EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1087709300Silentrs753690800T44T0.38
BLCAchr1087745151Silentrs7918595L542L0.83
BLCAchr1087715063Missense_MutationnovelE240K0.42
BLCAchr1087741325SilentNAL388L0.1
BLCAchr10877459923'UTRnovel0.15
BLCAchr1087713172SilentNAV81V0.61
BLCAchr1087741304Missense_MutationnovelD381N0.39
BRCAchr1087714105Missense_MutationnovelV148E0.11
BRCAchr1087727355Missense_MutationnovelC313G0.28
BRCAchr1087714854SilentNAL210L0.1
BRCAchr1087745919SilentNAP598P0.4
BRCAchr1087743501Missense_Mutationrs373228712G446S0.41
BRCAchr1087714047Missense_MutationNAR129C0.14
BRCAchr1087743537Missense_Mutationrs756961458R458W0.35
CESCchr1087727470Missense_MutationnovelT351K0.58
CESCchr10877475343'UTRnovel0.44
CESCchr1087743453SilentNAL430L0.12
CESCchr1087659993Missense_MutationNAI4M0.7
CESCchr1087714095Missense_MutationNAE145Q0.39
COADchr1087727322Missense_Mutationrs762088120V302I0.41
COADchr1087714096Missense_MutationnovelE145A0.38
COADchr10876599035'UTRnovel0.32
COADchr1087727448Missense_MutationNAR344C0.36
COADchr1087713305Missense_Mutationrs549258954A126T0.24
COADchr1087741358Nonsense_MutationNAE399*0.28
COADchr10876599075'UTRnovel0.55
COADchr1087714764SilentNAS180S0.35
COADchr10876599085'UTRrs106775600.21
ESCAchr1087659993SilentnovelI4I0.42
ESCAchr1087727406Missense_MutationnovelD330N0.29
GBMchr1087713100SilentnovelT57T0.18
GBMchr1087745178SilentnovelR551R0.21
HNSCchr1087743396Missense_Mutationrs374301331R411C0.2
HNSCchr10876599615'UTRnovel0.17
HNSCchr1087713188Frame_Shift_DelnovelR87Kfs*180.16
HNSCchr1087743414Missense_MutationnovelG417S0.11
HNSCchr1087715063Missense_MutationnovelE240K0.38
KIRCchr1087714129Missense_MutationNAE156G0.23
KIRPchr1087741255Silentrs771350788D364D0.3
KIRPchr1087743556Missense_MutationNAA464V0.54
KIRPchr1087714808Frame_Shift_InsnovelL196Ffs*60.34
LAMLchr1087713198Missense_MutationnovelG90A0.06
LIHCchr1087713101Missense_MutationnovelI58V0.33
LUADchr1087714149Missense_MutationNAL163I0.19
LUADchr1087745069Missense_MutationNAA515V0.1
LUADchr1087713104Missense_MutationnovelS59R0.04
LUADchr1087745140Frame_Shift_InsnovelG541Wfs*260.67
LUADchr1087715779SilentNAP267P0.13
LUADchr1087741363Missense_MutationnovelM400I0.09
LUADchr1087745833Missense_MutationnovelH570Y0.51
LUADchr1087715783Missense_MutationNAK269Q0.31
LUADchr1087743474Missense_Mutationrs755518410P437S0.13
LUADchr1087709293Missense_MutationnovelG42V0.06
LUADchr1087714814Missense_MutationnovelS197F0.19
LUSCchr10877460813'UTRnovel0.16
LUSCchr10876598835'UTRnovel0.86
LUSCchr1087743442Missense_Mutationrs755679218R426H0.25
LUSCchr1087743563Silentrs749432936L466L0.32
LUSCchr1087713176Missense_MutationnovelH83D0.25
OVchr1087727357Nonsense_MutationnovelC313*0.07
OVchr1087743439Missense_MutationNAT425S0.44
OVchr1087743409Frame_Shift_InsnovelN416Qfs*360.06
PAADchr1087660010Splice_SitenovelX9_splice0.1
PAADchr1087713275Missense_MutationnovelV116I0.19
PAADchr1087727353Missense_MutationnovelG312E0.17
PRADchr1087745932Missense_MutationNAV603I0.08
READchr10877460323'UTRnovel0.64
READchr1087743438Missense_MutationnovelT425P0.23
READchr1087713077Missense_MutationnovelL50I0.39
READchr1087741348Missense_MutationnovelQ395H0.43
SKCMchr1087745022SilentnovelS499S0.47
SKCMchr1087713090Missense_MutationNAG54E0.22
SKCMchr1087713158Missense_MutationNAD77N0.55
SKCMchr1087745177Missense_Mutationrs758144732R551Q0.58
SKCMchr1087715777Missense_MutationNAP267S0.41
SKCMchr1087713090Missense_MutationNAG54E0.43
SKCMchr1087714776SilentnovelK184K0.48
SKCMchr1087715034Missense_MutationNAP230Q0.39
SKCMchr1087715844Splice_SitenovelX289_splice0.3
SKCMchr1087709234SilentNAA22A0.27
SKCMchr1087709272Missense_MutationnovelG35E0.52
SKCMchr1087714095Missense_MutationnovelE145K0.42
STADchr1087745200Frame_Shift_DelnovelA561Pfs*210.31
STADchr1087709238Missense_MutationNAH24N0.09
STADchr1087727409Missense_Mutationrs766402310A331T0.36
STADchr1087741267Frame_Shift_DelnovelD370Efs*60.55
STADchr1087727345SilentNAR309R0.35
STADchr1087709301Missense_Mutationrs142362349V45M0.13
STADchr1087713233Missense_MutationNAR102W0.2
STADchr1087727396SilentnovelA326A0.1
STADchr1087743436Missense_Mutationrs201906347D424G0.11
UCECchr1087713196Silentrs144784084L89L0.33
UCECchr1087715021Missense_Mutationrs780333884E226K0.34
UCECchr1087660007Missense_MutationnovelT9M0.36
UCECchr1087741322Missense_Mutationrs751041210R387C0.4
UCECchr1087727334Missense_MutationNAD306N0.41
UCECchr10877475983'UTRnovel0.4
UCECchr1087743445Missense_Mutationrs758670430R427H0.47
UCECchr1087714142Frame_Shift_DelnovelG162Afs*380.35
UCECchr1087714758SilentnovelI178I0.4
UCECchr1087745863Nonsense_MutationnovelR580*0.27
UCECchr1087743476Silentrs369464332P437P0.54
UCECchr1087745176Nonsense_Mutationrs138386772R551*0.46
UCECchr1087745882Missense_Mutationrs749884085R586Q0.45
UCECchr1087715786Missense_MutationNAG270S0.18
UCECchr10877476363'UTRnovel0.42
UCECchr1087745146Missense_MutationnovelG541S0.13
UCECchr1087713100SilentnovelT57T0.52
UCECchr1087715021Missense_Mutationrs780333884E226K0.09
UCECchr1087743554Silentrs538183527A463A0.39
UCECchr1087713196Silentrs144784084L89L0.64
UCECchr1087745853SilentnovelI576I0.13
UCECchr10877460753'UTRnovel0.31
UCECchr10877475953'UTRnovel0.38
UCECchr10877475293'UTRnovel0.67
UCECchr1087713226SilentnovelN99N0.37
UCECchr1087727460Missense_MutationnovelT348A0.41
UCECchr1087715021Missense_Mutationrs780333884E226K0.33
UCECchr1087743518Silentrs377483950D451D0.43
UCECchr10877474433'UTRnovel0.6
UCECchr1087714145Missense_MutationnovelK161N0.58
UCECchr10877475203'UTRnovel0.67
UCECchr1087743413SilentnovelN416N0.33
UCECchr1087714175Missense_MutationnovelE171D0.31
UCECchr10877475203'UTRnovel0.16
UCECchr1087713238SilentNAI103I0.37
UCECchr1087709249Missense_MutationnovelR27S0.09
UCECchr1087745207Missense_MutationnovelA561D0.26
UCECchr1087727299Missense_MutationnovelM294T0.18
UCECchr1087727343Missense_Mutationrs199576612R309W0.17
UCECchr1087714810Missense_MutationnovelL196V0.42
UCECchr1087745028Missense_MutationnovelM501I0.33
UCECchr1087715021Missense_Mutationrs780333884E226K0.18
UCECchr10877475303'UTRnovel0.54
UCECchr1087714172SilentnovelG170G0.37
UCECchr1087743563Silentrs749432936L466L0.11
UCECchr1087741295SilentNAR378R0.54
UCECchr1087727283Splice_SitenovelX289_splice0.28
UCECchr1087714755SilentnovelG177G0.24
UCECchr1087745952SilentnovelR609R0.19
UCECchr1087713099Missense_MutationNAT57M0.26
UCECchr1087714182Nonsense_MutationNAG174*0.33
UCECchr1087727359Missense_MutationnovelS314I0.1
UCECchr1087713288Missense_MutationnovelS120N0.57
UCECchr1087714818SilentnovelT198T0.18
UCECchr1087713230Missense_MutationnovelR101C0.42

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCDEL0.11110.19593
COADDEL0.18181.3301e-14
PAADDEL0.1250.169
READDEL0.26060.014135
THCADEL0.0240.011063
THYMDEL0.03250.10563
UCSDEL0.30360.1218

Survival Analysis
CancerP-value Q-value
STAD0.0041

Kaplan-Meier Survival Analysis

UCS0.03

Kaplan-Meier Survival Analysis

SKCM0.0068

Kaplan-Meier Survival Analysis

LUSC0.04

Kaplan-Meier Survival Analysis

BRCA0.014

Kaplan-Meier Survival Analysis

COAD0.016

Kaplan-Meier Survival Analysis

PAAD0.0087

Kaplan-Meier Survival Analysis

BLCA0.0039

Kaplan-Meier Survival Analysis

CESC0.0032

Kaplan-Meier Survival Analysis

LAML0.018

Kaplan-Meier Survival Analysis

CHOL0.016

Kaplan-Meier Survival Analysis

THCA0.0021

Kaplan-Meier Survival Analysis

LUAD0.017

Kaplan-Meier Survival Analysis

UVM0.00011

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000198682 (Gene tree)
Gene ID
9060
Gene Symbol
PAPSS2
Alias
ATPSK2
Full Name
3'-phosphoadenosine 5'-phosphosulfate synthase 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
88,093 bases
Position
chr10:87,659,613-87,747,705
Accession
8604
RBP type
non-canonical RBP
Summary
Sulfation is a common modification of endogenous (lipids, proteins, and carbohydrates) and exogenous (xenobiotics and drugs) compounds. In mammals, the sulfate source is 3'-phosphoadenosine 5'-phosphosulfate (PAPS), created from ATP and inorganic sulfate. Two different tissue isoforms encoded by different genes synthesize PAPS. This gene encodes one of the two PAPS synthetases. Defects in this gene cause the Pakistani type of spondyloepimetaphyseal dysplasia. Two alternatively spliced transcript variants that encode different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000456849PAPSS2-2023856-ENSP00000406157619 (aa)-O95340
ENST00000482258PAPSS2-204424--- (aa)--
ENST00000465996PAPSS2-203275--- (aa)--
ENST00000361175PAPSS2-2013949-ENSP00000354436614 (aa)-O95340
Gene Model
Click here to download ENSG00000198682's gene model file
Pathways
Pathway IDPathway NameSource
hsa00230Purine metabolismKEGG
hsa00450Selenocompound metabolismKEGG
hsa00920Sulfur metabolismKEGG
hsa01100Metabolic pathwaysKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000198682Exercise4E-619727025
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000198682rs108877411087683553TLeisure-time exercise behaviour19727025[1.17-1.49]1.32EFO_0000483
ENSG00000198682rs171736981087709196?Heel bone mineral density30048462[0.044-0.07] unit decrease0.0574583EFO_0009270
ENSG00000198682rs78965051087717352?Heel bone mineral density30048462[0.013-0.021] unit increase0.0170634EFO_0009270
ENSG00000198682rs171736981087709196GHeel bone mineral density30598549[0.028-0.051] unit decrease0.0391802EFO_0009270
ENSG00000198682rs108877451087722114GHeel bone mineral density30598549[0.0097-0.0172] unit increase0.0134668EFO_0009270
ENSG00000198682rs171736981087709196?Heel bone mineral density30595370EFO_0009270
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000198682's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000198682PAPSS29878.369ENSG00000138801PAPSS19678.369Homo_sapiens
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000103sulfate assimilation21873635.IBAProcess
GO:0000103sulfate assimilation-IEAProcess
GO:0001501skeletal system development9771708.TASProcess
GO:0004020adenylylsulfate kinase activity21873635.IBAFunction
GO:0004781sulfate adenylyltransferase (ATP) activity-ISSFunction
GO:0005524ATP binding-IEAFunction
GO:0005829cytosol-TASComponent
GO:0007596blood coagulation-IEAProcess
GO:0016310phosphorylation-IEAProcess
GO:0016779nucleotidyltransferase activity-ISSFunction
GO:00504283'-phosphoadenosine 5'-phosphosulfate biosynthetic process21873635.IBAProcess
GO:00504283'-phosphoadenosine 5'-phosphosulfate biosynthetic process-TASProcess
GO:0060348bone development-IEAProcess
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