EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
12472661Recognition of ADP-ribosylation factor 4-like by HLA-A2-restricted and tumor-reactive cytotoxic T lymphocytes from patients with brain tumors.Tissue Antigens2002 OctNonaka Y-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1743400234Missense_MutationnovelC168R0.37
BLCAchr1743400161SilentNAL143L0.33
BLCAchr1743399924Silentrs779395257L64L0.44
BLCAchr17433997005'UTRnovel0.13
BLCAchr1743400094Missense_MutationnovelR121Q0.54MMR_HSR1
CESCchr17434008983'UTRnovel0.33
CESCchr1743400054Missense_MutationNAR108W0.14MMR_HSR1
CESCchr17434007153'UTRnovel0.31
CESCchr1743400161SilentNAL143L0.2
COADchr17434011103'UTRnovel0.28
COADchr17434003453'UTRNA0.19
COADchr1743400114Missense_MutationNAV128M0.32MMR_HSR1
COADchr17434003453'UTRNA0.12
COADchr17434003453'UTRNA0.26
COADchr17434010063'UTRnovel0.12
COADchr17434003453'UTRNA0.19
COADchr17434003453'UTRNA0.21
COADchr17434006373'UTRnovel0.29
COADchr1743399994Missense_MutationNAR88C0.41MMR_HSR1
ESCAchr17433996905'UTRrs3765753580.29
GBMchr1743399868Missense_MutationNAF46I0.44MMR_HSR1
GBMchr1743400307Missense_MutationnovelK192M0.09
GBMchr1743399758Missense_MutationNAA9V0.34
HNSCchr17434003453'UTRNA0.48
HNSCchr1743399848Missense_MutationnovelY39F0.32MMR_HSR1
KIRPchr17434007013'UTRnovel0.35
KIRPchr17434011153'UTRnovel0.26
LGGchr1743400113SilentnovelG127G0.25
LIHCchr17434004213'UTRnovel0.25
LIHCchr17434009383'UTRnovel0.43
LUADchr1743400312Missense_MutationNAA194S0.32
LUADchr1743399964Missense_MutationNAG78W0.63MMR_HSR1
LUADchr1743400018Missense_MutationnovelG96C0.16MMR_HSR1
LUADchr1743400007Missense_MutationNAR92L0.34MMR_HSR1
LUSCchr1743400144Missense_MutationnovelD138Y0.22
OVchr1743400329Missense_MutationnovelK199N0.33
OVchr1743399782Missense_MutationNAP17R0.46
PAADchr1743399758Missense_MutationNAA9V0.23
PAADchr1743400179Missense_MutationnovelE149D0.26
SARCchr17434003433'UTRrs7639644060.6
SARCchr17434003633'UTRnovel0.59
SARCchr1743400158SilentnovelA142A0.46
SARCchr1743399933SilentnovelS67S0.12
SKCMchr1743400060Frame_Shift_InsnovelE111Gfs*370.15MMR_HSR1
SKCMchr17433996785'UTRnovel0.23
SKCMchr1743400009Missense_MutationNAR93W0.17MMR_HSR1
STADchr17434003453'UTRNA0.33
STADchr17434003453'UTRNA0.43
STADchr17433996855'UTRnovel0.38
STADchr1743400243Missense_MutationNAV171L0.42
STADchr17434003453'UTRNA0.3
STADchr1743399942SilentNAI70I0.28
STADchr17434003453'UTRNA0.35
STADchr17434003453'UTRNA0.62
UCECchr1743400159SilentnovelL143L0.53
UCECchr17434010483'UTRnovel0.55
UCECchr17434004413'UTRnovel0.36
UCECchr1743399983Missense_MutationNAR84Q0.38MMR_HSR1
UCECchr1743399963Frame_Shift_Insrs758198899Q80Afs*280.33MMR_HSR1
UCECchr17434011103'UTRnovel0.3
UCECchr17434008913'UTRnovel0.41
UCECchr17434007923'UTRnovel0.44
UCECchr17434006433'UTRnovel0.36
UCECchr1743399840SilentnovelS36S0.17
UCECchr17434007293'UTRnovel0.06
UCECchr1743399857Missense_MutationnovelK42R0.49MMR_HSR1

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.26670.0017784
BRCADEL0.34.8302e-10
DLBCDEL0.02080.18166
THCADEL0.0020.221
UCECDEL0.18925.8317e-06
UCSDEL0.39290.19877
UVMDEL0.03750.22482

Survival Analysis
CancerP-value Q-value
THYM0.041

Kaplan-Meier Survival Analysis

KIRC0.0044

Kaplan-Meier Survival Analysis

SARC0.006

Kaplan-Meier Survival Analysis

MESO0.0027

Kaplan-Meier Survival Analysis

UCS0.024

Kaplan-Meier Survival Analysis

HNSC0.0024

Kaplan-Meier Survival Analysis

SKCM0.01

Kaplan-Meier Survival Analysis

BRCA0.029

Kaplan-Meier Survival Analysis

BLCA0.022

Kaplan-Meier Survival Analysis

READ0.023

Kaplan-Meier Survival Analysis

LAML0.022

Kaplan-Meier Survival Analysis

UCEC0.0001

Kaplan-Meier Survival Analysis

CHOL0.04

Kaplan-Meier Survival Analysis

THCA0.014

Kaplan-Meier Survival Analysis

LUAD0.0054

Kaplan-Meier Survival Analysis

UVM0.0017

Kaplan-Meier Survival Analysis

Drugs

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Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000175906 (Gene tree)
Gene ID
379
Gene Symbol
ARL4D
Alias
ARF4L
Full Name
ADP ribosylation factor like GTPase 4D
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
2,179 bases
Position
chr17:43,398,959-43,401,137
Accession
656
RBP type
canonical RBP
Summary
ADP-ribosylation factor 4D is a member of the ADP-ribosylation factor family of GTP-binding proteins. ARL4D is closely similar to ARL4A and ARL4C and each has a nuclear localization signal and an unusually high guanine nucleotide exchange rate. This protein may play a role in membrane-associated intracellular trafficking. Mutations in this gene have been associated with Bardet-Biedl syndrome (BBS). [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000322628MMR_HSR1PF01926.233.1e-0711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000320033ARL4D-2011612XM_011524782ENSP00000322628201 (aa)XP_011523084P49703
Gene Model
Click here to download ENSG00000175906's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000175906's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000175906ARL4D10099.005ENSAMEG00000019914ARL4D10099.005Ailuropoda_melanoleuca
ENSG00000175906ARL4D10072.139ENSACIG00000013359arl4d9972.139Amphilophus_citrinellus
ENSG00000175906ARL4D10071.921ENSACIG00000018839-10071.921Amphilophus_citrinellus
ENSG00000175906ARL4D10073.399ENSATEG00000010065-10073.399Anabas_testudineus
ENSG00000175906ARL4D10075.622ENSACAG00000013300ARL4D10075.622Anolis_carolinensis
ENSG00000175906ARL4D10099.005ENSANAG00000009266ARL4D10099.005Aotus_nancymaae
ENSG00000175906ARL4D10072.637ENSACLG00000024991arl4d9972.637Astatotilapia_calliptera
ENSG00000175906ARL4D9970.792ENSACLG00000011811-9970.792Astatotilapia_calliptera
ENSG00000175906ARL4D10097.015ENSBTAG00000016847ARL4D10097.015Bos_taurus
ENSG00000175906ARL4D10099.502ENSCJAG00000010785ARL4D10099.502Callithrix_jacchus
ENSG00000175906ARL4D10099.005ENSCAFG00000014581ARL4D10099.005Canis_familiaris
ENSG00000175906ARL4D10099.005ENSCAFG00020012929ARL4D10099.005Canis_lupus_dingo
ENSG00000175906ARL4D10096.517ENSCHIG00000005944ARL4D10096.517Capra_hircus
ENSG00000175906ARL4D10084.080ENSCPOG00000000435ARL4D10084.080Cavia_porcellus
ENSG00000175906ARL4D10099.502ENSCCAG00000014166ARL4D10099.502Cebus_capucinus
ENSG00000175906ARL4D10099.502ENSCATG00000020255ARL4D10099.502Cercocebus_atys
ENSG00000175906ARL4D10084.080ENSCLAG00000018100ARL4D10085.075Chinchilla_lanigera
ENSG00000175906ARL4D10099.502ENSCSAG00000019024ARL4D10099.502Chlorocebus_sabaeus
ENSG00000175906ARL4D6697.744ENSCHOG00000007836ARL4D10097.744Choloepus_hoffmanni
ENSG00000175906ARL4D10082.090ENSCPBG00000016255ARL4D10082.090Chrysemys_picta_bellii
ENSG00000175906ARL4D10099.502ENSCANG00000022595ARL4D10099.502Colobus_angolensis_palliatus
ENSG00000175906ARL4D10095.522ENSCGRG00001011460Arl4d10095.522Cricetulus_griseus_chok1gshd
ENSG00000175906ARL4D10095.522ENSCGRG00000019127-10095.522Cricetulus_griseus_crigri
ENSG00000175906ARL4D10095.522ENSCGRG00000000260-10095.522Cricetulus_griseus_crigri
ENSG00000175906ARL4D10073.892ENSCSEG00000012307-10073.892Cynoglossus_semilaevis
ENSG00000175906ARL4D10075.622ENSDARG00000045074arl4d10075.622Danio_rerio
ENSG00000175906ARL4D10096.517ENSDNOG00000018767ARL4D10096.517Dasypus_novemcinctus
ENSG00000175906ARL4D10096.517ENSDORG00000023792Arl4d10096.517Dipodomys_ordii
ENSG00000175906ARL4D9797.949ENSECAG00000001021ARL4D8997.949Equus_caballus
ENSG00000175906ARL4D10094.527ENSEEUG00000007390ARL4D10094.527Erinaceus_europaeus
ENSG00000175906ARL4D10098.010ENSFCAG00000009907-10098.010Felis_catus
ENSG00000175906ARL4D10090.050ENSFCAG00000045027-10090.050Felis_catus
ENSG00000175906ARL4D10074.384ENSGMOG00000002137ARL4D9974.384Gadus_morhua
ENSG00000175906ARL4D10074.129ENSGAFG00000012473arl4d9974.129Gambusia_affinis
ENSG00000175906ARL4D10069.154ENSGACG00000000500-10069.154Gasterosteus_aculeatus
ENSG00000175906ARL4D10075.622ENSGACG00000003710arl4d9975.622Gasterosteus_aculeatus
ENSG00000175906ARL4D10081.095ENSGAGG00000024318ARL4D10081.095Gopherus_agassizii
ENSG00000175906ARL4D100100.000ENSGGOG00000042970ARL4D100100.000Gorilla_gorilla
ENSG00000175906ARL4D9970.297ENSHBUG00000013721-9970.297Haplochromis_burtoni
ENSG00000175906ARL4D10072.139ENSHBUG00000005802arl4d9972.139Haplochromis_burtoni
ENSG00000175906ARL4D10073.134ENSHCOG00000011881arl4d9973.134Hippocampus_comes
ENSG00000175906ARL4D10072.414ENSHCOG00000008536-10072.414Hippocampus_comes
ENSG00000175906ARL4D10075.124ENSIPUG00000019342Arl4d10075.124Ictalurus_punctatus
ENSG00000175906ARL4D10096.517ENSSTOG00000000518ARL4D10096.517Ictidomys_tridecemlineatus
ENSG00000175906ARL4D10095.522ENSJJAG00000004698Arl4d10095.522Jaculus_jaculus
ENSG00000175906ARL4D9176.374ENSLBEG00000011152arl4d9176.374Labrus_bergylta
ENSG00000175906ARL4D10076.617ENSLACG00000003905ARL4D10076.617Latimeria_chalumnae
ENSG00000175906ARL4D10076.617ENSLOCG00000017515arl4d10076.617Lepisosteus_oculatus
ENSG00000175906ARL4D10094.527ENSLAFG00000002606ARL4D10094.527Loxodonta_africana
ENSG00000175906ARL4D100100.000ENSMFAG00000029966ARL4D100100.000Macaca_fascicularis
ENSG00000175906ARL4D100100.000ENSMMUG00000021324ARL4D100100.000Macaca_mulatta
ENSG00000175906ARL4D100100.000ENSMNEG00000001796ARL4D100100.000Macaca_nemestrina
ENSG00000175906ARL4D10099.502ENSMLEG00000026779ARL4D10099.502Mandrillus_leucophaeus
ENSG00000175906ARL4D10072.637ENSMZEG00005007392arl4d9972.637Maylandia_zebra
ENSG00000175906ARL4D9970.792ENSMZEG00005008617-9970.792Maylandia_zebra
ENSG00000175906ARL4D10095.025ENSMAUG00000017839Arl4d10095.025Mesocricetus_auratus
ENSG00000175906ARL4D10097.512ENSMICG00000046097ARL4D10097.512Microcebus_murinus
ENSG00000175906ARL4D10096.020ENSMOCG00000002133Arl4d10096.020Microtus_ochrogaster
ENSG00000175906ARL4D10074.877ENSMMOG00000004941-10074.877Mola_mola
ENSG00000175906ARL4D10090.050ENSMODG00000024202ARL4D9990.050Monodelphis_domestica
ENSG00000175906ARL4D10070.936ENSMALG00000010932-10070.936Monopterus_albus
ENSG00000175906ARL4D10095.025MGP_CAROLIEiJ_G0017227Arl4d10095.025Mus_caroli
ENSG00000175906ARL4D10095.025ENSMUSG00000034936Arl4d10095.025Mus_musculus
ENSG00000175906ARL4D10095.025MGP_PahariEiJ_G0018357Arl4d10095.025Mus_pahari
ENSG00000175906ARL4D10095.025MGP_SPRETEiJ_G0018070Arl4d10095.025Mus_spretus
ENSG00000175906ARL4D10098.010ENSMPUG00000019051ARL4D10098.010Mustela_putorius_furo
ENSG00000175906ARL4D10095.025ENSMLUG00000014197ARL4D10095.025Myotis_lucifugus
ENSG00000175906ARL4D10095.025ENSNGAG00000022765Arl4d10095.025Nannospalax_galili
ENSG00000175906ARL4D100100.000ENSNLEG00000032904ARL4D100100.000Nomascus_leucogenys
ENSG00000175906ARL4D10095.025ENSOPRG00000014853ARL4D10095.025Ochotona_princeps
ENSG00000175906ARL4D10087.065ENSODEG00000020552ARL4D10087.065Octodon_degus
ENSG00000175906ARL4D10071.921ENSONIG00000003403ARL4D10071.921Oreochromis_niloticus
ENSG00000175906ARL4D10072.139ENSONIG00000021238arl4d9972.139Oreochromis_niloticus
ENSG00000175906ARL4D10096.020ENSOCUG00000004788ARL4D10096.020Oryctolagus_cuniculus
ENSG00000175906ARL4D10072.549ENSOMEG00000004308arl4d10072.549Oryzias_melastigma
ENSG00000175906ARL4D10096.517ENSOGAG00000029839ARL4D10096.517Otolemur_garnettii
ENSG00000175906ARL4D10097.015ENSOARG00000000118ARL4D10097.015Ovis_aries
ENSG00000175906ARL4D100100.000ENSPPAG00000026240ARL4D100100.000Pan_paniscus
ENSG00000175906ARL4D10097.512ENSPPRG00000015764ARL4D10097.512Panthera_pardus
ENSG00000175906ARL4D10097.512ENSPTIG00000010084ARL4D10097.512Panthera_tigris_altaica
ENSG00000175906ARL4D100100.000ENSPTRG00000048688ARL4D100100.000Pan_troglodytes
ENSG00000175906ARL4D10099.502ENSPANG00000015603ARL4D10099.502Papio_anubis
ENSG00000175906ARL4D10075.124ENSPKIG00000001594arl4d10075.124Paramormyrops_kingsleyae
ENSG00000175906ARL4D10080.597ENSPSIG00000000594ARL4D10080.597Pelodiscus_sinensis
ENSG00000175906ARL4D10071.642ENSPMGG00000019123arl4d9971.642Periophthalmus_magnuspinnatus
ENSG00000175906ARL4D8260.241ENSPMGG00000008718-7459.538Periophthalmus_magnuspinnatus
ENSG00000175906ARL4D10090.547ENSPCIG00000030256ARL4D9990.547Phascolarctos_cinereus
ENSG00000175906ARL4D10074.129ENSPFOG00000020447arl4d9974.129Poecilia_formosa
ENSG00000175906ARL4D10074.129ENSPLAG00000019168arl4d9974.129Poecilia_latipinna
ENSG00000175906ARL4D10074.129ENSPMEG00000021972arl4d9974.129Poecilia_mexicana
ENSG00000175906ARL4D10074.627ENSPREG00000011615arl4d9974.627Poecilia_reticulata
ENSG00000175906ARL4D100100.000ENSPPYG00000008358ARL4D100100.000Pongo_abelii
ENSG00000175906ARL4D10095.050ENSPCAG00000011261ARL4D10095.050Procavia_capensis
ENSG00000175906ARL4D10097.512ENSPCOG00000006201ARL4D10097.512Propithecus_coquereli
ENSG00000175906ARL4D10072.637ENSPNYG00000001516arl4d9972.637Pundamilia_nyererei
ENSG00000175906ARL4D9970.297ENSPNYG00000002408-9970.297Pundamilia_nyererei
ENSG00000175906ARL4D9777.949ENSPNAG00000007188ARL4D9377.949Pygocentrus_nattereri
ENSG00000175906ARL4D10095.025ENSRNOG00000020770Arl4d10095.025Rattus_norvegicus
ENSG00000175906ARL4D100100.000ENSRBIG00000029603ARL4D100100.000Rhinopithecus_bieti
ENSG00000175906ARL4D100100.000ENSRROG00000012052ARL4D100100.000Rhinopithecus_roxellana
ENSG00000175906ARL4D10099.005ENSSBOG00000016320ARL4D10099.005Saimiri_boliviensis_boliviensis
ENSG00000175906ARL4D9976.000ENSSMAG00000008394arl4d9976.000Scophthalmus_maximus
ENSG00000175906ARL4D10074.384ENSSMAG00000014218-10074.384Scophthalmus_maximus
ENSG00000175906ARL4D10073.399ENSSDUG00000017586-10073.399Seriola_dumerili
ENSG00000175906ARL4D10072.637ENSSDUG00000010935arl4d9972.637Seriola_dumerili
ENSG00000175906ARL4D10073.399ENSSLDG00000008208-10073.399Seriola_lalandi_dorsalis
ENSG00000175906ARL4D10072.637ENSSLDG00000005628arl4d9972.637Seriola_lalandi_dorsalis
ENSG00000175906ARL4D10098.010ENSSSCG00000017380ARL4D10098.010Sus_scrofa
ENSG00000175906ARL4D10072.906ENSTRUG00000024375-10072.906Takifugu_rubripes
ENSG00000175906ARL4D10095.522ENSTTRG00000009280ARL4D10095.522Tursiops_truncatus
ENSG00000175906ARL4D10098.010ENSUAMG00000017970ARL4D10098.010Ursus_americanus
ENSG00000175906ARL4D10098.010ENSUMAG00000012795ARL4D10098.010Ursus_maritimus
ENSG00000175906ARL4D10099.005ENSVVUG00000017396ARL4D10099.005Vulpes_vulpes
ENSG00000175906ARL4D10074.129ENSXCOG00000003892arl4d9974.129Xiphophorus_couchianus
ENSG00000175906ARL4D10074.129ENSXMAG00000019874arl4d9974.129Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003924GTPase activity7590735.TASFunction
GO:0005515protein binding17398095.25416956.IPIFunction
GO:0005525GTP binding21873635.IBAFunction
GO:0005730nucleolus-IEAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm17398095.IDAComponent
GO:0005886plasma membrane21873635.IBAComponent
GO:0005886plasma membrane17398095.IDAComponent
GO:0006886intracellular protein transport21873635.IBAProcess
GO:0009306protein secretion7590735.TASProcess
GO:0016192vesicle-mediated transport21873635.IBAProcess
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