EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchrX78657143SilentnovelI426I0.61
BLCAchrX78657364Missense_MutationNAD353N0.88
BLCAchrX78657178Missense_Mutationrs772136299P415S0.06
BLCAchrX78657063Missense_MutationnovelH453L0.46zf-CCHC
BLCAchrX78658357Missense_MutationnovelQ22E0.26
BLCAchrX78657192Missense_MutationNAD410V0.86
BRCAchrX78658073Silentrs139493021A116A0.26
BRCAchrX78657141Missense_MutationNAN427I0.11
BRCAchrX78658386Missense_MutationNAL12R0.48
BRCAchrX78657472Missense_MutationnovelD317N0.06
BRCAchrX78657677SilentNAS248S0.16
BRCAchrX78657771Missense_MutationNAE217V0.33
BRCAchrX786568183'UTRnovel0.32
CESCchrX78657593SilentNAV276V0.17
CESCchrX786568243'UTRnovel0.45
CESCchrX786566663'UTRnovel0.47
CESCchrX78658187Missense_MutationnovelK78N0.36
CESCchrX78658313Missense_MutationnovelQ36H0.31
CESCchrX78657440SilentNAQ327Q0.25
CHOLchrX78657272SilentnovelS383S0.47
COADchrX78658167Missense_MutationNAP85H0.21
COADchrX78658065Missense_MutationNAA119E0.59
COADchrX78657152SilentnovelQ423Q0.66
COADchrX786586325'UTRnovel0.44
COADchrX78657654Missense_MutationNAV256G0.06
COADchrX786585315'UTRnovel0.55
COADchrX78657159Missense_MutationnovelP421L0.79
COADchrX78658073Silentrs139493021A116A0.6
COADchrX786569343'UTRnovel0.1
COADchrX78657438Missense_MutationNAC328Y0.26
COADchrX78658189Missense_MutationnovelK78Q0.4
COADchrX78658296Missense_MutationNAK42M0.34
COADchrX78657128SilentNAI431I0.24
COADchrX78657631Missense_MutationNAV264I0.24
COADchrX78657211Frame_Shift_DelNAS404Vfs*1010.26
COADchrX78658206Missense_MutationNAA72E0.38
COADchrX786585955'UTRnovel0.22
COADchrX78658223Missense_MutationNAE66D0.41
COADchrX786585585'UTRnovel0.45
DLBCchrX78657713SilentNAF236F0.36
ESCAchrX78657654Missense_MutationNAV256G0.5
ESCAchrX78657213Missense_MutationnovelK403T0.56
ESCAchrX78657430Missense_MutationnovelQ331K0.77
ESCAchrX78657927Missense_MutationnovelE165V0.58
ESCAchrX786562933'UTRnovel0.55
ESCAchrX78657425SilentnovelL332L0.31
ESCAchrX78657698SilentnovelT241T0.81
ESCAchrX786568363'UTRnovel0.78
GBMchrX78657878Missense_MutationnovelE181D0.37
GBMchrX78657108Missense_Mutationrs369311059R438H0.36
GBMchrX78657531Missense_MutationNAI297T0.85
GBMchrX78657182Missense_MutationnovelE413D0.25
GBMchrX78658059Missense_Mutationrs760524568R121Q0.3
HNSCchrX78658385SilentnovelL12L0.1
HNSCchrX78657064Missense_MutationnovelH453N0.29zf-CCHC
HNSCchrX78657207Missense_MutationnovelS405F0.47
HNSCchrX78658411Missense_MutationnovelD4H0.48
HNSCchrX78657760Missense_MutationnovelA221S0.16
HNSCchrX78657365Missense_MutationnovelW352C0.3
HNSCchrX78658102Missense_MutationnovelE107K0.4
HNSCchrX78658248Missense_Mutationrs745795742A58D0.77
KICHchrX78658074Missense_Mutationrs144237768A116V0.08
KIRCchrX78657554Missense_MutationNAW289C0.23
KIRPchrX78657862Missense_MutationNAP187S0.37
KIRPchrX78657827SilentnovelQ198Q0.07
LGGchrX78657698SilentNAT241T0.21
LGGchrX78658073Silentrs139493021A116A0.26
LGGchrX78657427Missense_MutationNAL332I0.32
LGGchrX78658084Nonsense_MutationnovelE113*0.2
LGGchrX78657862Missense_MutationNAP187S0.15
LIHCchrX78657693Missense_MutationNAT243N0.92
LUADchrX78657228Missense_MutationNAP398H0.5
LUADchrX78657481Missense_MutationNAD314H0.15
LUADchrX78657828Missense_MutationnovelQ198R0.41
LUADchrX78657196Nonsense_MutationNAG409*0.12
LUADchrX78657652Missense_MutationNAQ257K0.37
LUADchrX78658096Missense_MutationNAP109T0.48
LUADchrX78657318Missense_MutationNAS368Y0.53
LUADchrX78657418Missense_MutationNAG335W0.75
LUADchrX78658238SilentNAP61P0.23
LUADchrX78657062Missense_MutationNAH453Q0.74zf-CCHC
LUADchrX78657172Missense_MutationNAA417S0.52
LUADchrX78657131Missense_MutationNAH430Q0.22
LUADchrX78658057Nonsense_MutationNAE122*0.47
LUADchrX78658379Missense_MutationnovelL14F0.47
LUADchrX78658403SilentnovelA6A0.23
LUADchrX78657186Missense_MutationNAP412H0.08
LUADchrX78657069Missense_MutationnovelP451H0.24zf-CCHC
LUADchrX78657070Missense_MutationnovelP451T0.24zf-CCHC
LUADchrX78657254Nonsense_MutationnovelC389*0.29
LUADchrX78658229Silentrs768510923L64L0.3
LUADchrX78657025Frame_Shift_DelnovelL466Cfs*390.21
LUADchrX78657277Silentrs200904872L382L0.09
LUADchrX78658095Missense_MutationNAP109L0.13
LUADchrX78658165Missense_MutationnovelQ86E0.64
LUADchrX78658418Translation_Start_SitenovelM1?1
LUADchrX78657164Missense_MutationNAN419K0.37
LUADchrX78658102Nonsense_MutationnovelE107*0.44
LUADchrX78657246Missense_MutationNAL392P0.22
LUADchrX78657641SilentNAS260S0.21
LUADchrX78658096Missense_MutationNAP109T0.19
LUADchrX78657485SilentNAL312L0.15
LUADchrX78657315Missense_MutationNAI369T0.41
LUADchrX78658401Missense_MutationNAA7D0.64
LUADchrX78657430Nonsense_MutationNAQ331*0.82
LUSCchrX78658257Missense_MutationNAS55Y0.58
LUSCchrX78657943Missense_MutationnovelD160Y0.66
LUSCchrX78657944Missense_Mutationrs747360888Q159H0.67
LUSCchrX78658052SilentnovelS123S0.1
LUSCchrX78657739Missense_MutationnovelP228T0.62
LUSCchrX78657547Missense_MutationnovelQ292K0.46
LUSCchrX78657652Missense_MutationnovelQ257E0.67
LUSCchrX78657469Missense_MutationnovelN318Y0.66
LUSCchrX78657424Missense_MutationNAC333G0.12
LUSCchrX78657185SilentnovelP412P0.31
LUSCchrX78657043Missense_MutationnovelV460F0.7
LUSCchrX78657740SilentnovelA227A0.27
LUSCchrX78657883Missense_MutationnovelL180I0.35
LUSCchrX78657026SilentnovelA465A0.15
LUSCchrX78657960Missense_MutationnovelK154M0.83
LUSCchrX78657331Missense_MutationNAG364C0.75
LUSCchrX78657093Frame_Shift_DelnovelR443Pfs*620.26
LUSCchrX78657850Missense_Mutationrs769439902P191T0.18
LUSCchrX78657913Missense_MutationnovelA170S0.68
LUSCchrX78657844Missense_MutationnovelE193Q0.6
LUSCchrX78658291Nonsense_MutationnovelQ44*0.2
LUSCchrX78657067Missense_MutationnovelG452R0.09zf-CCHC
OVchrX78657642Missense_MutationNAS260T0.34
PAADchrX78658319Missense_MutationnovelQ34H0.04
PAADchrX78657763Missense_Mutationrs757316241A220T0.18
PRADchrX78658074Missense_Mutationrs144237768A116V0.1
PRADchrX78657108Missense_Mutationrs369311059R438H0.24
PRADchrX78657433Missense_MutationnovelH330N0.57
PRADchrX78657793Missense_MutationnovelL210M0.67
READchrX78657411Missense_MutationnovelG337V0.74
READchrX78657716Missense_MutationNAD235E0.17
READchrX786569643'UTRnovel0.94
SARCchrX78657821SilentnovelF200F0.39
SKCMchrX78657015Missense_MutationnovelG469E1
SKCMchrX78657713SilentNAF236F0.6
SKCMchrX786584365'UTRnovel0.4
SKCMchrX78657497SilentNAF308F0.36
SKCMchrX78657859Missense_MutationNAP188S0.65
SKCMchrX78657401SilentnovelA340A0.93
SKCMchrX78657196Missense_MutationNAG409R0.67
SKCMchrX78657197SilentnovelE408E0.66
SKCMchrX78657859Missense_MutationNAP188S0.57
SKCMchrX78657829Nonsense_MutationnovelQ198*0.5
SKCMchrX78657830SilentnovelA197A0.5
SKCMchrX78657108Missense_Mutationrs369311059R438H0.87
SKCMchrX78657826Missense_MutationNAE199K0.55
SKCMchrX78658225Missense_Mutationrs754233721E66K0.16
SKCMchrX78657344SilentnovelI359I0.76
SKCMchrX78657821SilentnovelF200F0.64
SKCMchrX78657713SilentNAF236F0.96
SKCMchrX78657943Missense_Mutationrs754780962D160N0.76
SKCMchrX78657613Missense_MutationnovelP270A0.21
SKCMchrX78657748Missense_MutationNAP225S0.33
SKCMchrX78658366Missense_MutationNAR19W0.87
SKCMchrX78657027Missense_MutationNAA465V0.94
SKCMchrX78657943Missense_Mutationrs754780962D160N0.21
SKCMchrX78658204Missense_MutationNAA73T0.33
SKCMchrX78658034SilentNAA129A0.33
SKCMchrX78658366Missense_MutationNAR19W0.13
SKCMchrX78657943Missense_Mutationrs754780962D160N0.36
SKCMchrX78657368SilentNAN351N0.34
SKCMchrX78658213Missense_MutationNAP70S0.33
SKCMchrX78657110SilentNAV437V0.95
SKCMchrX78657223Missense_Mutationrs376343340P400S0.11
SKCMchrX78657169Missense_MutationNAE418K0.32
SKCMchrX78658244SilentNAK59K0.34
SKCMchrX78657940Missense_MutationNAP161S0.97
SKCMchrX78658187SilentNAK78K0.26
SKCMchrX78658145Silentrs747741103Q92Q0.45
SKCMchrX78657497SilentNAF308F0.62
SKCMchrX78658322SilentNAL33L0.88
SKCMchrX78657954Missense_MutationNAS156L0.94
SKCMchrX78658366Missense_MutationNAR19W0.6
SKCMchrX78658144Missense_MutationNAD93N1
SKCMchrX78658145Silentrs747741103Q92Q1
SKCMchrX78658144Missense_MutationNAD93N0.79
SKCMchrX78657497SilentNAF308F0.23
STADchrX78657968SilentNAQ151Q0.38
STADchrX78658164Missense_MutationnovelQ86R0.41
STADchrX78658205SilentnovelA72A0.6
STADchrX78658142Missense_MutationnovelD93E0.33
STADchrX78658296Missense_MutationNAK42T0.7
STADchrX78657108Missense_Mutationrs369311059R438H0.73
STADchrX786569833'UTRnovel0.38
STADchrX78657096Missense_MutationNAG442D0.13
STADchrX78657962SilentnovelP153P0.14
STADchrX78657654Missense_MutationNAV256G0.67
STADchrX78657955Missense_MutationNAS156A0.88
STADchrX78657181Missense_MutationNAS414C0.1
STADchrX78657937Missense_MutationnovelP162S0.3
THYMchrX786565903'UTRnovel0.29
UCECchrX78657109Missense_Mutationrs150531562R438C0.25
UCECchrX78658048Missense_MutationNAK125E0.28
UCECchrX78658141Missense_MutationNAL94I0.23
UCECchrX786568833'UTRnovel0.52
UCECchrX78657985Missense_Mutationrs753698674D146N0.34
UCECchrX78657554Nonsense_MutationNAW289*0.12
UCECchrX78658163Missense_MutationNAQ86H0.29
UCECchrX786584595'UTRnovel0.35
UCECchrX78657525Missense_MutationNAS299I0.45
UCECchrX78657392SilentnovelF343F0.29
UCECchrX78657805Missense_MutationnovelA206T0.37
UCECchrX78657451Missense_MutationnovelD324Y0.43
UCECchrX78657752Missense_MutationnovelE223D0.06
UCECchrX78657476SilentnovelT315T0.53
UCECchrX78657388Frame_Shift_InsnovelL345Sfs*180.06
UCECchrX78658145Missense_MutationNAQ92H0.3
UCECchrX786584365'UTRnovel0.2
UCECchrX78657311Silentrs771959800Q370Q0.48
UCECchrX78657748Missense_MutationNAP225S0.26
UCECchrX78657436Missense_Mutationrs376204247I329V0.19
UCECchrX78658238SilentnovelP61P0.31
UCECchrX786586075'UTRnovel0.24
UCECchrX78657682Missense_MutationNAD247N0.59
UCECchrX786565273'UTRnovel0.35
UCECchrX78657778Missense_MutationnovelV215I0.5
UCECchrX78657617SilentnovelL268L0.33
UCECchrX786567363'UTRnovel0.36
UCECchrX78657905Missense_MutationnovelE172D0.17
UCECchrX78658032Missense_MutationnovelH130R0.36
UCECchrX786564633'UTRnovel0.54
UCECchrX786564673'UTRNA0.26
UCECchrX786562423'UTRnovel0.21
UCECchrX786565803'UTRnovel0.44
UCECchrX78657878Missense_MutationnovelE181D0.4
UCECchrX78657485SilentNAL312L0.41
UCECchrX786567653'UTRnovel0.23
UCECchrX78658071Missense_MutationNAP117H0.45
UCECchrX78657735Missense_MutationnovelI229N0.08
UCECchrX78657708Frame_Shift_Insrs772223607L238Pfs*160.37
UCECchrX786569593'UTRrs7496738610.45
UCECchrX786568833'UTRnovel0.14
UCECchrX78658079SilentnovelS114S0.18
UCECchrX78657492Missense_MutationnovelP310H0.37
UCECchrX78658036Missense_MutationnovelA129T0.46
UCECchrX78657471Missense_MutationnovelD317G0.27
UCECchrX78657631Missense_MutationnovelV264F0.44
UCECchrX78658241Missense_MutationnovelE60D0.18
UCECchrX78658376Missense_MutationnovelE15D0.12
UCECchrX786563523'UTRnovel0.41
UCECchrX786562743'UTRnovel0.65
UCECchrX786566223'UTRnovel0.35
UCECchrX78657023SilentnovelL466L0.38
UCECchrX78658313Missense_MutationnovelQ36H0.37
UCECchrX78657678Missense_MutationnovelS248F0.29
UCECchrX78657357Missense_MutationnovelS355I0.16
UCECchrX78658073Silentrs139493021A116A0.45
UCECchrX78658053Missense_MutationnovelS123F0.42
UCECchrX78658366Missense_MutationNAR19W0.12
UCECchrX786565713'UTRnovel0.1
UCECchrX786567653'UTRnovel0.29
UCECchrX78657328Missense_MutationNAL365F0.35
UCECchrX786584815'UTRnovel0.2
UCECchrX786584835'UTRnovel0.2
UCECchrX78658204Missense_MutationNAA73T0.46
UCECchrX78657903Nonsense_MutationnovelY173delins*0.09
UCECchrX786569223'UTRnovel0.15
UCECchrX78657667Missense_MutationNAP252S0.42
UCECchrX786562343'UTRnovel0.31
UCECchrX78657951Missense_MutationnovelE157A0.19
UCECchrX786568583'UTRnovel0.5
UCECchrX78657324Missense_MutationnovelA366V0.46
UCECchrX786586225'UTRnovel0.19
UCECchrX78657495Missense_MutationnovelI309K0.37
UCECchrX78657607Missense_MutationnovelE272K0.42
UCECchrX786569053'UTRnovel0.1
UCECchrX78657031Nonsense_MutationnovelQ464*0.45

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
THCADEL00.21991

Survival Analysis
CancerP-value Q-value
KIRC0.04

Kaplan-Meier Survival Analysis

STAD0.041

Kaplan-Meier Survival Analysis

MESO0.0018

Kaplan-Meier Survival Analysis

LUSC0.0014

Kaplan-Meier Survival Analysis

ESCA0.048

Kaplan-Meier Survival Analysis

PAAD0.034

Kaplan-Meier Survival Analysis

CHOL0.04

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000179300 (Gene tree)
Gene ID
203430
Gene Symbol
RTL3
Alias
FLJ38865|Mar3|Mart3|ZHC5|SIRH9|ZCCHC5
Full Name
retrotransposon Gag like 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
3,434 bases
Position
chrX:78,656,069-78,659,502
Accession
22997
RBP type
canonical RBP
Summary
This gene is a member of a family of gag-related retrotransposon genes. These genes appear to have lost the ability to retrotranspose; however, their open reading frames have remained intact, which may indicate that these genes have acquired new functions in the cell. [provided by RefSeq, Nov 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000316794zf-CCHCPF00098.230.000111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000321110RTL3-2012648-ENSP00000316794475 (aa)-Q8N8U3
Gene Model
Click here to download ENSG00000179300's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG000001793003-hydroxy-1-methylpropylmercapturic acid2E-726053186
ENSG00000179300Smoking2E-726053186
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000179300's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000179300RTL39964.854ENSTSYG00000008776RTL39964.644Carlito_syrichta
ENSG00000179300RTL39952.338ENSCGRG00001015952Rtl39952.536Cricetulus_griseus_chok1gshd
ENSG00000179300RTL39961.508ENSDORG00000029995Rtl39960.913Dipodomys_ordii
ENSG00000179300RTL39965.669ENSECAG00000029496RTL39965.269Equus_caballus
ENSG00000179300RTL39959.363ENSSTOG00000027152RTL39955.121Ictidomys_tridecemlineatus
ENSG00000179300RTL39955.340ENSJJAG00000014790-9955.146Jaculus_jaculus
ENSG00000179300RTL39952.698ENSMAUG00000011823Rtl39952.899Mesocricetus_auratus
ENSG00000179300RTL39968.852ENSMICG00000004901RTL39968.443Microcebus_murinus
ENSG00000179300RTL39951.193ENSMOCG00000017247Rtl39951.013Microtus_ochrogaster
ENSG00000179300RTL39950.811MGP_CAROLIEiJ_G0033333Rtl39947.133Mus_caroli
ENSG00000179300RTL39951.515ENSMUSG00000047686Rtl39946.881Mus_musculus
ENSG00000179300RTL39950.709MGP_PahariEiJ_G0031869Rtl37953.659Mus_pahari
ENSG00000179300RTL39951.872MGP_SPRETEiJ_G0034497Rtl39947.594Mus_spretus
ENSG00000179300RTL39947.972ENSNGAG00000002851Rtl39947.795Nannospalax_galili
ENSG00000179300RTL39960.250ENSOCUG00000025689RTL39959.358Oryctolagus_cuniculus
ENSG00000179300RTL39972.860ENSPCOG00000016711RTL39972.860Propithecus_coquereli
ENSG00000179300RTL39950.089ENSRNOG00000002429Rtl39945.745Rattus_norvegicus
ENSG00000179300RTL310064.523ENSTBEG00000002464RTL310064.523Tupaia_belangeri
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0005634nucleus-IEAComponent
GO:0008270zinc ion binding-IEAFunction
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us