EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
28093071SPAG6 and L1TD1 are transcriptionally regulated by DNA methylation in non-small cell lung cancers.Mol Cancer2017 Jan 5Altenberger Cdoi: 10.1186/s12943-016-0568-5.
21445976LINE-1 hypomethylation is associated with bladder cancer risk among nonsmoking Chinese.Int J Cancer2012 Mar 1Cash HLdoi: 10.1002/ijc.26098
23179365LINE-1 hypomethylation in gastric cancer, detected by bisulfite pyrosequencing, is associated with poor prognosis.Gastric Cancer2013 OctShigaki Hdoi: 10.1007/s10120-012-0209-7

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr162209919Missense_MutationnovelS382F0.08
BLCAchr1622114423'UTRrs5356616310.08
BLCAchr162210080Missense_MutationnovelE436Q0.14
BLCAchr162211342Missense_MutationnovelL856F0.41
BLCAchr162209942Missense_MutationnovelE390K0.1
BLCAchr1622113773'UTRrs7707777150.26
BRCAchr162210152Missense_MutationnovelI460L0.49
BRCAchr162206648Missense_MutationNAS7I0.44
BRCAchr162207540SilentNAS304S0.2
BRCAchr162211118Nonsense_MutationNAE782*0.21Transposase_22
BRCAchr162206804Missense_MutationNAM59K0.18
CESCchr162206986Missense_MutationnovelE120K0.19
CESCchr162206639Missense_MutationnovelV4A0.42
CESCchr162210941Nonsense_MutationNAE723*0.4Transposase_22
CESCchr162210456Missense_MutationnovelS561L0.19
CESCchr162209887Missense_MutationnovelM371I0.28
CESCchr162206873Missense_MutationNAG82A0.33
CHOLchr162207184Nonsense_MutationnovelG186*0.07
COADchr162206910Missense_MutationNAE94D0.42
COADchr162207133Missense_Mutationrs751577233E169K0.06
COADchr162207274Missense_MutationnovelK216Q0.1
COADchr162210483Missense_MutationnovelK570T0.34
COADchr162210848Missense_MutationnovelD692N0.29
COADchr162207078SilentNAN150N0.1
COADchr162210627Missense_MutationnovelR618I0.05
COADchr1622114423'UTRrs5356616310.42
COADchr162210019SilentNAE415E0.05
COADchr162210649SilentnovelI625I0.1
COADchr162206884Missense_MutationNAT86A0.41
COADchr1622113803'UTRnovel0.27
COADchr162210374Missense_Mutationrs146015306E534K0.4
COADchr1622115463'UTRnovel0.29
COADchr162210120Missense_MutationnovelH449R0.09
COADchr162206884Missense_MutationNAT86A0.1
COADchr1622066135'UTRnovel0.43
COADchr162210822Frame_Shift_DelnovelQ683Hfs*30.25
COADchr1622066225'UTRnovel0.1
COADchr162207527Missense_MutationNAR300I0.17
COADchr162207326In_Frame_DelnovelK234del0.05
COADchr162210285Missense_Mutationrs534791481R504H0.22
COADchr162207439Missense_MutationNAD271Y0.09
COADchr162206687Missense_MutationnovelE20G0.29
COADchr162210324Missense_MutationNAD517G0.29
COADchr162207133Missense_Mutationrs751577233E169K0.19
COADchr162211040Missense_MutationnovelT756A0.2Transposase_22
COADchr162207079Nonsense_Mutationrs771642989E151*0.36
ESCAchr1622115203'UTRnovel0.75
GBMchr1622114413'UTRrs5747184470.37
GBMchr162209921Missense_Mutationrs778590430E383K0.4
GBMchr162211316Missense_MutationnovelD848Y0.29
HNSCchr1622115453'UTRnovel0.4
HNSCchr1622114973'UTRnovel0.23
HNSCchr162206978Missense_MutationnovelG117E0.19
KIRCchr162207456Missense_MutationNAF276L0.2
KIRPchr162207007Missense_MutationNAG127R0.45
LGGchr1622114103'UTRnovel0.25
LGGchr162210475SilentnovelD567D0.28
LGGchr162210372Missense_MutationnovelQ533L0.22
LIHCchr162210702Missense_MutationNAL643S0.3
LIHCchr162210506Missense_MutationnovelS578C0.33
LUADchr162210053Missense_MutationNAD427Y0.24
LUADchr162206972Missense_MutationnovelM115K0.12
LUADchr162206924Frame_Shift_DelnovelR99Nfs*260.25
LUADchr162210284Missense_MutationnovelR504S0.12
LUADchr162211203Missense_MutationNAV810D0.31
LUADchr162210284Missense_Mutationrs139433745R504C0.18
LUADchr1622114213'UTRrs793645970.08
LUADchr1622114213'UTRnovel0.05
LUSCchr162210065Missense_MutationnovelG431W0.27
LUSCchr162210066Missense_MutationNAG431V0.25
LUSCchr162209848SilentNAL358L0.16
LUSCchr162206990Missense_MutationNAG121E0.18
LUSCchr162209841Missense_MutationnovelS356T0.38
LUSCchr162206977Missense_MutationNAG117W0.39
LUSCchr162210466Missense_MutationnovelM564I0.19
LUSCchr1622114693'UTRnovel0.25
OVchr162210185In_Frame_DelNAD471_V473del0.42
OVchr162210911Missense_MutationNAY713D0.71Transposase_22
OVchr162211320Missense_MutationNAY849C0.43
OVchr162210507Missense_MutationnovelS578I0.16
OVchr162210096Missense_MutationNAE441G0.27
OVchr162206932Frame_Shift_DelNAQ103Sfs*30.23
PRADchr162206958SilentnovelL110L0.32
READchr162210821Missense_MutationNAQ683E0.33
READchr162206733Missense_MutationnovelK35N0.33
READchr162210788Nonsense_MutationnovelE672*0.58
READchr1622065765'UTRnovel0.37
READchr162207071Missense_MutationNAN148T0.13
SARCchr162206827Missense_MutationnovelE67K0.53
SARCchr162206970SilentnovelG114G0.56
SARCchr162207175Missense_MutationnovelD183N0.55
SARCchr162210316Silentrs747279476L514L0.53
SARCchr162207178Missense_MutationnovelR184G0.1
SKCMchr162210071Missense_MutationNAE433K0.39
SKCMchr1622114613'UTRnovel0.52
SKCMchr162210017Missense_MutationNAE415K0.62
SKCMchr162210052SilentnovelE426E0.17
SKCMchr162207110Missense_MutationNAP161L0.26
SKCMchr1622114423'UTRrs5356616310.34
SKCMchr162206979SilentNAG117G0.21
SKCMchr162209921Missense_Mutationrs778590430E383K0.43
SKCMchr162210558Missense_MutationnovelR595K0.44
SKCMchr162206806Missense_MutationnovelE60K0.25
SKCMchr162210430SilentNAT552T0.54
SKCMchr162206969Missense_MutationNAG114E0.23
SKCMchr162209990Missense_MutationNAE406K0.27
SKCMchr162210447Missense_Mutationrs776310502P558L0.29
SKCMchr1622114593'UTRnovel0.29
SKCMchr162206969Missense_MutationNAG114E0.5
SKCMchr162210308Missense_MutationNAS512G0.16
SKCMchr162211346Missense_MutationnovelE858K0.47
SKCMchr162210243Missense_MutationnovelG490E0.23
SKCMchr162206915Missense_MutationNAS96F0.43
SKCMchr162207019Missense_MutationnovelE131K0.31
SKCMchr162210197Missense_MutationnovelD475N0.23
SKCMchr162206839Missense_MutationNAE71K0.67
SKCMchr162207079Missense_MutationNAE151K0.63
SKCMchr162207079Missense_MutationNAE151K0.56
SKCMchr162210209Missense_Mutationrs754363697E479K0.96
SKCMchr162210043SilentNAG423G0.34
SKCMchr162210296Missense_MutationNAE508K0.28
SKCMchr162206946SilentNAI106I0.75
SKCMchr162209783Missense_MutationNAD337N0.21
SKCMchr162206876Missense_MutationNAG83E0.34
SKCMchr162210545Missense_MutationNAE591K0.24
SKCMchr162209845SilentNAF357F0.48
SKCMchr162206839Missense_MutationNAE71K0.25
SKCMchr162210215Missense_MutationNAE481K0.28
SKCMchr162210020Missense_MutationNAE416K0.59
SKCMchr162210487Silentrs758340016K571K0.3
SKCMchr162209881SilentNAE369E0.44
SKCMchr162207013Missense_MutationNAD129N0.15
SKCMchr162210302Missense_Mutationrs752701856P510S0.11
SKCMchr162209845SilentNAF357F0.28
SKCMchr162210397SilentNAP541P0.29
SKCMchr162210225Missense_MutationNAG484E0.38
SKCMchr162211354SilentNAL860L0.29
SKCMchr162206979SilentNAG117G0.17
SKCMchr162210377Missense_Mutationrs765706497E535K0.4
SKCMchr162209987Missense_MutationNAE405K0.45
SKCMchr162210369Missense_MutationnovelT532I0.26
STADchr162210186Missense_MutationNAD471V0.12
STADchr162210362Missense_MutationNAH530Y0.19
STADchr1622115473'UTRnovel0.26
STADchr162210472Silentrs540884928H566H0.1
STADchr162206959Frame_Shift_Insrs753466100T113Nfs*130.13
STADchr1622115473'UTRnovel0.4
UCECchr162206891Missense_MutationNAP88H0.37
UCECchr162211118Nonsense_MutationNAE782*0.33Transposase_22
UCECchr162206726Missense_MutationNAT33I0.24
UCECchr162210478SilentnovelE568E0.29
UCECchr1622114263'UTRnovel0.29
UCECchr162207272Missense_MutationNAR215I0.59
UCECchr162209974SilentNAT400T0.36
UCECchr162210793Missense_MutationNAF673L0.45
UCECchr162210986Missense_Mutationrs112463438L738I0.41Transposase_22
UCECchr162211307Nonsense_MutationNAE845*0.39
UCECchr162207269Missense_MutationnovelE214V0.4
UCECchr162210408Missense_MutationnovelG545E0.47
UCECchr162206910Missense_MutationNAE94D0.48
UCECchr162210844SilentnovelQ690Q0.72
UCECchr162206697SilentnovelT23T0.38
UCECchr162206929Nonsense_MutationnovelE101*0.46
UCECchr162207025Missense_MutationnovelL133V0.3
UCECchr162207176Missense_Mutationrs773253339D183G0.2
UCECchr162210032Nonsense_MutationnovelE420*0.32
UCECchr162210529Missense_MutationnovelK585N0.3
UCECchr162207191Missense_MutationnovelR188H0.05
UCECchr162209908Missense_MutationNAE378D0.08
UCECchr162210861Missense_MutationNAR696K0.18
UCECchr162206917Missense_MutationNAS97R0.13
UCECchr162210827Missense_MutationnovelI685V0.08
UCECchr162207347Missense_MutationnovelG240E0.15
UCECchr162210666Missense_MutationNAE631A0.37
UCECchr162210793Missense_MutationNAF673L0.43
UCECchr162209802Missense_MutationnovelS343L0.24
UCECchr162206727SilentnovelT33T0.67
UCECchr162211084Missense_MutationnovelK770N0.39Transposase_22
UCECchr162206675Missense_MutationnovelA16V0.31
UCECchr162206743Missense_Mutationrs114926803P39S0.23
UCECchr162210545Missense_MutationnovelE591Q0.44
UCECchr162210019SilentNAE415E0.36
UCECchr162207190Missense_Mutationrs541962027R188C0.33
UCECchr162207274Missense_MutationnovelK216Q0.56
UCECchr162211346Nonsense_MutationnovelE858*0.82
UCECchr162206776Missense_MutationnovelA50S0.34
UCECchr162210415SilentnovelG547G0.33
UCECchr162210407Nonsense_MutationnovelG545*0.36
UCECchr162210205Missense_MutationnovelE477D0.7
UCECchr162210779Missense_MutationnovelQ669K0.33
UCECchr162207205Nonsense_MutationNAE193*0.36
UCECchr162210334Missense_MutationNAK520N0.45
UCECchr162210759Missense_MutationNAR662K0.3
UCECchr162207193Missense_MutationnovelN189D0.3
UCECchr162207443Missense_MutationnovelF272C0.14
UCECchr162207197Missense_MutationnovelV190A0.24
UCECchr162210011Missense_MutationnovelL413M0.4
UCECchr1622114413'UTRrs5747184470.28
UCECchr162210430SilentNAT552T0.48
UCECchr162207102Missense_Mutationrs367875859K158N0.52
UCECchr162207489SilentnovelD287D0.36
UCECchr162207439Missense_MutationNAD271Y0.47
UCECchr162210296Nonsense_MutationNAE508*0.38
UCECchr162210790Missense_MutationNAE672D0.45
UCECchr162210854Missense_Mutationrs546879656E694K0.28
UCECchr162206901Missense_MutationNAK91N0.37
UCECchr162207527Missense_MutationNAR300I0.29
UCECchr162210253Missense_MutationnovelK493N0.31
UCECchr162210793Missense_MutationNAF673L0.44
UCECchr162209789Missense_MutationnovelT339A0.25
UCECchr162211102SilentnovelA776A0.31
UCECchr1622117363'UTRnovel0.24
UCECchr162210463Missense_MutationnovelE563D0.53
UCECchr162207464Missense_MutationnovelE279G0.5
UCECchr162210061SilentNAA429A0.4
UCECchr1622116283'UTRnovel0.32
UCECchr162206992Nonsense_MutationnovelE122*0.27
UCSchr162210575Nonsense_MutationnovelE601*0.36

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
COADDEL0.23060.00038973
TGCTDEL0.160.023574

Survival Analysis
CancerP-value Q-value
MESO0.042

Kaplan-Meier Survival Analysis

LUSC0.016

Kaplan-Meier Survival Analysis

BRCA0.0032

Kaplan-Meier Survival Analysis

KIRP0.021

Kaplan-Meier Survival Analysis

READ0.037

Kaplan-Meier Survival Analysis

LAML0.014

Kaplan-Meier Survival Analysis

LGG0.016

Kaplan-Meier Survival Analysis

LUAD0.0044

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000240563 (Gene tree)
Gene ID
54596
Gene Symbol
L1TD1
Alias
FLJ10884|ECAT11
Full Name
LINE1 type transposase domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
17,527 bases
Position
chr1:62,194,802-62,212,328
Accession
25595
RBP type
canonical RBP
Summary
(LINE1 Type Transposase Domain Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity and obsolete signal transducer activity.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000419901Transposase_22PF02994.142.3e-2411

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
22162396RNA-binding protein L1TD1 interacts with LIN28 via RNA and is required for human embryonic stem cell self-renewal and cancer cell proliferation.Stem Cells2012 MarNarva Edoi: 10.1002/stem.1013.
25702638The L1TD1 protein interactome reveals the importance of post-transcriptional regulation in human pluripotency.Stem Cell Reports2015 Mar 10Emani MRdoi: 10.1016/j.stemcr.2015.01.014
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000498273L1TD1-2013849-ENSP00000419901865 (aa)-Q5T7N2
Gene Model
Click here to download ENSG00000240563's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000240563Bone Density9E-628181694
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000240563rs6656763162196120GLip morphology29921221[NR] unit decrease0.017EFO_0007845
ENSG00000240563rs7542665162207365CColorectal cancer30529582[1.05-1.11]1.08EFO_0005842
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000240563's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000240563L1TD19962.572ENSAMEG00000014821L1TD19962.442Ailuropoda_melanoleuca
ENSG00000240563L1TD17885.921ENSCJAG00000038509L1TD19587.361Callithrix_jacchus
ENSG00000240563L1TD15451.200ENSCAFG00020012951L1TD15851.005Canis_lupus_dingo
ENSG00000240563L1TD110087.313ENSCATG00000038295L1TD19989.286Cercocebus_atys
ENSG00000240563L1TD110086.736ENSCSAG00000001337L1TD19987.185Chlorocebus_sabaeus
ENSG00000240563L1TD110088.249ENSCANG00000042261L1TD19988.594Colobus_angolensis_palliatus
ENSG00000240563L1TD19947.680ENSCGRG00001024238L1td19947.197Cricetulus_griseus_chok1gshd
ENSG00000240563L1TD19947.680ENSCGRG00000011853L1td19947.197Cricetulus_griseus_crigri
ENSG00000240563L1TD19954.943ENSDNOG00000039645-10054.891Dasypus_novemcinctus
ENSG00000240563L1TD19951.185ENSDNOG00000040097-10051.659Dasypus_novemcinctus
ENSG00000240563L1TD19958.392ENSEASG00005008811L1TD16365.426Equus_asinus_asinus
ENSG00000240563L1TD15037.500ENSECAG00000028123-6540.249Equus_caballus
ENSG00000240563L1TD19955.923ENSECAG00000013248L1TD18064.066Equus_caballus
ENSG00000240563L1TD19961.601ENSFCAG00000042658L1TD19960.343Felis_catus
ENSG00000240563L1TD110097.347ENSGGOG00000026365L1TD110097.347Gorilla_gorilla
ENSG00000240563L1TD110087.082ENSMFAG00000031887L1TD19988.825Macaca_fascicularis
ENSG00000240563L1TD110088.594ENSMNEG00000030098L1TD19988.594Macaca_nemestrina
ENSG00000240563L1TD110089.516ENSMLEG00000039743L1TD19989.516Mandrillus_leucophaeus
ENSG00000240563L1TD16353.950ENSMAUG00000020769L1td16056.349Mesocricetus_auratus
ENSG00000240563L1TD19968.023ENSMICG00000045847L1TD19967.049Microcebus_murinus
ENSG00000240563L1TD15154.299ENSMOCG00000007037L1td15657.500Microtus_ochrogaster
ENSG00000240563L1TD16051.064MGP_CAROLIEiJ_G0026185L1td15454.444Mus_caroli
ENSG00000240563L1TD16051.179ENSMUSG00000087166L1td15952.800Mus_musculus
ENSG00000240563L1TD16049.531MGP_PahariEiJ_G0028522L1td15452.394Mus_pahari
ENSG00000240563L1TD16050.708MGP_SPRETEiJ_G0027153L1td15952.800Mus_spretus
ENSG00000240563L1TD18850.852ENSNGAG00000000776L1td19450.526Nannospalax_galili
ENSG00000240563L1TD110092.857ENSNLEG00000014904L1TD19992.742Nomascus_leucogenys
ENSG00000240563L1TD110097.575ENSPPAG00000043606L1TD110097.575Pan_paniscus
ENSG00000240563L1TD19961.547ENSPPRG00000011113L1TD19961.618Panthera_pardus
ENSG00000240563L1TD110097.806ENSPTRG00000034387L1TD110097.806Pan_troglodytes
ENSG00000240563L1TD110087.082ENSPANG00000021627L1TD19987.872Papio_anubis
ENSG00000240563L1TD19945.244ENSPEMG00000008068L1td19946.599Peromyscus_maniculatus_bairdii
ENSG00000240563L1TD110091.109ENSPPYG00000001286L1TD19991.109Pongo_abelii
ENSG00000240563L1TD19968.894ENSPCOG00000005879L1TD19970.298Propithecus_coquereli
ENSG00000240563L1TD110087.529ENSRBIG00000005782L1TD19987.774Rhinopithecus_bieti
ENSG00000240563L1TD110087.659ENSRROG00000042567L1TD19988.005Rhinopithecus_roxellana
ENSG00000240563L1TD17863.696ENSTBEG00000015274L1TD19948.092Tupaia_belangeri
ENSG00000240563L1TD19962.121ENSUAMG00000002306L1TD19960.950Ursus_americanus
ENSG00000240563L1TD19957.293ENSUMAG00000014924L1TD19958.460Ursus_maritimus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003727single-stranded RNA binding21873635.IBAFunction
GO:0032197transposition, RNA-mediated21873635.IBAProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent
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