EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1183648007Missense_MutationNAE259Q0.1
BLCAchr1183648484Missense_MutationnovelE100Q0.08APOBEC_N
BLCAchr1183648270Missense_Mutationrs139605657R171H0.2APOBEC_N
BLCAchr1183648703Missense_MutationnovelD27N0.29
BLCAchr1183648572Frame_Shift_InsnovelE70Dfs*120.04APOBEC_N
BLCAchr1183648129Missense_MutationnovelR218T0.4
BLCAchr1183647684Missense_MutationnovelK366N0.16
BLCAchr1183647707Missense_MutationNAE359K0.12
BRCAchr1183648270Missense_Mutationrs139605657R171H0.42APOBEC_N
BRCAchr1183647861SilentNAG307G0.58
BRCAchr1183647804SilentnovelS326S0.09
CESCchr1183648661Missense_MutationNAA41S0.49
CESCchr1183648235Missense_MutationNAR183W0.3APOBEC_N
CESCchr1183648007Missense_MutationNAE259Q0.3
CHOLchr1183648487Missense_MutationnovelF99I0.13APOBEC_N
COADchr1183647814Missense_Mutationrs370218327P323L0.35
COADchr1183648237Missense_Mutationrs756203206P182L0.47APOBEC_N
COADchr1183648149Frame_Shift_DelnovelQ212Sfs*40.13
COADchr1183647812Missense_MutationNAQ324K0.22
COADchr1183647766Missense_MutationnovelG339E0.13
COADchr1183648519Missense_MutationNAT88I0.35APOBEC_N
COADchr1183648495Nonsense_MutationNAS96*0.25APOBEC_N
COADchr1183648002SilentnovelS260S0.17
COADchr1183648667Frame_Shift_InsnovelE39Tfs*330.07
COADchr1183648668Frame_Shift_InsnovelE39*0.03
COADchr1183648051In_Frame_DelNAL244del0.43
COADchr1183648079Missense_Mutationrs760123722V235I0.32
KIRCchr1183648193Missense_MutationNAV197F0.39APOBEC_N
LAMLchr1183648466Missense_MutationNAD106N0.04APOBEC_N
LAMLchr11836475883'UTRnovel0.11
LGGchr1183648459Missense_MutationNAA108V0.13APOBEC_N
LIHCchr1183648035Missense_MutationNAN249K0.25
LIHCchr1183648193Missense_MutationnovelV197L0.33APOBEC_N
LIHCchr11836475233'UTRnovel0.29
LUADchr1183647800Missense_MutationNAQ328K0.07
LUADchr1183648545SilentnovelV79V0.2
LUADchr11836475993'UTRnovel0.07
LUADchr1183648342Missense_MutationnovelG147V0.14APOBEC_N
LUADchr1183647832Missense_MutationnovelV317A0.11
LUADchr1183648741Missense_MutationNAT14I0.15
LUADchr11836475703'UTRnovel0.17
LUADchr1183648722Nonsense_MutationNAY20*0.24
LUSCchr1183647965Frame_Shift_DelnovelQ273Kfs*230.2
LUSCchr1183648351Missense_Mutationrs779521158T144M0.12APOBEC_N
OVchr11836475943'UTRnovel0.05
OVchr1183648661Missense_MutationNAA41T0.33
PRADchr1183648554SilentNAG76G0.12
READchr1183648235Missense_MutationNAR183W0.12APOBEC_N
READchr1183648334Missense_MutationNAL150I0.35APOBEC_N
READchr1183648065Missense_MutationNAF239L0.37
SKCMchr11836476663'UTRnovel0.06
SKCMchr11836476673'UTRnovel0.06
SKCMchr11836476573'UTRnovel0.15
SKCMchr1183647884Missense_MutationnovelD300N0.22
SKCMchr1183648188SilentNAL198L0.11
SKCMchr1183648074SilentnovelK236K0.39
SKCMchr1183648275Nonsense_MutationnovelW169*0.06APOBEC_N
STADchr1183648106Missense_Mutationrs776471890A226T0.15
STADchr1183648177Frame_Shift_InsnovelI202Kfs*240.05APOBEC_N
STADchr1183648676Nonsense_Mutationrs778262711R36*0.34
UCECchr1183647678Silentnovel*368*0.07
UCECchr1183648219Missense_MutationNAP188L0.48APOBEC_N
UCECchr11836473913'UTRnovel0.27
UCECchr1183647809Frame_Shift_DelnovelM325Cfs*200.4
UCECchr1183648675Missense_Mutationrs753388975R36Q0.16
UCECchr1183648351Missense_Mutationrs779521158T144M0.59APOBEC_N
UCECchr1183648127Missense_MutationNAA219T0.29
UCECchr11836476613'UTRrs2014581080.31
UCECchr1183647781Missense_MutationnovelG334V0.51
UCECchr1183648237Missense_Mutationrs756203206P182L0.31APOBEC_N
UCECchr1183648683SilentnovelY33Y0.26
UCECchr1183648268Missense_Mutationrs141963987E172K0.51APOBEC_N
UCECchr1183647713Missense_MutationNAA357T0.33
UCECchr11836476193'UTRnovel0.23
UCECchr1183647807Missense_MutationNAM325I0.46
UCECchr1183648020SilentnovelA254A0.19
UCECchr1183648080Silentrs576673661G234G0.27
UCECchr1183648488SilentnovelL98L0.33
UCECchr1183648350Silentrs549816614T144T0.06
UCECchr1183647985Missense_MutationnovelA266V0.21
UCECchr1183648579Missense_MutationNAF68C0.34APOBEC_N
UCECchr1183648023Missense_Mutationrs775980223K253N0.6
UCECchr1183648268Missense_Mutationrs141963987E172K0.32APOBEC_N

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.04170.0017831
KIRCAMP0.08710.059566
PAADAMP0.22830.085665
READAMP0.27880.14328
TGCTAMP0.34670.088103
THCAAMP0.05010.075436

Survival Analysis
CancerP-value Q-value
TGCT0.042

Kaplan-Meier Survival Analysis

PAAD0.0011

Kaplan-Meier Survival Analysis

UCEC0.0086

Kaplan-Meier Survival Analysis

LUAD0.026

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000173627 (Gene tree)
Gene ID
403314
Gene Symbol
APOBEC4
Alias
MGC26594|FLJ25691|RP1-127C7.4|C1orf169
Full Name
apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
7,042 bases
Position
chr1:183,646,275-183,653,316
Accession
32152
RBP type
canonical RBP
Summary
This gene encodes a member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases, which convert cytidine to uridine. Other AID/APOBEC family members are involved in mRNA editing, somatic hypermutation and recombination of immunoglobulin genes, and innate immunity to retroviral infection. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000310622APOBEC_NPF08210.114.8e-2811
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000308641APOBEC4-2012650-ENSP00000310622367 (aa)-Q8WW27
ENST00000481562APOBEC4-202476--- (aa)--
Gene Model
Click here to download ENSG00000173627's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000173627Lupus Erythematosus, Systemic6E-623273568
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000173627rs109113901183647749TSystemic lupus erythematosus232735681.13EFO_0002690
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000173627's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000173627APOBEC49883.844ENSAMEG00000002503APOBEC49483.844Ailuropoda_melanoleuca
ENSG00000173627APOBEC49554.085ENSACAG00000015192APOBEC49854.857Anolis_carolinensis
ENSG00000173627APOBEC49680.226ENSBTAG00000047395APOBEC49880.501Bos_taurus
ENSG00000173627APOBEC49889.694ENSCJAG00000040026APOBEC49789.694Callithrix_jacchus
ENSG00000173627APOBEC49882.173ENSCAFG00000013349APOBEC49882.173Canis_familiaris
ENSG00000173627APOBEC49882.173ENSCAFG00020015526APOBEC49882.173Canis_lupus_dingo
ENSG00000173627APOBEC49678.531ENSCHIG00000011987APOBEC49378.273Capra_hircus
ENSG00000173627APOBEC49891.086ENSCSAG00000000243APOBEC49891.086Chlorocebus_sabaeus
ENSG00000173627APOBEC410080.926ENSCHOG00000012387APOBEC49880.780Choloepus_hoffmanni
ENSG00000173627APOBEC49954.496ENSCPBG00000015714APOBEC49554.596Chrysemys_picta_bellii
ENSG00000173627APOBEC49365.306ENSCGRG00001004553Apobec49565.306Cricetulus_griseus_chok1gshd
ENSG00000173627APOBEC49683.051ENSDNOG00000044664APOBEC49882.730Dasypus_novemcinctus
ENSG00000173627APOBEC49866.017ENSDORG00000007335Apobec49966.017Dipodomys_ordii
ENSG00000173627APOBEC49983.471ENSEASG00005006513APOBEC49883.471Equus_asinus_asinus
ENSG00000173627APOBEC49983.471ENSECAG00000019734APOBEC49883.471Equus_caballus
ENSG00000173627APOBEC49882.173ENSFCAG00000010909APOBEC49882.173Felis_catus
ENSG00000173627APOBEC48577.885ENSFDAG00000018185APOBEC49877.885Fukomys_damarensis
ENSG00000173627APOBEC48949.390ENSGALG00000053078APOBEC49449.091Gallus_gallus
ENSG00000173627APOBEC410098.641ENSGGOG00000042217APOBEC410098.641Gorilla_gorilla
ENSG00000173627APOBEC49950.811ENSLACG00000014504APOBEC49751.648Latimeria_chalumnae
ENSG00000173627APOBEC46037.220ENSLOCG00000010326-8836.400Lepisosteus_oculatus
ENSG00000173627APOBEC49892.479ENSMMUG00000031303APOBEC49892.479Macaca_mulatta
ENSG00000173627APOBEC49347.661ENSMGAG00000017190APOBEC49549.074Meleagris_gallopavo
ENSG00000173627APOBEC410062.500MGP_CAROLIEiJ_G0014701Apobec49463.056Mus_caroli
ENSG00000173627APOBEC410061.685ENSMUSG00000055547Apobec49462.222Mus_musculus
ENSG00000173627APOBEC410062.500MGP_PahariEiJ_G0027937Apobec49463.056Mus_pahari
ENSG00000173627APOBEC410060.870MGP_SPRETEiJ_G0015508Apobec49461.389Mus_spretus
ENSG00000173627APOBEC49680.508ENSMPUG00000011756APOBEC49580.780Mustela_putorius_furo
ENSG00000173627APOBEC49677.966ENSMLUG00000002458APOBEC49877.437Myotis_lucifugus
ENSG00000173627APOBEC49859.610ENSNGAG00000017599Apobec49759.444Nannospalax_galili
ENSG00000173627APOBEC410096.739ENSNLEG00000035610APOBEC410096.739Nomascus_leucogenys
ENSG00000173627APOBEC48974.312ENSODEG00000009778APOBEC49573.494Octodon_degus
ENSG00000173627APOBEC49559.322ENSOANG00000001000APOBEC49858.678Ornithorhynchus_anatinus
ENSG00000173627APOBEC49878.273ENSOGAG00000003118APOBEC49878.273Otolemur_garnettii
ENSG00000173627APOBEC49679.944ENSOARG00000005287APOBEC49879.666Ovis_aries
ENSG00000173627APOBEC410094.823ENSPPAG00000038272APOBEC410094.823Pan_paniscus
ENSG00000173627APOBEC49883.008ENSPPRG00000014706APOBEC49883.008Panthera_pardus
ENSG00000173627APOBEC49882.730ENSPTIG00000005518APOBEC49882.730Panthera_tigris_altaica
ENSG00000173627APOBEC410098.365ENSPTRG00000047181APOBEC410098.365Pan_troglodytes
ENSG00000173627APOBEC49668.732ENSPEMG00000019164Apobec49868.889Peromyscus_maniculatus_bairdii
ENSG00000173627APOBEC45934.599ENSPMAG00000006156APOBEC49730.919Petromyzon_marinus
ENSG00000173627APOBEC49867.598ENSPCIG00000003817APOBEC49567.409Phascolarctos_cinereus
ENSG00000173627APOBEC49895.543ENSPPYG00000000424APOBEC49895.543Pongo_abelii
ENSG00000173627APOBEC49861.838ENSPCAG00000015174APOBEC49861.667Procavia_capensis
ENSG00000173627APOBEC49882.730ENSPVAG00000001100APOBEC49882.730Pteropus_vampyrus
ENSG00000173627APOBEC410062.060ENSRNOG00000028089Apobec49162.327Rattus_norvegicus
ENSG00000173627APOBEC49665.819ENSSHAG00000013804APOBEC49865.278Sarcophilus_harrisii
ENSG00000173627APOBEC49953.279ENSSPUG00000010884APOBEC49553.782Sphenodon_punctatus
ENSG00000173627APOBEC410080.926ENSSSCG00000015561APOBEC49881.058Sus_scrofa
ENSG00000173627APOBEC49880.780ENSTBEG00000006476APOBEC49880.780Tupaia_belangeri
ENSG00000173627APOBEC49881.564ENSTTRG00000014784APOBEC49881.337Tursiops_truncatus
ENSG00000173627APOBEC49683.523ENSUAMG00000005088APOBEC49883.565Ursus_americanus
ENSG00000173627APOBEC49683.239ENSUMAG00000016285APOBEC49883.287Ursus_maritimus
ENSG00000173627APOBEC49881.616ENSVVUG00000009054APOBEC49881.616Vulpes_vulpes
ENSG00000173627APOBEC49946.757ENSXETG00000017441apobec49446.518Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0006397mRNA processing-IEAProcess
GO:0016787hydrolase activity-IEAFunction
GO:0046872metal ion binding-IEAFunction
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