids. Activity of this proten is important in the immune system, and loss of function of this gene has been associated with immunodeficiency. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000649864CTPS1-2174790-ENSP00000496792564 (aa)--
ENST00000648914CTPS1-2142648-ENSP00000496963451 (aa)--
ENST00000464283CTPS1-205643--- (aa)--
ENST00000498694CTPS1-2112855--- (aa)--
ENST00000649124CTPS1-2152947-ENSP00000497744591 (aa)-UPI0000132D63
ENST00000648020CTPS1-2124006XM_024453561ENSP00000497714335 (aa)XP_024309329-
ENST00000648801CTPS1-2134009--- (aa)--
ENST00000480420CTPS1-2092019--- (aa)--
ENST00000470271CTPS1-206801-ENSP00000497901111 (aa)--
ENST00000463285CTPS1-2031607-ENSP00000497762461 (aa)--
ENST00000650634CTPS1-2194138--- (aa)--
ENST00000372616CTPS1-2012037-ENSP00000361699591 (aa)-P17812
ENST00000486889CTPS1-2105325--- (aa)--
ENST00000479480CTPS1-2081242--- (aa)--
ENST00000463423CTPS1-2041389-ENSP0000049744689 (aa)--
ENST00000372621CTPS1-2023201XM_024453552ENSP00000361704591 (aa)XP_024309320P17812
ENST00000650070CTPS1-2182838-ENSP00000497602591 (aa)-UPI0000132D63
ENST00000649215CTPS1-2161821-ENSP00000497698435 (aa)-B4E1E0
ENST00000475060CTPS1-207813--- (aa)--
Gene Model
Click here to download ENSG00000171793's gene model file
Pathways
Pathway IDPathway NameSource
hsa00240Pyrimidine metabolismKEGG
hsa01100Metabolic pathwaysKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000171793rs61780429140992021?Heel bone mineral density30048462[0.016-0.026] unit increase0.0209349EFO_0009270
ENSG00000171793rs61780429140992021THeel bone mineral density30598549[0.014-0.023] unit increase0.0186918EFO_0009270
ENSG00000171793rs61780431140998462?Heel bone mineral density30595370EFO_0009270
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000171793's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000171793CTPS110076.577YBL039C9858.730Saccharomyces_cerevisiae
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003883CTP synthase activity21873635.IBAFunction
GO:0003883CTP synthase activity16179339.IDAFunction
GO:0003883CTP synthase activity16179339.IGIFunction
GO:0003883CTP synthase activity24870241.IMPFunction
GO:0005524ATP binding-IEAFunction
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol-TASComponent
GO:0006139nucleobase-containing compound metabolic process2113467.TASProcess
GO:0006241CTP biosynthetic process21873635.IBAProcess
GO:0006241CTP biosynthetic process16179339.IDAProcess
GO:0006241CTP biosynthetic process24870241.IMPProcess
GO:0006541glutamine metabolic process-IEAProcess
GO:0015949nucleobase-containing small molecule interconversion-TASProcess
GO:0016020membrane19946888.HDAComponent
GO:0019856pyrimidine nucleobase biosynthetic process21873635.IBAProcess
GO:0042098T cell proliferation24870241.IMPProcess
GO:0042100B cell proliferation24870241.IMPProcess
GO:0042493response to drug7981751.TASProcess
GO:0042802identical protein binding21873635.IBAFunction
GO:0042802identical protein binding25416956.IPIFunction
GO:0044210'de novo' CTP biosynthetic process-IEAProcess
GO:0097268cytoophidium21873635.IBAComponent
GO:0097268cytoophidium25223282.IDAComponent
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