EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
29045831USP7 Is a Tumor-Specific WNT Activator for APC-Mutated Colorectal Cancer by Mediating β-Catenin Deubiquitination.Cell Rep2017 Oct 17Novellasdemunt Ldoi: 10.1016/j.celrep.2017.09.072.
18418047A role of HAUSP in tumor suppression in a human colon carcinoma xenograft model.Cell Cycle2008 May 1Becker K-
29574466Clinical Significance of Ubiquitin Specific Protease 7 (USP7) in Predicting Prognosis of Hepatocellular Carcinoma and its Functional Mechanisms.Med Sci Monit2018 Mar 25Wang X-
30542736Ubiquitinspecific protease 7 promotes osteosarcoma cell metastasis by inducing epithelialmesenchymal transition.Oncol Rep2019 JanZeng Qdoi: 10.3892/or.2018.6835
22901115No association between the USP7 gene polymorphisms and colorectal cancer in the Chinese Han population.Asian Pac J Cancer Prev2012Li X-
26768359Small-molecule inhibitors of USP7 induce apoptosis through oxidative and endoplasmic reticulum stress in cancer cells.Biochem Biophys Res Commun2016 Jan 29Lee Gdoi: 10.1016/j.bbrc.2016.01.021
24823443HAUSP, a novel deubiquitinase for Rb - MDM2 the critical regulator.FEBS J2014 JulBhattacharya Sdoi: 10.1111/febs.12843
20930542Ubiquitin becomes ubiquitous in cancer: emerging roles of ubiquitin ligases and deubiquitinases in tumorigenesis and as therapeutic targets.Cancer Biol Ther2010 Oct 15Shi D-
22750444STAT3 repressed USP7 expression is crucial for colon cancer development.FEBS Lett2012 Sep 21Yang Zdoi: 10.1016/j.febslet.2012.06.025
25695151FoxO6 inhibits cell proliferation in lung carcinoma through up-regulation of USP7.Mol Med Rep2015 JulHu HJdoi: 10.3892/mmr.2015.3362
20855462Single-nucleotide polymorphisms in p53 pathway and aggressiveness of prostate cancer in a Caucasian population.Clin Cancer Res2010 Nov 1Sun Tdoi: 10.1158/1078-0432.CCR-10-1261
18716620The deubiquitinylation and localization of PTEN are regulated by a HAUSP-PML network.Nature2008 Oct 9Song MSdoi: 10.1038/nature07290
27302477Expression of USP7 and MARCH7 Is Correlated with Poor Prognosis in Epithelial Ovarian Cancer.Tohoku J Exp Med2016 JulZhang Ldoi: 10.1620/tjem.239.165.
28406480WDR79 promotes the proliferation of non-small cell lung cancer cells via USP7-mediated regulation of the Mdm2-p53 pathway.Cell Death Dis2017 Apr 13Sun Ydoi: 10.1038/cddis.2017.162.
28288134DUB3 and USP7 de-ubiquitinating enzymes control replication inhibitor Geminin: molecular characterization and associations with breast cancer.Oncogene2017 Aug 17Hern??ndez-P??rez Sdoi: 10.1038/onc.2017.21
28325877Dual-utility NLS drives RNF169-dependent DNA damage responses.Proc Natl Acad Sci U S A2017 Apr 4An Ldoi: 10.1073/pnas.1616602114

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr168895692Missense_MutationnovelE957K0.32
BLCAchr168905188Splice_RegionnovelL524L0.08
BLCAchr168923247SilentnovelF117F0.14
BLCAchr168902461Nonsense_MutationNAR621*0.49
BLCAchr168920358Splice_SiteNAX204_splice0.39
BLCAchr168905254Missense_MutationnovelD502E0.11
BLCAchr168903325Missense_MutationNAF594L0.2
BLCAchr168894809Missense_MutationnovelD1029G0.11
BLCAchr168902184Missense_MutationnovelI649V0.34
BLCAchr168915287Missense_MutationnovelD349N0.07
BLCAchr168915326Missense_MutationNAE336K0.6
BLCAchr168905289Missense_MutationnovelE491K0.57
BLCAchr168920411Missense_MutationnovelD187N0.29
BLCAchr168915299Missense_MutationnovelE345Q0.1
BLCAchr168915522Missense_MutationnovelL304V0.08
BLCAchr168897033Missense_Mutationrs368894909V929M0.11
BRCAchr168899750Missense_MutationNAP773S0.05
BRCAchr168920414Missense_MutationnovelD186N0.12
BRCAchr168895059Missense_MutationNAG1004E0.42
BRCAchr168895129Missense_MutationNAD981H0.26
BRCAchr168923224Missense_MutationnovelS125F0.09
BRCAchr168897030Missense_MutationnovelE930Q0.08
BRCAchr168920372Missense_MutationnovelP200A0.16
BRCAchr168903355Silentrs374321309Y584Y0.31
BRCAchr168894614SilentnovelG1046G0.09
BRCAchr168908389Missense_MutationNAR408K0.15
BRCAchr168915519Missense_MutationNAD305N0.14
BRCAchr168894592Missense_MutationnovelD1054H0.06
CESCchr168923243Missense_MutationnovelL119V0.28
CESCchr168904491Missense_MutationnovelI550V0.3
CESCchr168899655Frame_Shift_InsnovelN805*0.12
CESCchr168915337Missense_MutationnovelI332T0.49
CESCchr168908438Missense_MutationNAG392S0.15
CESCchr168899714Missense_MutationNAE785K0.38
CESCchr168930356Missense_MutationNAV41L0.33
COADchr168930383Missense_MutationnovelD32H0.08
COADchr168895091Silentrs757705172A993A0.41
COADchr168903355Silentrs374321309Y584Y0.21
COADchr168904542Missense_Mutationrs374207468D533N0.3
COADchr168895649Missense_MutationnovelR971Q0.36
COADchr168923294Missense_MutationnovelM102L0.22
COADchr168899620Missense_MutationnovelR816I0.24
COADchr168910765Missense_MutationNAA381T0.29
COADchr168895060Missense_MutationnovelG1004R0.06
COADchr168916502Splice_RegionNAV302V0.31
COADchr168902182Silentrs113373249I649I0.08
COADchr168894038Missense_MutationnovelR1090H0.23
COADchr168920359Missense_MutationNAA204V0.36
COADchr168898628Missense_MutationNAG848V0.34
COADchr168899720Missense_MutationNAA783T0.31
COADchr168904506Nonsense_MutationnovelQ545*0.41
COADchr168895150Nonsense_MutationNAE974*0.18
COADchr168923320Missense_MutationNAR93Q0.45
COADchr168904545Missense_MutationnovelT532A0.14
COADchr168895714SilentnovelI949I0.13
COADchr168902461Nonsense_MutationNAR621*0.17
COADchr168906578Nonsense_MutationNAE426*0.13
COADchr168895096Missense_MutationnovelV992M0.34
COADchr168919069SilentnovelL228L0.34
COADchr168923321Nonsense_MutationNAR93*0.31
COADchr168910767Missense_MutationNAD380G0.26
COADchr168906535Frame_Shift_InsnovelT440Nfs*40.17
ESCAchr168903349Missense_MutationnovelE586D0.34
ESCAchr168906535Frame_Shift_InsnovelT440Nfs*40.31
ESCAchr168895669Frame_Shift_InsnovelA965Cfs*230.18
GBMchr168898546Missense_MutationnovelK875N0.21
GBMchr168900620Missense_MutationnovelP740L0.17
GBMchr168905238Nonsense_MutationnovelR508*0.22
GBMchr168905313Missense_MutationnovelD483N0.13
GBMchr168923305Frame_Shift_InsnovelK98Rfs*270.08
GBMchr168921228Missense_MutationnovelS151C0.19
GBMchr168904550Missense_Mutationrs763719614A530V0.4
HNSCchr168915460Missense_MutationnovelF324L0.26
HNSCchr168895727Missense_MutationnovelV945A0.26
HNSCchr168905319Missense_MutationNAD481H0.23
HNSCchr168904494Missense_MutationnovelR549G0.08
HNSCchr168895734Missense_MutationNAE943Q0.4
HNSCchr168904475Missense_MutationnovelR555Q0.17
HNSCchr168897033Missense_MutationnovelV929L0.05
KIRCchr168902170Silentrs761788371D653D0.06
KIRCchr168917129Missense_MutationNAD250N0.25
KIRCchr1688938853'UTRnovel0.2
LGGchr168920387Missense_MutationnovelV195L0.4
LGGchr168895109SilentnovelE987E0.04
LGGchr168894843Nonsense_MutationnovelR1018*0.43
LGGchr168904513Missense_MutationnovelE542D0.53
LGGchr168910768Missense_MutationnovelD380N0.54
LGGchr168917043Frame_Shift_InsnovelL279Vfs*120.29
LGGchr168906567SilentNAE429E0.53
LGGchr168897030Missense_MutationnovelE930K0.05
LIHCchr168906542Nonsense_MutationNAQ438*0.54
LIHCchr168895645Missense_MutationnovelI972M0.27
LIHCchr168963274Missense_Mutationrs750093857Q4H0.22
LIHCchr168894850Missense_MutationNAE1015D0.37
LIHCchr168898592Missense_MutationnovelT860I0.48
LUADchr1688939753'UTRnovel0.1
LUADchr168915314Missense_MutationNAR340W0.3
LUADchr168894832Missense_MutationNAM1021I0.33
LUADchr168910799SilentnovelA369A0.17
LUADchr168903356Missense_MutationnovelY584C0.14
LUADchr168910761Missense_MutationnovelG382V0.22
LUADchr168902127Nonsense_MutationNAE668*0.1
LUADchr168923216Missense_MutationnovelT128A0.13
LUADchr168915456Missense_MutationNAG326C0.29
LUADchr168899684Missense_MutationNAD795N0.11
LUADchr168905237Missense_MutationNAR508L0.13
LUADchr168919117Missense_MutationNAG212C0.24
LUADchr168895115SilentNAE985E0.1
LUADchr168899165Missense_MutationNAR829S0.27
LUADchr168905250Missense_MutationNAD504Y0.08
LUADchr168899633Missense_MutationNAT812S0.33
LUADchr168905319Missense_MutationNAD481H0.16
LUSCchr168901193Missense_MutationNAR697W0.13
LUSCchr168903304SilentnovelS601S0.14
LUSCchr168919093Nonsense_MutationnovelG220*0.45
LUSCchr168899651Missense_MutationNAD806Y0.29
LUSCchr168899628Silentrs148541392L813L0.11
LUSCchr168904466Missense_MutationnovelR558L0.47
LUSCchr168915455Missense_MutationnovelG326V0.16
LUSCchr168895068Missense_MutationNAG1001E0.32
LUSCchr168917056Missense_MutationnovelV274A0.23
LUSCchr168919051Missense_MutationNAF234V0.06
LUSCchr168904461Missense_MutationnovelE560K0.29
LUSCchr168902391Missense_MutationNAG644A0.47
LUSCchr168897081Missense_MutationnovelD913N0.19
LUSCchr168898423SilentNAI885I0.18
MESOchr168904466Missense_MutationnovelR558Q0.25
OVchr168897017Missense_MutationNAK934I0.51
OVchr168897084Missense_MutationnovelP912A0.05
OVchr168898374Nonsense_MutationnovelQ902*0.03
OVchr168894588Missense_MutationNAE1055G0.54
OVchr168895082Silentrs754178330H996H0.57
OVchr168895734Missense_MutationNAE943Q0.3
OVchr168902449Missense_MutationnovelM625L0.13
OVchr168921221Missense_MutationNAR153P0.35
OVchr168920401Missense_MutationNAT190I0.3
OVchr168905259Missense_MutationNAH501Y0.66
PAADchr168899721Silentrs372148483T782T0.22
PAADchr168902082Missense_MutationNAH683Y0.05
PRADchr168895682Missense_MutationnovelE960A0.11
PRADchr168895069Missense_MutationnovelG1001R0.39
READchr1688939123'UTRnovel0.24
READchr168900548Missense_MutationnovelD764G0.17
READchr168894007Missense_MutationNAI1100M0.11
READchr168923287Missense_MutationNAR104H0.29
READchr168898564SilentNAK869K0.23
READchr168898357Splice_Regionnovel0.35
READchr168906516SilentNAA446A0.39
READchr168921195Nonsense_MutationNAE162*0.43
SARCchr168910769Silentrs35018235Y379Y0.78
SARCchr168894801Missense_MutationnovelE1032K0.14
SKCMchr168902146SilentNAF661F0.22
SKCMchr168902117Missense_MutationNAA671V0.27
SKCMchr168902421Missense_MutationNAR634Q0.52
SKCMchr168902082Missense_MutationNAH683Y0.61
SKCMchr168917137Missense_MutationnovelT247I0.5
SKCMchr168902421Missense_MutationNAR634Q0.44
SKCMchr168894078SilentNAL1077L0.22
SKCMchr168917122Missense_Mutationrs752857703S252L0.32
SKCMchr168906524Missense_MutationnovelD444Y0.4
SKCMchr168906525SilentnovelK443K0.4
SKCMchr168899688Silentrs749014851R793R0.55
SKCMchr168919121Silentrs753887425H210H0.42
SKCMchr168919122Missense_MutationnovelH210L0.42
SKCMchr168906529Missense_MutationnovelP442L0.26
SKCMchr168902178Missense_MutationNAL651F0.07
SKCMchr168902082Missense_MutationNAH683Y0.39
SKCMchr168906430Missense_MutationNAG475A0.45
SKCMchr168900620Missense_MutationnovelP740L0.16
SKCMchr168906442Missense_MutationNAP471L0.18
SKCMchr168901153Missense_MutationnovelS710F0.14
SKCMchr168904530Missense_MutationnovelP537S0.42
SKCMchr168915519Missense_MutationNAD305N0.39
SKCMchr168920396Missense_MutationNAE192K0.21
SKCMchr168894823SilentNAI1024I0.25
SKCMchr168923347Missense_MutationnovelS84L0.35
SKCMchr168895085SilentNAF995F0.38
SKCMchr168902422Nonsense_MutationNAR634*0.17
SKCMchr1688939943'UTRrs7472956410.28
SKCMchr1688939523'UTRrs5551947230.43
SKCMchr168915336SilentNAI332I0.29
SKCMchr168902461Nonsense_MutationNAR621*0.33
SKCMchr168900558Missense_MutationNAM761L0.1
STADchr168915257Missense_MutationNAN359Y0.15
STADchr168902396Silentrs140316737A642A0.26
STADchr168894095Missense_MutationNAS1071F0.15
STADchr168915270Missense_MutationNAI354M0.19
STADchr168923247Missense_MutationNAF117L0.15
STADchr168906535Frame_Shift_InsnovelT440Nfs*40.35
STADchr168923310Silentrs773674539P96P0.51
STADchr168894069Missense_MutationNAD1080N0.23
STADchr168895112SilentNAN986N0.35
STADchr168905251Silentrs776078669D503D0.37
STADchr168894588Missense_MutationNAE1055A0.43
STADchr168906551Nonsense_MutationNAE435*0.3
STADchr168902120Missense_MutationnovelA670D0.42
STADchr168910780Missense_MutationnovelD376N0.46
STADchr168895091Silentrs757705172A993A0.09
STADchr168906535Frame_Shift_DelnovelT440Kfs*300.26
STADchr168894004SilentNAH1101H0.09
STADchr168899649In_Frame_DelnovelD806del0.12
STADchr168901172Missense_MutationNAH704Y0.09
STADchr168900994Missense_MutationnovelY735C0.35
STADchr168894783Splice_SiteNAX1037_splice0.27
STADchr168920409SilentNAD187D0.27
STADchr168904476Missense_MutationNAR555W0.08
STADchr168902391Missense_MutationnovelG644D0.28
STADchr168900588Missense_MutationNAV751M0.3
UCECchr168900619Silentrs747684595P740P0.39
UCECchr168900619Silentrs747684595P740P0.21
UCECchr1688937073'UTRrs5435678470.35
UCECchr168894069Missense_MutationNAD1080N0.41
UCECchr168899705Nonsense_MutationNAR788*0.22
UCECchr168901031Missense_MutationnovelR723G0.12
UCECchr168919083Missense_MutationnovelC223Y0.12
UCECchr168921221Missense_MutationnovelR153H0.34
UCECchr168915473Missense_MutationnovelI320T0.05
UCECchr168902395Missense_Mutationrs761125187D643N0.05
UCECchr168904462Missense_MutationnovelQ559H0.4
UCECchr168903304Silentrs146507622S601S0.37
UCECchr168930312Silentrs188450052A55A0.49
UCECchr168930313Missense_Mutationrs560277695A55V0.4
UCECchr168895070Silentrs200702953F1000F0.29
UCECchr168903354Missense_MutationnovelD585N0.07
UCECchr168899631Silentrs765786478T812T0.25
UCECchr168921232Silentrs781494085S149S0.36
UCECchr1688939123'UTRnovel0.11
UCECchr168902395Missense_Mutationrs761125187D643N0.44
UCECchr168919035Missense_MutationNAR239Q0.19
UCECchr168923320Missense_MutationNAR93Q0.47
UCECchr168923320Missense_MutationNAR93Q0.47
UCECchr168936688Intronnovel0.5
UCECchr168923401Missense_MutationnovelR66H0.17
UCECchr168917093Frame_Shift_DelnovelR262Sfs*40.24
UCECchr168904512Nonsense_MutationnovelR543*0.41
UCECchr168915313Missense_MutationnovelR340Q0.29
UCECchr168923258Frame_Shift_DelnovelS114Afs*20.55
UCECchr168901013Missense_MutationnovelD729Y0.36
UCECchr168920430Missense_MutationnovelE180D0.43
UCECchr168895658Missense_MutationnovelR968Q0.42
UCECchr168894102Missense_MutationNAN1069D0.33
UCECchr168903304Silentrs146507622S601S0.21
UCECchr168915459Missense_Mutationrs765536244R325C0.37
UCECchr168923272Missense_MutationnovelR109K0.24
UCECchr168903321Missense_MutationnovelV596I0.46
UCECchr168894063Missense_MutationnovelF1082L0.51
UCECchr168921224Missense_MutationnovelR152P0.3
UCECchr168894594Missense_MutationnovelE1053G0.44
UCECchr1688937843'UTRnovel0.32
UCECchr168895123Missense_MutationnovelD983Y0.31
UCECchr168910769Silentrs35018235Y379Y0.46
UCECchr168898401Missense_MutationnovelS893R0.2
UCECchr168910790Missense_MutationnovelQ372H0.35
UCECchr168923346Silentrs376640584S84S0.26
UCECchr168930397Missense_Mutationrs370070575A27V0.23
UCECchr168895657SilentNAR968R0.27
UCECchr168899687Missense_MutationNAV794I0.38
UCECchr168923331Silentrs767149020P89P0.1
UCECchr168901194Silentrs376595760T696T0.11
UCECchr168902396Silentrs140316737A642A0.04
UCECchr168902438SilentnovelR628R0.38
UCECchr168902461Silentrs374224337R621R0.24
UCECchr168901013Missense_MutationnovelD729Y0.05
UCECchr168894038Missense_MutationnovelR1090H0.12
UCECchr168921232Silentrs781494085S149S0.3
UCECchr168920359Missense_MutationNAA204V0.19
UCECchr168923313Silentrs759100414L95L0.43
UCECchr168923400SilentnovelR66R0.48
UCSchr168905238In_Frame_DelnovelD504_R508delinsG0.56
UCSchr1688939283'UTRnovel0.39
UCSchr168895705SilentnovelV952V0.23

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCAAMP0.16186.162e-06
CHOLDEL0.11110.23475

Survival Analysis
CancerP-value Q-value
THYM0.0042

Kaplan-Meier Survival Analysis

KIRC0.0015

Kaplan-Meier Survival Analysis

SARC0.043

Kaplan-Meier Survival Analysis

COAD0.044

Kaplan-Meier Survival Analysis

READ0.00049

Kaplan-Meier Survival Analysis

UCEC0.00061

Kaplan-Meier Survival Analysis

LGG0.031

Kaplan-Meier Survival Analysis

Drugs

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Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000187555 (Gene tree)
Gene ID
7874
Gene Symbol
USP7
Alias
HAUSP
Full Name
ubiquitin specific peptidase 7
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
72,421 bases
Position
chr16:8,892,094-8,964,514
Accession
12630
RBP type
non-canonical RBP
Summary
The protein encoded by this gene belongs to the peptidase C19 family, which includes ubiquitinyl hydrolases. This protein deubiquitinates target proteins such as p53 (a tumor suppressor protein) and WASH (essential for endosomal protein recycling), and regulates their activities by counteracting the opposing ubiquitin ligase activity of proteins such as HDM2 and TRIM27, involved in the respective process. Mutations in this gene have been implicated in a neurodevelopmental disorder. [provided by RefSeq, Mar 2016]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
17927229Proteome changes induced by knock-down of the deubiquitylating enzyme HAUSP/USP7.J Proteome Res2007 NovKessler BM-
26074452Hypoxia induces miR-210, leading to anti-apoptosis in ovarian follicular cells of marine medaka Oryzias melastigma.Aquat Toxicol2015 AugTse ACdoi: 10.1016/j.aquatox.2015.06.002
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000566224USP7-214503--- (aa)--
ENST00000567113USP7-216448--- (aa)--
ENST00000565455USP7-2103554-ENSP0000045625847 (aa)-H3BRI4
ENST00000563043USP7-206332-ENSP0000045959468 (aa)-I3L2D8
ENST00000569448USP7-220698--- (aa)--
ENST00000569230USP7-219569-ENSP00000457237117 (aa)-H3BTM1
ENST00000542333USP7-2031966-ENSP00000439272509 (aa)-F5H2X1
ENST00000566004USP7-212559-ENSP00000456150130 (aa)-H3BRA2
ENST00000570256USP7-221591--- (aa)--
ENST00000564117USP7-209479-ENSP00000457815109 (aa)-H3BUV0
ENST00000565883USP7-211453--- (aa)--
ENST00000562051USP7-204567--- (aa)--
ENST00000567329USP7-217567--- (aa)--
ENST00000344836USP7-2015412XM_017023652ENSP000003435351102 (aa)XP_016879141Q93009
ENST00000563085USP7-2073194-ENSP00000454795909 (aa)-H3BND8
ENST00000566131USP7-213569--- (aa)--
ENST00000566273USP7-215577-ENSP00000455719159 (aa)-H3BQD1
ENST00000567692USP7-218313-ENSP0000045802717 (aa)-H3BVA7
ENST00000381886USP7-2023587XM_017023653ENSP000003713101086 (aa)XP_016879142Q93009
ENST00000562615USP7-205304--- (aa)--
ENST00000563961USP7-2084533-ENSP0000045436291 (aa)-H3BMF6
Gene Model
Click here to download ENSG00000187555's gene model file
Pathways
Pathway IDPathway NameSource
hsa04068FoxO signaling pathwayKEGG
hsa05169Epstein-Barr virus infectionKEGG
hsa05203Viral carcinogenesisKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000187555Heart Failure9.6622427E-004-
ENSG00000187555Hypertrophy, Left Ventricular1.5140000E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000187555rs183725168954178CPlatelet count27863252[0.017-0.035] unit increase0.02599643EFO_0004309
ENSG00000187555rs7190551168938158APlatelet distribution width27863252[0.024-0.043] unit increase0.0334153EFO_0007984
ENSG00000187555rs11551183168894835GMacrophage Migration Inhibitory Factor levels27989323[0.22-0.53] SD units decrease0.3715EFO_0008221
ENSG00000187555rs141361914168941610?Eosinophil counts30595370EFO_0004842
ENSG00000187555rs2304467168894920GChronotype306968231.0239831EFO_0008328
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000187555's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000187555USP79266.173FBgn0030366Usp79548.584Drosophila_melanogaster
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002039p53 binding20096447.IDAFunction
GO:0004197cysteine-type endopeptidase activity21873635.IBAFunction
GO:0004197cysteine-type endopeptidase activity21745816.IMPFunction
GO:0004843thiol-dependent ubiquitin-specific protease activity21873635.IBAFunction
GO:0004843thiol-dependent ubiquitin-specific protease activity16964248.21745816.26280536.IDAFunction
GO:0004843thiol-dependent ubiquitin-specific protease activity11923872.IMPFunction
GO:0004843thiol-dependent ubiquitin-specific protease activity-TASFunction
GO:0005515protein binding11279055.11923872.15916963.16402859.16474402.16713569.16845383.17268548.17936559.18566590.18716620.18729074.20601937.20697359.21170034.21745816.21988832.22056774.22466611.22466612.22653443.22810586.22863774.24823443.25172512.25266658.25544563.26496610.26678539.27123980.IPIFunction
GO:0005634nucleus16791210.HDAComponent
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus11279055.12093161.16964248.18410486.20096447.26678539.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005694chromosome-IEAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol11279055.IDAComponent
GO:0005829cytosol-TASComponent
GO:0006283transcription-coupled nucleotide-excision repair22466612.IMPProcess
GO:0006283transcription-coupled nucleotide-excision repair-TASProcess
GO:0006511ubiquitin-dependent protein catabolic process-IEAProcess
GO:0007275multicellular organism development-IEAProcess
GO:0008022protein C-terminus binding12093161.IPIFunction
GO:0008134transcription factor binding21873635.IBAFunction
GO:0008134transcription factor binding16964248.IPIFunction
GO:0010216maintenance of DNA methylation21745816.IMPProcess
GO:0016032viral process-IEAProcess
GO:0016567protein ubiquitination-TASProcess
GO:0016579protein deubiquitination21873635.IBAProcess
GO:0016579protein deubiquitination16964248.21745816.25172512.IDAProcess
GO:0016579protein deubiquitination11923872.18410486.26678539.27123980.IMPProcess
GO:0016579protein deubiquitination-TASProcess
GO:0016604nuclear body16791210.HDAComponent
GO:0016605PML body-IEAComponent
GO:0031625ubiquitin protein ligase binding11279055.18410486.18566590.IPIFunction
GO:0031647regulation of protein stability21873635.IBAProcess
GO:0031647regulation of protein stability27123980.IDAProcess
GO:0032088negative regulation of NF-kappaB transcription factor activity11279055.IDAProcess
GO:0032435negative regulation of proteasomal ubiquitin-dependent protein catabolic process26678539.IMPProcess
GO:0032991protein-containing complex26678539.IDAComponent
GO:0035520monoubiquitinated protein deubiquitination26280536.IDAProcess
GO:0035616histone H2B conserved C-terminal lysine deubiquitination-ISSProcess
GO:0036459thiol-dependent ubiquitinyl hydrolase activity21745816.IDAFunction
GO:0036459thiol-dependent ubiquitinyl hydrolase activity26678539.IMPFunction
GO:0036459thiol-dependent ubiquitinyl hydrolase activity-TASFunction
GO:0042752regulation of circadian rhythm27123980.IDAProcess
GO:0050821protein stabilization25172512.IDAProcess
GO:0050821protein stabilization18410486.IMPProcess
GO:0051090regulation of DNA-binding transcription factor activity21873635.IBAProcess
GO:0051090regulation of DNA-binding transcription factor activity16964248.IDAProcess
GO:0071108protein K48-linked deubiquitination-IEAProcess
GO:0101005ubiquitinyl hydrolase activity18410486.IMPFunction
GO:1901537positive regulation of DNA demethylation25944111.IDAProcess
GO:1904353regulation of telomere capping25172512.TASProcess
GO:1990380Lys48-specific deubiquitinase activity25944111.IDAFunction
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