Cancer | Chr | Position | Mutation Type | dbSNP | Protein-change | Allele Freq | RBD |
---|---|---|---|---|---|---|---|
ACC | |||||||
BLCA | |||||||
BLCA | |||||||
BLCA | |||||||
BRCA | |||||||
CESC | |||||||
CESC | |||||||
CESC | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
GBM | |||||||
GBM | |||||||
HNSC | |||||||
HNSC | |||||||
LAML | |||||||
LAML | |||||||
LIHC | |||||||
LUAD | |||||||
LUAD | |||||||
LUAD | |||||||
LUSC | |||||||
LUSC | |||||||
OV | |||||||
READ | |||||||
READ | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
THCA | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCS |
Cancer | Type | Freq | Q-value |
---|---|---|---|
PCPG | |||
THCA | |||
THYM |
Cancer | P-value | Q-value |
---|---|---|
THYM | ||
KIRC | ||
SARC | ||
MESO | ||
ACC | ||
SKCM | ||
LUSC | ||
BRCA | ||
ESCA | ||
COAD | ||
PAAD | ||
BLCA | ||
CESC | ||
LAML | ||
UCEC | ||
GBM | ||
OV |
Protein ID | Domain | Pfam ID | E-value | Domain number | Total number |
---|---|---|---|---|---|
ENSP00000355340 | APOBEC_N | PF08210.11 | 4.4e-58 | 1 | 1 |
ENSP00000355340 | APOBEC_C | PF05240.14 | 4.4e-32 | 1 | 1 |
Transcript ID | Name | Length | RefSeq ID | Protein ID | Length | RefSeq ID | UniportKB ID |
---|---|---|---|---|---|---|---|
ENST00000428892 | APOBEC3C-202 | 1056 | - | ENSP00000390855 | 61 (aa) | - | F8WB92 |
ENST00000361441 | APOBEC3C-201 | 2818 | XM_024452218 | ENSP00000355340 | 190 (aa) | XP_024307986 | Q9NRW3 |
Pathway ID | Pathway Name | Source |
---|---|---|
hsa05170 | Human immunodeficiency virus 1 infection | KEGG |
Ensembl ID | Gene Symbol | Coverage | Identiy | Paralog | Gene Symbol | Coverage | Identiy |
---|---|---|---|---|---|---|---|
ENSG00000244509 | APOBEC3C | 100 | 79.032 | ENSG00000128394 | APOBEC3F | 100 | 79.032 |
ENSG00000244509 | APOBEC3C | 100 | 52.105 | ENSG00000179750 | APOBEC3B | 98 | 52.105 |
ENSG00000244509 | APOBEC3C | 93 | 31.522 | ENSG00000124701 | APOBEC2 | 79 | 32.597 |
ENSG00000244509 | APOBEC3C | 71 | 40.288 | ENSG00000100298 | APOBEC3H | 74 | 41.045 |
ENSG00000244509 | APOBEC3C | 100 | 43.077 | ENSG00000239713 | APOBEC3G | 99 | 43.077 |
Ensembl ID | Gene Symbol | Coverage | Identiy | Ortholog | Gene Symbol | Coverage | Identiy | Species |
---|---|---|---|---|---|---|---|---|
ENSG00000244509 | APOBEC3C | 100 | 68.947 | ENSANAG00000030088 | - | 97 | 68.280 | Aotus_nancymaae |
ENSG00000244509 | APOBEC3C | 69 | 68.182 | ENSCJAG00000015317 | - | 100 | 68.182 | Callithrix_jacchus |
ENSG00000244509 | APOBEC3C | 98 | 47.368 | ENSCAFG00020002615 | - | 99 | 47.368 | Canis_lupus_dingo |
ENSG00000244509 | APOBEC3C | 96 | 49.727 | ENSTSYG00000030036 | - | 99 | 49.727 | Carlito_syrichta |
ENSG00000244509 | APOBEC3C | 100 | 52.381 | ENSTSYG00000034260 | - | 98 | 52.381 | Carlito_syrichta |
ENSG00000244509 | APOBEC3C | 96 | 53.005 | ENSTSYG00000028254 | - | 99 | 53.005 | Carlito_syrichta |
ENSG00000244509 | APOBEC3C | 98 | 67.742 | ENSCCAG00000030932 | - | 84 | 67.742 | Cebus_capucinus |
ENSG00000244509 | APOBEC3C | 100 | 82.632 | ENSCATG00000043226 | APOBEC3C | 100 | 82.632 | Cercocebus_atys |
ENSG00000244509 | APOBEC3C | 100 | 76.871 | ENSCATG00000033502 | - | 100 | 76.882 | Cercocebus_atys |
ENSG00000244509 | APOBEC3C | 100 | 83.158 | ENSCSAG00000006402 | APOBEC3C | 100 | 83.158 | Chlorocebus_sabaeus |
ENSG00000244509 | APOBEC3C | 100 | 75.806 | ENSCSAG00000006382 | APOBEC3F | 100 | 75.806 | Chlorocebus_sabaeus |
ENSG00000244509 | APOBEC3C | 100 | 77.957 | ENSCANG00000032904 | - | 100 | 77.957 | Colobus_angolensis_palliatus |
ENSG00000244509 | APOBEC3C | 100 | 82.632 | ENSCANG00000039177 | APOBEC3C | 100 | 82.632 | Colobus_angolensis_palliatus |
ENSG00000244509 | APOBEC3C | 100 | 71.505 | ENSCANG00000033269 | - | 99 | 73.370 | Colobus_angolensis_palliatus |
ENSG00000244509 | APOBEC3C | 100 | 73.656 | ENSCANG00000031957 | - | 100 | 73.656 | Colobus_angolensis_palliatus |
ENSG00000244509 | APOBEC3C | 97 | 40.323 | ENSDNOG00000044642 | - | 99 | 40.323 | Dasypus_novemcinctus |
ENSG00000244509 | APOBEC3C | 100 | 43.627 | ENSEASG00005018641 | - | 100 | 43.627 | Equus_asinus_asinus |
ENSG00000244509 | APOBEC3C | 98 | 47.849 | ENSECAG00000006071 | - | 100 | 47.849 | Equus_caballus |
ENSG00000244509 | APOBEC3C | 100 | 79.570 | ENSGGOG00000038678 | APOBEC3F | 100 | 79.570 | Gorilla_gorilla |
ENSG00000244509 | APOBEC3C | 100 | 87.368 | ENSGGOG00000036587 | - | 100 | 87.368 | Gorilla_gorilla |
ENSG00000244509 | APOBEC3C | 98 | 45.213 | ENSHGLG00000017315 | - | 85 | 43.316 | Heterocephalus_glaber_female |
ENSG00000244509 | APOBEC3C | 98 | 45.213 | ENSHGLG00100003105 | - | 94 | 45.213 | Heterocephalus_glaber_male |
ENSG00000244509 | APOBEC3C | 100 | 76.344 | ENSMFAG00000002331 | - | 100 | 76.344 | Macaca_fascicularis |
ENSG00000244509 | APOBEC3C | 100 | 74.731 | ENSMFAG00000004037 | APOBEC3F | 100 | 74.731 | Macaca_fascicularis |
ENSG00000244509 | APOBEC3C | 100 | 83.684 | ENSMFAG00000016792 | APOBEC3C | 100 | 83.684 | Macaca_fascicularis |
ENSG00000244509 | APOBEC3C | 100 | 77.419 | ENSMMUG00000004017 | APOBEC3F | 100 | 77.419 | Macaca_mulatta |
ENSG00000244509 | APOBEC3C | 97 | 84.783 | ENSMMUG00000004018 | APOBEC3C | 95 | 84.783 | Macaca_mulatta |
ENSG00000244509 | APOBEC3C | 100 | 76.344 | ENSMNEG00000043316 | APOBEC3D | 100 | 76.344 | Macaca_nemestrina |
ENSG00000244509 | APOBEC3C | 100 | 84.211 | ENSMNEG00000045196 | APOBEC3C | 100 | 84.211 | Macaca_nemestrina |
ENSG00000244509 | APOBEC3C | 100 | 82.632 | ENSMLEG00000036992 | APOBEC3C | 100 | 82.632 | Mandrillus_leucophaeus |
ENSG00000244509 | APOBEC3C | 100 | 75.269 | ENSMLEG00000029642 | APOBEC3F | 100 | 75.269 | Mandrillus_leucophaeus |
ENSG00000244509 | APOBEC3C | 99 | 53.723 | ENSMICG00000042615 | - | 89 | 53.723 | Microcebus_murinus |
ENSG00000244509 | APOBEC3C | 97 | 45.550 | ENSMLUG00000023676 | - | 99 | 45.550 | Myotis_lucifugus |
ENSG00000244509 | APOBEC3C | 100 | 64.211 | ENSNLEG00000035811 | - | 100 | 64.211 | Nomascus_leucogenys |
ENSG00000244509 | APOBEC3C | 100 | 82.105 | ENSNLEG00000028392 | APOBEC3C | 100 | 82.105 | Nomascus_leucogenys |
ENSG00000244509 | APOBEC3C | 98 | 45.251 | ENSOGAG00000033404 | - | 100 | 45.251 | Otolemur_garnettii |
ENSG00000244509 | APOBEC3C | 98 | 48.663 | ENSOGAG00000032498 | - | 99 | 48.663 | Otolemur_garnettii |
ENSG00000244509 | APOBEC3C | 98 | 42.781 | ENSOGAG00000030300 | - | 97 | 42.781 | Otolemur_garnettii |
ENSG00000244509 | APOBEC3C | 100 | 97.895 | ENSPPAG00000014118 | APOBEC3C | 100 | 97.895 | Pan_paniscus |
ENSG00000244509 | APOBEC3C | 100 | 77.368 | ENSPPAG00000028218 | - | 100 | 77.368 | Pan_paniscus |
ENSG00000244509 | APOBEC3C | 97 | 48.404 | ENSPPRG00000003726 | - | 98 | 48.404 | Panthera_pardus |
ENSG00000244509 | APOBEC3C | 100 | 78.495 | ENSPTRG00000014385 | APOBEC3C | 100 | 78.495 | Pan_troglodytes |
ENSG00000244509 | APOBEC3C | 100 | 77.368 | ENSPTRG00000041588 | APOBEC3D | 100 | 77.368 | Pan_troglodytes |
ENSG00000244509 | APOBEC3C | 100 | 82.105 | ENSPANG00000010775 | APOBEC3F | 100 | 82.105 | Papio_anubis |
ENSG00000244509 | APOBEC3C | 100 | 85.263 | ENSPPYG00000011832 | APOBEC3C | 100 | 85.263 | Pongo_abelii |
ENSG00000244509 | APOBEC3C | 67 | 57.031 | ENSPCOG00000022067 | - | 97 | 57.031 | Propithecus_coquereli |
ENSG00000244509 | APOBEC3C | 66 | 57.143 | ENSPCOG00000018072 | - | 95 | 57.143 | Propithecus_coquereli |
ENSG00000244509 | APOBEC3C | 64 | 50.000 | ENSPVAG00000009461 | - | 50 | 50.000 | Pteropus_vampyrus |
ENSG00000244509 | APOBEC3C | 100 | 75.556 | ENSRBIG00000042297 | - | 99 | 77.707 | Rhinopithecus_bieti |
ENSG00000244509 | APOBEC3C | 100 | 82.105 | ENSRBIG00000030323 | - | 100 | 82.105 | Rhinopithecus_bieti |
ENSG00000244509 | APOBEC3C | 100 | 76.344 | ENSRBIG00000030834 | - | 100 | 76.344 | Rhinopithecus_bieti |
ENSG00000244509 | APOBEC3C | 100 | 75.000 | ENSRROG00000029996 | - | 100 | 75.000 | Rhinopithecus_roxellana |
ENSG00000244509 | APOBEC3C | 100 | 82.105 | ENSRROG00000029045 | APOBEC3C | 100 | 82.105 | Rhinopithecus_roxellana |
ENSG00000244509 | APOBEC3C | 100 | 75.806 | ENSRROG00000028557 | - | 100 | 75.806 | Rhinopithecus_roxellana |
ENSG00000244509 | APOBEC3C | 100 | 69.474 | ENSSBOG00000032780 | - | 100 | 69.474 | Saimiri_boliviensis_boliviensis |
ENSG00000244509 | APOBEC3C | 85 | 49.068 | ENSUAMG00000004433 | - | 89 | 49.068 | Ursus_americanus |
ENSG00000244509 | APOBEC3C | 86 | 50.000 | ENSUMAG00000014441 | - | 76 | 50.000 | Ursus_maritimus |
ENSG00000244509 | APOBEC3C | 77 | 51.007 | ENSVVUG00000014628 | - | 91 | 50.685 | Vulpes_vulpes |
Go ID | Go_term | PubmedID | Evidence | Category |
---|---|---|---|---|
GO:0000932 | P-body | 21873635. | IBA | Component |
GO:0003723 | RNA binding | 22658674.22681889. | HDA | Function |
GO:0003723 | RNA binding | 21873635. | IBA | Function |
GO:0004126 | cytidine deaminase activity | 21873635. | IBA | Function |
GO:0005515 | protein binding | 22915799.25416956. | IPI | Function |
GO:0005634 | nucleus | 21873635. | IBA | Component |
GO:0005634 | nucleus | 21835787. | IDA | Component |
GO:0005737 | cytoplasm | 21873635. | IBA | Component |
GO:0005737 | cytoplasm | 21835787. | IDA | Component |
GO:0008270 | zinc ion binding | - | IEA | Function |
GO:0009972 | cytidine deamination | 21632763. | IDA | Process |
GO:0010529 | negative regulation of transposition | 21873635. | IBA | Process |
GO:0010529 | negative regulation of transposition | 16527742.20062055. | IDA | Process |
GO:0016032 | viral process | - | IEA | Process |
GO:0016554 | cytidine to uridine editing | 21873635. | IBA | Process |
GO:0045071 | negative regulation of viral genome replication | 21632763. | IDA | Process |
GO:0045087 | innate immune response | - | IEA | Process |
GO:0045869 | negative regulation of single stranded viral RNA replication via double stranded DNA intermediate | 21873635. | IBA | Process |
GO:0051607 | defense response to virus | 21873635. | IBA | Process |
GO:0070383 | DNA cytosine deamination | 21873635. | IBA | Process |
GO:0080111 | DNA demethylation | 21873635. | IBA | Process |
GO:0080111 | DNA demethylation | 21496894. | IDA | Process |