EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24085552ATG9A overexpression is associated with disease recurrence and poor survival in patients with oral squamous cell carcinoma.Virchows Arch2013 DecTang JYdoi: 10.1007/s00428-013-1482-5
29048433TMEM74 promotes tumor cell survival by inducing autophagy via interactions with ATG16L1 and ATG9A.Cell Death Dis2017 Aug 31Sun Ydoi: 10.1038/cddis.2017.370.
27758042Mammalian autophagy and the plasma membrane.FEBS J2017 MarPavel Mdoi: 10.1111/febs.13931

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr2219226893Missense_MutationnovelL63R0.19
BLCAchr2219226894Missense_MutationnovelL63I0.19
BLCAchr2219224579SilentNAL264L0.3
BLCAchr2219222666SilentnovelQ609Q0.15
BLCAchr2219225144Missense_MutationnovelI148T0.92
BLCAchr2219220865Missense_MutationNAS799C0.2
BLCAchr2219220858SilentNAF801F0.23
BRCAchr2219223683Missense_MutationNAI501L0.27
BRCAchr2219222772Frame_Shift_DelnovelR571Qfs*40.16
BRCAchr2219224520Missense_MutationnovelQ284R0.08
BRCAchr2219222701Missense_MutationNAL598M0.15
BRCAchr2219222382SilentnovelL639L0.15
BRCAchr2219223668Nonsense_MutationNAR506*0.3
BRCAchr2219225458SilentNAK109K0.23
CESCchr22192202253'UTRnovel0.24
CESCchr2219222445SilentnovelL618L0.09
CESCchr2219223904Missense_MutationNAR462W0.12
CESCchr22192295835'UTRnovel0.5
CESCchr22192295835'UTRnovel0.78
CESCchr2219224349Missense_MutationnovelR341H0.51
CESCchr2219222416Missense_MutationNAS628L0.45
CHOLchr2219222436SilentnovelI621I0.09
COADchr2219224222Silentrs756437040F383F0.4
COADchr2219226913Missense_MutationnovelK56N0.32
COADchr2219223699SilentnovelR495R0.44
COADchr22192202893'UTRnovel0.25
COADchr2219220750SilentNAH837H0.16
COADchr2219224703Missense_MutationnovelV223A0.08
COADchr2219228018Nonsense_MutationnovelQ3*0.14
COADchr2219224825SilentNAE182E0.8
COADchr2219226870Missense_Mutationrs757225337M71V0.22
COADchr2219224304Missense_Mutationrs570750110R356H0.3
COADchr2219221224Missense_Mutationrs777855989A742T0.44
COADchr2219224524Missense_MutationNAA283T0.23
COADchr2219224348SilentnovelR341R0.22
COADchr2219224712Missense_MutationnovelV220A0.36
ESCAchr2219223971Silentrs372559203R439R0.33
ESCAchr2219224680Missense_Mutationrs200810317R231C0.21
ESCAchr2219224739Missense_Mutationrs763159203R211H0.33
ESCAchr2219223823Splice_SitenovelX469_splice0.1
GBMchr2219224814Missense_MutationnovelR186Q0.68
GBMchr2219224296Missense_MutationnovelK359Q0.63
HNSCchr2219220853Missense_MutationnovelR803Q0.2
HNSCchr2219226933Missense_Mutationrs761159469V50I0.17
HNSCchr2219222786Frame_Shift_DelnovelW567Cfs*90.04
KIRPchr2219225567Missense_MutationNAF73C0.36
KIRPchr2219225515Silentrs770730811D90D0.28
KIRPchr22192203743'UTRnovel0.39
LGGchr2219224844Missense_Mutationrs770289897P176L0.43
LIHCchr2219222345Missense_MutationnovelL652V0.29
LUADchr2219225533Silentrs762494956V84V0.25
LUADchr2219222422Missense_MutationnovelA626V0.18
LUADchr2219225086SilentnovelA167A0.53
LUADchr2219222777SilentNAE572E0.28
LUADchr2219220848Missense_MutationnovelP805A0.31
LUADchr22192203513'UTRnovel0.11
LUADchr2219227970Missense_MutationNAP19S0.15
LUADchr2219224326Missense_Mutationrs761352054E349K0.09
LUADchr2219222381Nonsense_MutationNAQ640*0.59
LUSCchr2219224730Missense_MutationnovelR214H0.28
LUSCchr2219224637Missense_Mutationrs771444739R245H0.26
LUSCchr2219225206Missense_MutationnovelQ127H0.47
LUSCchr2219224689SilentNAL228L0.23
LUSCchr2219222666Missense_MutationnovelQ609H0.55
LUSCchr2219222334SilentnovelF655F0.27
OVchr2219223938Missense_MutationnovelD450E0.11
OVchr2219222745Frame_Shift_InsnovelQ583Lfs*100.07
OVchr2219224394Missense_MutationnovelA326D0.31
OVchr2219223913Missense_MutationnovelS459T0.15
OVchr2219226907SilentnovelG58G0.08
OVchr2219227804Missense_MutationnovelH38P0.04
OVchr2219224490Missense_MutationnovelG294A0.18
OVchr2219224832Missense_MutationnovelW180L0.27
OVchr2219222858Nonsense_MutationnovelY545*0.07
OVchr2219225083SilentnovelL168L0.12
OVchr2219224751Missense_MutationnovelD207G0.09
OVchr2219224024Splice_SitenovelX422_splice0.26
OVchr2219224679Missense_MutationNAR231P0.17
PAADchr2219224505Missense_Mutationrs766744605R289H0.21
PAADchr2219224177Silentrs759315800D398D0.19
PRADchr2219222681SilentNAL604L0.14
PRADchr2219223639Frame_Shift_DelnovelV513Gfs*340.06
PRADchr2219224688Missense_MutationnovelL228P0.42
PRADchr2219226934Splice_SiteNAX50_splice0.28
READchr2219224559Missense_MutationnovelA271V0.13
READchr2219227935Silentrs774573448A30A0.26
READchr2219225475Missense_MutationNAP104S0.64
READchr2219221251Missense_Mutationrs781020199R733W0.34
READchr2219220873Missense_MutationnovelR796S0.17
READchr2219222663SilentNAS610S0.38
SKCMchr2219224444SilentNAI309I0.31
SKCMchr2219223736Missense_MutationNAP483L0.19
SKCMchr2219225142Missense_MutationNAK149E0.36
SKCMchr2219222300Missense_Mutationrs545980763R667W0.2
SKCMchr2219223691Missense_MutationNAA498V0.48
SKCMchr2219224486Silentrs568908389I295I0.21
SKCMchr2219221148Missense_MutationnovelP767L0.25
SKCMchr2219224486Silentrs568908389I295I0.21
SKCMchr2219220760Frame_Shift_DelnovelP834Lfs*100.21
SKCMchr2219223902SilentnovelR462R0.08
SKCMchr2219223903Missense_MutationnovelR462Q0.07
SKCMchr2219224210Missense_MutationNAI387M0.41
SKCMchr2219225563SilentNAL74L0.77
SKCMchr2219222413Missense_MutationNAS629F0.14
SKCMchr2219223968SilentnovelV440V0.18
SKCMchr2219223648Silentrs752664977V512V0.24
SKCMchr2219225475Missense_MutationNAP104S0.2
SKCMchr2219225563SilentNAL74L0.18
SKCMchr2219224285SilentNAS362S0.32
STADchr2219222150Missense_MutationNAA682G0.17
STADchr2219224834Silentrs373511038T179T0.21
STADchr2219226933Missense_Mutationrs761159469V50I0.18
STADchr2219225442Missense_Mutationrs766008146A115T0.26
STADchr2219223912Missense_MutationNAS459L0.21
STADchr2219222353Missense_MutationNAA649V0.32
STADchr2219224685Missense_MutationnovelP229H0.35
STADchr2219221143Missense_MutationnovelP769A0.19
STADchr2219224105Splice_SitenovelX422_splice0.38
STADchr2219224421Missense_MutationNAA317V0.13
STADchr2219220794Missense_MutationNAV823M0.28
STADchr2219223940Missense_MutationNAD450N0.27
STADchr2219222685Missense_MutationnovelA603V0.07
STADchr2219222688Frame_Shift_DelnovelN602Mfs*170.06
STADchr2219225527Silentrs541694613C86C0.47
THYMchr2219226889SilentnovelI64I0.31
UCECchr2219221188Frame_Shift_DelNAQ754Sfs*900.22
UCECchr2219224120Silentrs369031181T417T0.44
UCECchr2219225466Missense_MutationnovelP107T0.16
UCECchr2219222683Missense_MutationnovelL604I0.08
UCECchr2219223904Missense_MutationNAR462W0.15
UCECchr2219227996Missense_MutationnovelR10H0.19
UCECchr2219223647Missense_Mutationrs199801466V513I0.25
UCECchr2219224824Missense_MutationnovelV183M0.52
UCECchr22192284555'UTRnovel0.1
UCECchr2219222342Missense_Mutationrs762480185R653C0.4
UCECchr2219225565Missense_MutationnovelL74I0.28
UCECchr2219224469Missense_MutationnovelC301F0.43
UCECchr2219222365Missense_MutationNAR645M0.38
UCECchr2219221093Silentrs758970707Y785Y0.42
UCECchr2219224401Missense_MutationNAP324S0.21
UCECchr2219224809Missense_Mutationrs201418627V188M0.23
UCECchr2219224548Missense_MutationNAR275C0.34
UCECchr2219220839Missense_MutationnovelG808W0.22
UCECchr2219223648Silentrs752664977V512V0.5
UCECchr2219228019Silentrs751128242A2A0.38
UCECchr22192194413'Flanknovel0.43
UCECchr22192195953'Flanknovel0.44
UCECchr2219227998SilentnovelQ9Q0.11
UCECchr22192203823'UTRnovel0.33
UCECchr2219221175Missense_Mutationrs377367353R758H0.37
UCECchr22192203703'UTRnovel0.64
UCECchr2219220879SilentnovelV794V0.36
UCECchr2219222744Missense_MutationnovelQ583H0.29
UCECchr2219224385Missense_MutationnovelA329V0.44
UCECchr22192193173'Flanknovel0.53
UCECchr2219221184Missense_MutationnovelS755Y0.42
UCECchr2219222830SilentNAL555L0.16
UCECchr2219225085SilentNAL168L0.38
UCECchr2219225463Missense_Mutationrs117094218V108I0.36
UCECchr22192295845'UTRnovel0.47
UCECchr22192194463'Flanknovel0.27
UCECchr22192280325'UTRrs3737111350.34
UCECchr2219224518Missense_MutationnovelR285C0.32
UCECchr2219224252SilentnovelL373L0.24
UCECchr2219224450Nonsense_MutationnovelW307*0.1
UCECchr2219224780SilentnovelC197C0.07
UCECchr22192195873'Flanknovel0.3
UCECchr2219222379Missense_MutationnovelQ640H0.27
UCECchr2219224003Missense_MutationnovelH429Y0.34
UCECchr2219223667Missense_MutationNAR506Q0.42
UCECchr2219220794Missense_MutationNAV823M0.33
UCECchr2219223972Missense_Mutationrs199900351R439H0.2
UCECchr2219224361Missense_Mutationrs766730899R337H0.29
UCECchr2219220789SilentnovelP824P0.42
UCECchr2219223994Missense_MutationnovelF432V0.15
UCECchr2219224485Missense_Mutationrs549042911A296T0.25
UCECchr2219225134SilentnovelI151I0.27
UCECchr2219227768Splice_SitenovelX49_splice0.21
UCECchr2219224680Missense_Mutationrs200810317R231C0.41
UCECchr2219227971SilentnovelS18S0.37
UCECchr2219222870Missense_MutationNAE541D0.13
UCECchr2219222811Missense_MutationnovelA561V0.43
UCECchr22192194593'Flanknovel0.32
UCECchr2219222789SilentnovelQ568Q0.28
UCECchr22192202463'UTRnovel0.34
UVMchr2219221302Missense_MutationnovelL716V0.29

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
HNSCDEL0.21651.278e-25
KIRPDEL0.03825.174e-05
LUSCDEL0.23951.3904e-19
MESODEL0.11490.014499
PAADAMP0.07070.1091
PAADDEL0.0380.2014
THCADEL0.0240.040844
THYMDEL0.01630.10691

Survival Analysis
CancerP-value Q-value
KIRC0.038

Kaplan-Meier Survival Analysis

SARC0.019

Kaplan-Meier Survival Analysis

MESO0.0023

Kaplan-Meier Survival Analysis

ACC0.0001

Kaplan-Meier Survival Analysis

SKCM0.00012

Kaplan-Meier Survival Analysis

BRCA0.039

Kaplan-Meier Survival Analysis

KIRP0.025

Kaplan-Meier Survival Analysis

BLCA0.024

Kaplan-Meier Survival Analysis

UCEC0.04

Kaplan-Meier Survival Analysis

LIHC0.00011

Kaplan-Meier Survival Analysis

UVM0.038

Kaplan-Meier Survival Analysis

OV0.016

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000198925 (Gene tree)
Gene ID
79065
Gene Symbol
ATG9A
Alias
FLJ22169|APG9L1
Full Name
autophagy related 9A
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
10,338 bases
Position
chr2:219,219,380-219,229,717
Accession
22408
RBP type
non-canonical RBP
Summary
(Autophagy Related 9A) is a Protein Coding gene. Diseases associated with ATG9A include Age-Related Hearing Loss. Among its related pathways are Mitophagy - animal and Autophagy Pathway. Gene Ontology (GO) annotations related to this gene include heme-copper terminal oxidase activity. An important paralog of this gene is ATG9B.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000409422ATG9A-2042512-ENSP00000386535778 (aa)-Q7Z3C6
ENST00000396761ATG9A-2023799-ENSP00000379983839 (aa)-Q7Z3C6
ENST00000457841ATG9A-217699-ENSP00000404750172 (aa)-C9JDK4
ENST00000412355ATG9A-206574-ENSP0000039370898 (aa)-F2Z3I6
ENST00000436856ATG9A-212893-ENSP00000401530187 (aa)-C9JXG2
ENST00000466217ATG9A-218594--- (aa)--
ENST00000409033ATG9A-2033701-ENSP00000386482528 (aa)-Q7Z3C6
ENST00000456708ATG9A-216576-ENSP0000039070498 (aa)-F2Z3I6
ENST00000434939ATG9A-211568-ENSP0000039434593 (aa)-C9JS65
ENST00000431715ATG9A-209581-ENSP00000396404133 (aa)-C9JD65
ENST00000488833ATG9A-221487--- (aa)--
ENST00000432520ATG9A-210796-ENSP00000406785144 (aa)-C9IYZ9
ENST00000361242ATG9A-2013130-ENSP00000355173839 (aa)-Q7Z3C6
ENST00000409618ATG9A-2054025-ENSP00000386710839 (aa)-Q7Z3C6
ENST00000439812ATG9A-213589-ENSP00000413569131 (aa)-C9JX27
ENST00000428226ATG9A-207700-ENSP00000409164169 (aa)-C9JKV7
ENST00000475339ATG9A-219812--- (aa)--
ENST00000443140ATG9A-214685-ENSP0000041643597 (aa)-C9JFV2
ENST00000486766ATG9A-220579--- (aa)--
ENST00000455079ATG9A-215558--- (aa)--
ENST00000429920ATG9A-208733-ENSP00000400234244 (aa)-H7C1G6
Gene Model
Click here to download ENSG00000198925's gene model file
Pathways
Pathway IDPathway NameSource
hsa04136Autophagy - otherKEGG
hsa04137Mitophagy - animalKEGG
hsa04140Autophagy - animalKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000198925's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000045autophagosome assembly21873635.IBAProcess
GO:0000045autophagosome assembly15755735.22456507.IMPProcess
GO:0000407phagophore assembly site21873635.IBAComponent
GO:0000407phagophore assembly site22456507.IDAComponent
GO:0000421autophagosome membrane22456507.IDAComponent
GO:0000422autophagy of mitochondrion21873635.IBAProcess
GO:0005515protein binding19893488.21903422.24603492.25416956.IPIFunction
GO:0005768endosome23093945.IDAComponent
GO:0005770late endosome22456507.IDAComponent
GO:0005776autophagosome21873635.IBAComponent
GO:0005789endoplasmic reticulum membrane-IEAComponent
GO:0005802trans-Golgi network22456507.23093945.IDAComponent
GO:0015031protein transport-IEAProcess
GO:0016020membrane19946888.HDAComponent
GO:0016021integral component of membrane-IEAComponent
GO:0031902late endosome membrane-IEAComponent
GO:0034497protein localization to phagophore assembly site21873635.IBAProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0044805late nucleophagy21873635.IBAProcess
GO:0055037recycling endosome22456507.IDAComponent
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