EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr7100706851SilentnovelP7P0.14
BLCAchr7100706989SilentnovelQ53Q0.12
BLCAchr7100707156Missense_MutationnovelD109G0.97Alba
BRCAchr7100706974Frame_Shift_DelnovelA50Pfs*160.19Alba
CESCchr7100707138Missense_MutationnovelS103C0.08Alba
CESCchr71007074263'UTRnovel0.33
COADchr7100707176Missense_MutationnovelD116N0.26Alba
COADchr7100707203Missense_Mutationrs755458828R125C0.27Alba
COADchr71007074193'UTRnovel0.16
GBMchr7100706861Missense_MutationnovelV11M0.07
HNSCchr7100706953Missense_MutationnovelM41I0.09Alba
KIRCchr7100706839Missense_MutationNAE3D0.25
KIRPchr7100707167Missense_MutationnovelP113T0.23Alba
KIRPchr7100707017Nonsense_MutationnovelQ63*0.35Alba
LAMLchr7100707176Missense_MutationnovelD116N0.08Alba
LUADchr7100706970Missense_MutationnovelA47D0.2Alba
LUADchr7100707172Missense_MutationnovelE114D0.36Alba
LUADchr7100707029Missense_MutationnovelS67T0.39Alba
LUSCchr7100707114Missense_MutationnovelS95F0.54Alba
OVchr7100707084Missense_MutationnovelA85V0.16Alba
OVchr7100707202SilentnovelI124I0.08
OVchr71007068295'UTRnovel0.1
SKCMchr7100706910Missense_MutationNAP27L0.27
STADchr7100706936Missense_MutationnovelD36H0.22Alba
STADchr7100706838Frame_Shift_DelnovelN4Tfs*380.22
UCECchr7100706928Missense_MutationnovelR33I0.63Alba
UCECchr7100707250Missense_Mutationrs532407719K140N0.22
UCECchr7100707059Missense_MutationnovelA77T0.23Alba
UCECchr71007072643'UTRnovel0.47
UCECchr71007074653'UTRnovel0.48
UCECchr7100706898Missense_Mutationrs761545949R23M0.59
UCECchr7100706924SilentnovelR32R0.25
UCECchr71007073003'UTRnovel0.45
UCECchr7100707082SilentnovelI84I0.28
UCECchr71007074703'UTRnovel0.4
UCECchr7100707036Missense_MutationNAI69T0.31Alba
UCECchr71007072573'UTRrs3705052320.16
UCECchr7100706959Silentrs779406811T43T0.16
UCECchr71007073003'UTRnovel0.54

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.05560.12261
DLBCAMP0.29170.13215
LGGAMP0.29431.5525e-07
LIHCDEL0.05950.24831
PAADDEL0.0380.049388
PRADAMP0.14230.012709
TGCTAMP0.62670.035574
THCADEL0.0020.27619

Survival Analysis
CancerP-value Q-value
KIRC0.00013

Kaplan-Meier Survival Analysis

STAD0.033

Kaplan-Meier Survival Analysis

MESO0.032

Kaplan-Meier Survival Analysis

ACC0.016

Kaplan-Meier Survival Analysis

SKCM0.025

Kaplan-Meier Survival Analysis

LUSC0.00089

Kaplan-Meier Survival Analysis

CESC0.016

Kaplan-Meier Survival Analysis

READ0.032

Kaplan-Meier Survival Analysis

KICH0.027

Kaplan-Meier Survival Analysis

UCEC0.00091

Kaplan-Meier Survival Analysis

LIHC0.00041

Kaplan-Meier Survival Analysis

DLBC0.013

Kaplan-Meier Survival Analysis

UVM0.0001

Kaplan-Meier Survival Analysis

OV0.02

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000172336 (Gene tree)
Gene ID
10248
Gene Symbol
POP7
Alias
RPP20|RPP2
Full Name
POP7 homolog, ribonuclease P/MRP subunit
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
1,448 bases
Position
chr7:100,706,053-100,707,500
Accession
19949
RBP type
canonical RBP
Summary
(POP7 Homolog, Ribonuclease P/MRP Subunit) is a Protein Coding gene. Among its related pathways are Gene Expression and tRNA processing. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and ribonuclease P activity.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000387814AlbaPF01918.214.5e-0911
ENSP00000304353AlbaPF01918.214.6e-0911
ENSP00000387814Rpp20PF12328.81.2e-1911
ENSP00000304353Rpp20PF12328.81.4e-1911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
20215441Heterodimerization of the human RNase P/MRP subunits Rpp20 and Rpp25 is a prerequisite for interaction with the P3 arm of RNase MRP RNA.Nucleic Acids Res2010 JulHands-Taylor KLdoi: 10.1093/nar/gkq141
17119099Heterodimerization regulates RNase MRP/RNase P association, localization, and expression of Rpp20 and Rpp25.RNA2007 JanWelting TJ-
29625199Crystal Structure of Human Rpp20/Rpp25 Reveals Quaternary Level Adaptation of the Alba Scaffold as Structural Basis for Single-stranded RNA Binding.J Mol Biol2018 May 11Chan CWdoi: 10.1016/j.jmb.2018.03.029
27156450Active Yeast Telomerase Shares Subunits with Ribonucleoproteins RNase P and RNase MRP.Cell2016 May 19Lemieux Bdoi: 10.1016/j.cell.2016.04.018
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000303151POP7-201927-ENSP00000304353140 (aa)-O75817
ENST00000457480POP7-202483-ENSP00000387814137 (aa)-C9JYM0
Gene Model
Click here to download ENSG00000172336's gene model file
Pathways
Pathway IDPathway NameSource
hsa03008Ribosome biogenesis in eukaryotesKEGG
hsa03013RNA transportKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000172336Schizophrenia4E-626198764
ENSG00000172336Inflammatory Bowel Diseases2E-1323128233
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000172336's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000172336POP78974.194ENSAPOG00000015722pop710066.197Acanthochromis_polyacanthus
ENSG00000172336POP79671.429ENSACIG00000022071pop79372.180Amphilophus_citrinellus
ENSG00000172336POP78974.194ENSAOCG00000021222pop78272.093Amphiprion_ocellaris
ENSG00000172336POP78974.194ENSAPEG00000018819pop78272.093Amphiprion_percula
ENSG00000172336POP79571.212ENSATEG00000017615pop78869.343Anabas_testudineus
ENSG00000172336POP710098.571ENSANAG00000019054POP710098.571Aotus_nancymaae
ENSG00000172336POP78974.194ENSACLG00000018898pop77974.194Astatotilapia_calliptera
ENSG00000172336POP78877.236ENSAMXG00000025789pop78477.236Astyanax_mexicanus
ENSG00000172336POP710098.571ENSCJAG00000015056POP710098.571Callithrix_jacchus
ENSG00000172336POP710098.571ENSCAFG00000014205POP710098.571Canis_familiaris
ENSG00000172336POP710098.571ENSCAFG00020013863POP710098.571Canis_lupus_dingo
ENSG00000172336POP710097.857ENSCHIG00000013484POP710097.857Capra_hircus
ENSG00000172336POP710095.714ENSTSYG00000035016POP710095.714Carlito_syrichta
ENSG00000172336POP710097.857ENSCPOG00000005767POP710097.857Cavia_porcellus
ENSG00000172336POP710098.571ENSCCAG00000008898POP710098.571Cebus_capucinus
ENSG00000172336POP710098.571ENSCATG00000010371POP710098.571Cercocebus_atys
ENSG00000172336POP710097.857ENSCLAG00000001541POP710097.857Chinchilla_lanigera
ENSG00000172336POP710098.571ENSCSAG00000017937POP710098.571Chlorocebus_sabaeus
ENSG00000172336POP710099.286ENSCANG00000000652POP710099.286Colobus_angolensis_palliatus
ENSG00000172336POP710095.714ENSCGRG00001010593Pop710095.714Cricetulus_griseus_chok1gshd
ENSG00000172336POP710095.714ENSCGRG00000019940Pop710095.714Cricetulus_griseus_crigri
ENSG00000172336POP78974.194ENSCSEG00000013197pop79672.093Cynoglossus_semilaevis
ENSG00000172336POP79371.318ENSCVAG00000016728pop78569.403Cyprinodon_variegatus
ENSG00000172336POP79470.229ENSDARG00000036394pop78668.889Danio_rerio
ENSG00000172336POP710097.143ENSDNOG00000031207POP76497.143Dasypus_novemcinctus
ENSG00000172336POP710095.000ENSDORG00000012512Pop710095.000Dipodomys_ordii
ENSG00000172336POP78144.828FBgn0066304Rpp206644.828Drosophila_melanogaster
ENSG00000172336POP710092.143ENSETEG00000007941POP710092.143Echinops_telfairi
ENSG00000172336POP710097.857ENSEASG00005016994POP710097.857Equus_asinus_asinus
ENSG00000172336POP710097.857ENSECAG00000010383POP710097.857Equus_caballus
ENSG00000172336POP78172.566ENSELUG00000023947pop78870.339Esox_lucius
ENSG00000172336POP710098.571ENSFCAG00000006849POP710098.571Felis_catus
ENSG00000172336POP710098.571ENSFDAG00000018839POP710098.571Fukomys_damarensis
ENSG00000172336POP79470.677ENSFHEG00000012595pop78570.677Fundulus_heteroclitus
ENSG00000172336POP78974.194ENSGAFG00000017633pop78272.093Gambusia_affinis
ENSG00000172336POP79074.400ENSGACG00000019931pop77974.400Gasterosteus_aculeatus
ENSG00000172336POP7100100.000ENSGGOG00000016492POP7100100.000Gorilla_gorilla
ENSG00000172336POP78970.968ENSHBUG00000011987pop79070.968Haplochromis_burtoni
ENSG00000172336POP710097.143ENSHGLG00000018118POP710097.143Heterocephalus_glaber_female
ENSG00000172336POP710097.143ENSHGLG00100007908POP710097.143Heterocephalus_glaber_male
ENSG00000172336POP78975.000ENSHCOG00000010137pop78273.438Hippocampus_comes
ENSG00000172336POP78975.000ENSIPUG00000000411pop77975.000Ictalurus_punctatus
ENSG00000172336POP710097.143ENSSTOG00000030883POP710097.143Ictidomys_tridecemlineatus
ENSG00000172336POP710097.857ENSJJAG00000003989Pop710097.857Jaculus_jaculus
ENSG00000172336POP78974.194ENSKMAG00000010696pop78272.093Kryptolebias_marmoratus
ENSG00000172336POP78973.387ENSLBEG00000003483pop78971.318Labrus_bergylta
ENSG00000172336POP78872.358ENSLBEG00000008621pop77772.358Labrus_bergylta
ENSG00000172336POP710073.288ENSLACG00000010203POP710073.288Latimeria_chalumnae
ENSG00000172336POP79372.656ENSLOCG00000017553pop78375.000Lepisosteus_oculatus
ENSG00000172336POP710092.143ENSLAFG00000030032POP710092.143Loxodonta_africana
ENSG00000172336POP710098.571ENSMFAG00000027783POP710098.571Macaca_fascicularis
ENSG00000172336POP710098.571ENSMMUG00000008581POP710098.571Macaca_mulatta
ENSG00000172336POP710098.571ENSMNEG00000037495POP710098.571Macaca_nemestrina
ENSG00000172336POP710098.571ENSMLEG00000027597POP710098.571Mandrillus_leucophaeus
ENSG00000172336POP79969.286ENSMAMG00000007258pop79669.286Mastacembelus_armatus
ENSG00000172336POP78970.968ENSMZEG00005005138pop79070.968Maylandia_zebra
ENSG00000172336POP79771.111ENSMZEG00005022194-8871.111Maylandia_zebra
ENSG00000172336POP710092.143ENSMAUG00000015820Pop710092.143Mesocricetus_auratus
ENSG00000172336POP710098.571ENSMICG00000009398POP710098.571Microcebus_murinus
ENSG00000172336POP710096.429ENSMOCG00000013694Pop710096.429Microtus_ochrogaster
ENSG00000172336POP78971.774ENSMMOG00000014095pop79072.093Mola_mola
ENSG00000172336POP710087.324ENSMODG00000023662POP710090.845Monodelphis_domestica
ENSG00000172336POP78974.194ENSMALG00000011180pop79274.194Monopterus_albus
ENSG00000172336POP710095.000MGP_CAROLIEiJ_G0027876Pop710095.000Mus_caroli
ENSG00000172336POP710095.000ENSMUSG00000029715Pop710095.000Mus_musculus
ENSG00000172336POP710097.857MGP_PahariEiJ_G0024462Pop710097.857Mus_pahari
ENSG00000172336POP710095.000MGP_SPRETEiJ_G0028881Pop710095.000Mus_spretus
ENSG00000172336POP710097.810ENSMPUG00000019765POP710097.143Mustela_putorius_furo
ENSG00000172336POP710095.000ENSMLUG00000010110POP710095.000Myotis_lucifugus
ENSG00000172336POP710095.000ENSNGAG00000021630Pop710095.000Nannospalax_galili
ENSG00000172336POP78973.387ENSNBRG00000006286pop78773.387Neolamprologus_brichardi
ENSG00000172336POP710098.571ENSNLEG00000011939POP710098.571Nomascus_leucogenys
ENSG00000172336POP75496.000ENSOPRG00000015185POP710096.000Ochotona_princeps
ENSG00000172336POP710097.857ENSODEG00000020363POP710097.857Octodon_degus
ENSG00000172336POP710082.857ENSOANG00000001658POP710082.857Ornithorhynchus_anatinus
ENSG00000172336POP710097.143ENSOCUG00000007818POP710097.143Oryctolagus_cuniculus
ENSG00000172336POP78875.610ENSORLG00000003594pop78874.016Oryzias_latipes
ENSG00000172336POP79374.419ENSORLG00020017530pop77972.932Oryzias_latipes_hni
ENSG00000172336POP79971.014ENSORLG00015015310pop710069.718Oryzias_latipes_hsok
ENSG00000172336POP79076.000ENSOMEG00000003667pop78176.000Oryzias_melastigma
ENSG00000172336POP710097.143ENSOGAG00000009340POP710097.143Otolemur_garnettii
ENSG00000172336POP7100100.000ENSPPAG00000015339POP7100100.000Pan_paniscus
ENSG00000172336POP710098.571ENSPPRG00000018408POP710098.571Panthera_pardus
ENSG00000172336POP710098.571ENSPTIG00000005807POP710098.571Panthera_tigris_altaica
ENSG00000172336POP7100100.000ENSPTRG00000019504POP7100100.000Pan_troglodytes
ENSG00000172336POP7100100.000ENSPTRG00000047460-100100.000Pan_troglodytes
ENSG00000172336POP710098.571ENSPANG00000006196POP710098.571Papio_anubis
ENSG00000172336POP79372.656ENSPKIG00000019869pop77672.180Paramormyrops_kingsleyae
ENSG00000172336POP77570.476ENSPSIG00000000415POP79270.732Pelodiscus_sinensis
ENSG00000172336POP79670.073ENSPMGG00000011142pop79670.073Periophthalmus_magnuspinnatus
ENSG00000172336POP710095.714ENSPEMG00000011583Pop710095.714Peromyscus_maniculatus_bairdii
ENSG00000172336POP710087.324ENSPCIG00000000517POP77288.732Phascolarctos_cinereus
ENSG00000172336POP78974.194ENSPFOG00000019976pop78272.093Poecilia_formosa
ENSG00000172336POP78974.194ENSPLAG00000007700pop78272.093Poecilia_latipinna
ENSG00000172336POP78974.194ENSPMEG00000010673pop78272.093Poecilia_mexicana
ENSG00000172336POP78974.194ENSPREG00000015137pop78272.093Poecilia_reticulata
ENSG00000172336POP710099.286ENSPPYG00000017426POP710099.286Pongo_abelii
ENSG00000172336POP710092.857ENSPCAG00000010445POP710092.857Procavia_capensis
ENSG00000172336POP710098.571ENSPCOG00000009302POP710098.571Propithecus_coquereli
ENSG00000172336POP78590.756ENSPCOG00000018009-8890.756Propithecus_coquereli
ENSG00000172336POP78970.968ENSPNYG00000000975pop79070.968Pundamilia_nyererei
ENSG00000172336POP78975.000ENSPNAG00000007206pop78675.000Pygocentrus_nattereri
ENSG00000172336POP710096.429ENSRNOG00000025310Pop710096.429Rattus_norvegicus
ENSG00000172336POP710099.286ENSRBIG00000002671POP710099.286Rhinopithecus_bieti
ENSG00000172336POP710099.286ENSRROG00000028543POP710099.286Rhinopithecus_roxellana
ENSG00000172336POP710096.429ENSSBOG00000005173POP710096.429Saimiri_boliviensis_boliviensis
ENSG00000172336POP710086.620ENSSHAG00000001026POP710088.028Sarcophilus_harrisii
ENSG00000172336POP78974.797ENSSFOG00015007957pop78274.797Scleropages_formosus
ENSG00000172336POP79869.853ENSSMAG00000015536pop79968.085Scophthalmus_maximus
ENSG00000172336POP79870.588ENSSDUG00000022172pop79068.794Seriola_dumerili
ENSG00000172336POP78071.429ENSSLDG00000019818pop79169.231Seriola_lalandi_dorsalis
ENSG00000172336POP78973.387ENSSPAG00000000652pop77671.875Stegastes_partitus
ENSG00000172336POP710097.857ENSSSCG00000007672POP710097.857Sus_scrofa
ENSG00000172336POP79967.857ENSTRUG00000024340-9970.000Takifugu_rubripes
ENSG00000172336POP79369.697ENSTRUG00000023845pop78471.970Takifugu_rubripes
ENSG00000172336POP79568.939ENSTNIG00000001259pop78371.212Tetraodon_nigroviridis
ENSG00000172336POP710097.857ENSTBEG00000001849POP710097.857Tupaia_belangeri
ENSG00000172336POP710097.857ENSTTRG00000011012POP710097.857Tursiops_truncatus
ENSG00000172336POP710097.857ENSUAMG00000028076POP710097.857Ursus_americanus
ENSG00000172336POP710097.857ENSUMAG00000010895POP710097.857Ursus_maritimus
ENSG00000172336POP710098.571ENSVVUG00000023472POP710098.571Vulpes_vulpes
ENSG00000172336POP78873.770ENSXCOG00000012016pop78170.543Xiphophorus_couchianus
ENSG00000172336POP78974.194ENSXMAG00000019746pop78272.093Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000172ribonuclease MRP complex16723659.IDAComponent
GO:0001682tRNA 5'-leader removal16723659.30454648.IDAProcess
GO:0001682tRNA 5'-leader removal-TASProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0004526ribonuclease P activity21873635.IBAFunction
GO:0004526ribonuclease P activity16723659.30454648.IDAFunction
GO:0005515protein binding14715275.15096576.25416956.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005730nucleolus-IEAComponent
GO:0005737cytoplasm-IEAComponent
GO:0008033tRNA processing21873635.IBAProcess
GO:0030681multimeric ribonuclease P complex16723659.30454648.IDAComponent
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic-IEAProcess
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