Cancer | Chr | Position | Mutation Type | dbSNP | Protein-change | Allele Freq | RBD |
---|---|---|---|---|---|---|---|
ACC | |||||||
BRCA | |||||||
BRCA | |||||||
BRCA | |||||||
BRCA | |||||||
BRCA | |||||||
BRCA | |||||||
BRCA | |||||||
BRCA | |||||||
CESC | |||||||
CESC | |||||||
CESC | |||||||
CESC | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
ESCA | |||||||
ESCA | |||||||
HNSC | |||||||
KIRC | |||||||
KIRP | |||||||
LIHC | |||||||
LIHC | |||||||
LIHC | |||||||
LIHC | |||||||
LIHC | |||||||
LIHC | |||||||
LIHC | |||||||
LUSC | |||||||
READ | |||||||
READ | |||||||
SARC | |||||||
SARC | |||||||
SARC | |||||||
SARC | |||||||
SARC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC |
Cancer | Type | Freq | Q-value |
---|---|---|---|
ACC | |||
LUAD | |||
MESO |
Cancer | P-value | Q-value |
---|---|---|
KIRC | ||
STAD | ||
SARC | ||
MESO | ||
UCS | ||
HNSC | ||
BLCA | ||
CESC | ||
LAML | ||
UVM |
Protein ID | Domain | Pfam ID | E-value | Domain number | Total number |
---|---|---|---|---|---|
ENSP00000463233 | RRM_5 | PF13893.6 | 3.6e-14 | 1 | 3 |
ENSP00000463233 | RRM_5 | PF13893.6 | 3.6e-14 | 2 | 3 |
ENSP00000463233 | RRM_5 | PF13893.6 | 3.6e-14 | 3 | 3 |
ENSP00000463233 | RRM_1 | PF00076.22 | 7.1e-85 | 1 | 4 |
ENSP00000463233 | RRM_1 | PF00076.22 | 7.1e-85 | 2 | 4 |
ENSP00000463233 | RRM_1 | PF00076.22 | 7.1e-85 | 3 | 4 |
ENSP00000463233 | RRM_1 | PF00076.22 | 7.1e-85 | 4 | 4 |
Transcript ID | Name | Length | RefSeq ID | Protein ID | Length | RefSeq ID | UniportKB ID |
---|---|---|---|---|---|---|---|
ENST00000421491 | PABPC4L-201 | 4944 | XM_017007727 | ENSP00000463233 | 370 (aa) | - | P0CB38 |
Ensembl ID | Gene Symbol | Coverage | Identiy | Paralog | Gene Symbol | Coverage | Identiy |
---|---|---|---|---|---|---|---|
ENSG00000254535 | PABPC4L | 50 | 34.722 | ENSG00000149187 | CELF1 | 83 | 34.586 |
ENSG00000254535 | PABPC4L | 94 | 30.178 | ENSG00000107105 | ELAVL2 | 99 | 30.337 |
ENSG00000254535 | PABPC4L | 95 | 33.613 | ENSG00000151923 | TIAL1 | 98 | 33.613 |
ENSG00000254535 | PABPC4L | 71 | 30.726 | ENSG00000135486 | HNRNPA1 | 93 | 32.743 |
ENSG00000254535 | PABPC4L | 97 | 31.361 | ENSG00000116001 | TIA1 | 90 | 33.094 |
ENSG00000254535 | PABPC4L | 98 | 63.265 | ENSG00000186288 | PABPC1L2A | 98 | 63.265 |
ENSG00000254535 | PABPC4L | 98 | 61.798 | ENSG00000174740 | PABPC5 | 99 | 59.624 |
ENSG00000254535 | PABPC4L | 99 | 72.162 | ENSG00000070756 | PABPC1 | 99 | 73.832 |
ENSG00000254535 | PABPC4L | 96 | 36.111 | ENSG00000100461 | RBM23 | 64 | 36.111 |
ENSG00000254535 | PABPC4L | 98 | 63.265 | ENSG00000184388 | PABPC1L2B | 98 | 63.265 |
ENSG00000254535 | PABPC4L | 97 | 42.105 | ENSG00000143368 | SF3B4 | 78 | 42.105 |
ENSG00000254535 | PABPC4L | 99 | 75.405 | ENSG00000090621 | PABPC4 | 100 | 76.744 |
ENSG00000254535 | PABPC4L | 86 | 31.707 | ENSG00000066044 | ELAVL1 | 82 | 31.707 |
ENSG00000254535 | PABPC4L | 97 | 31.395 | ENSG00000179950 | PUF60 | 62 | 33.333 |
ENSG00000254535 | PABPC4L | 99 | 63.514 | ENSG00000101104 | PABPC1L | 98 | 61.728 |
ENSG00000254535 | PABPC4L | 62 | 37.349 | ENSG00000099622 | CIRBP | 98 | 37.179 |
ENSG00000254535 | PABPC4L | 91 | 30.345 | ENSG00000121390 | PSPC1 | 53 | 30.345 |
ENSG00000254535 | PABPC4L | 95 | 37.500 | ENSG00000131051 | RBM39 | 90 | 37.500 |
ENSG00000254535 | PABPC4L | 99 | 67.838 | ENSG00000151846 | PABPC3 | 61 | 67.838 |
ENSG00000254535 | PABPC4L | 82 | 40.789 | ENSG00000102317 | RBM3 | 58 | 40.789 |
Ensembl ID | Gene Symbol | Coverage | Identiy | Ortholog | Gene Symbol | Coverage | Identiy | Species |
---|---|---|---|---|---|---|---|---|
ENSG00000254535 | PABPC4L | 100 | 97.027 | ENSANAG00000017199 | PABPC4L | 87 | 97.027 | Aotus_nancymaae |
ENSG00000254535 | PABPC4L | 99 | 89.702 | ENSBTAG00000046902 | PABPC4L | 99 | 89.702 | Bos_taurus |
ENSG00000254535 | PABPC4L | 100 | 97.297 | ENSCJAG00000045332 | PABPC4L | 86 | 97.297 | Callithrix_jacchus |
ENSG00000254535 | PABPC4L | 99 | 73.913 | ENSCAFG00020019182 | - | 54 | 73.913 | Canis_lupus_dingo |
ENSG00000254535 | PABPC4L | 99 | 89.702 | ENSCHIG00000007231 | PABPC4L | 99 | 89.702 | Capra_hircus |
ENSG00000254535 | PABPC4L | 98 | 80.896 | ENSCAPG00000000555 | PABPC4L | 100 | 80.896 | Cavia_aperea |
ENSG00000254535 | PABPC4L | 100 | 78.378 | ENSCPOG00000033167 | PABPC4L | 100 | 78.378 | Cavia_porcellus |
ENSG00000254535 | PABPC4L | 100 | 97.297 | ENSCCAG00000031681 | PABPC4L | 86 | 97.297 | Cebus_capucinus |
ENSG00000254535 | PABPC4L | 100 | 83.784 | ENSCLAG00000017628 | PABPC4L | 100 | 83.784 | Chinchilla_lanigera |
ENSG00000254535 | PABPC4L | 100 | 97.027 | ENSCANG00000037677 | PABPC4L | 100 | 97.027 | Colobus_angolensis_palliatus |
ENSG00000254535 | PABPC4L | 100 | 82.973 | ENSCGRG00001002070 | Pabpc4l | 100 | 82.973 | Cricetulus_griseus_chok1gshd |
ENSG00000254535 | PABPC4L | 100 | 82.973 | ENSCGRG00000020086 | Pabpc4l | 100 | 82.973 | Cricetulus_griseus_crigri |
ENSG00000254535 | PABPC4L | 100 | 92.162 | ENSDNOG00000031077 | PABPC4L | 95 | 92.162 | Dasypus_novemcinctus |
ENSG00000254535 | PABPC4L | 99 | 89.702 | ENSEASG00005007883 | PABPC4L | 99 | 89.702 | Equus_asinus_asinus |
ENSG00000254535 | PABPC4L | 99 | 89.973 | ENSECAG00000031416 | PABPC4L | 99 | 89.973 | Equus_caballus |
ENSG00000254535 | PABPC4L | 99 | 90.244 | ENSFCAG00000028270 | PABPC4L | 99 | 90.244 | Felis_catus |
ENSG00000254535 | PABPC4L | 99 | 83.740 | ENSFDAG00000019606 | PABPC4L | 99 | 83.740 | Fukomys_damarensis |
ENSG00000254535 | PABPC4L | 100 | 99.459 | ENSGGOG00000024991 | PABPC4L | 100 | 99.459 | Gorilla_gorilla |
ENSG00000254535 | PABPC4L | 99 | 84.011 | ENSHGLG00000020104 | PABPC4L | 99 | 84.011 | Heterocephalus_glaber_female |
ENSG00000254535 | PABPC4L | 99 | 84.011 | ENSHGLG00100020648 | PABPC4L | 99 | 84.011 | Heterocephalus_glaber_male |
ENSG00000254535 | PABPC4L | 100 | 87.601 | ENSSTOG00000019472 | PABPC4L | 99 | 87.601 | Ictidomys_tridecemlineatus |
ENSG00000254535 | PABPC4L | 99 | 82.927 | ENSJJAG00000004090 | Pabpc4l | 99 | 82.927 | Jaculus_jaculus |
ENSG00000254535 | PABPC4L | 100 | 83.243 | ENSMAUG00000016313 | Pabpc4l | 100 | 83.243 | Mesocricetus_auratus |
ENSG00000254535 | PABPC4L | 100 | 95.135 | ENSMICG00000029683 | PABPC4L | 100 | 95.135 | Microcebus_murinus |
ENSG00000254535 | PABPC4L | 100 | 84.324 | ENSMOCG00000007551 | Pabpc4l | 100 | 84.324 | Microtus_ochrogaster |
ENSG00000254535 | PABPC4L | 100 | 81.081 | MGP_CAROLIEiJ_G0024968 | Pabpc4l | 100 | 81.081 | Mus_caroli |
ENSG00000254535 | PABPC4L | 100 | 81.351 | ENSMUSG00000090919 | Pabpc4l | 100 | 81.351 | Mus_musculus |
ENSG00000254535 | PABPC4L | 100 | 81.622 | MGP_PahariEiJ_G0026409 | Pabpc4l | 100 | 81.622 | Mus_pahari |
ENSG00000254535 | PABPC4L | 100 | 80.811 | MGP_SPRETEiJ_G0025903 | Pabpc4l | 100 | 80.811 | Mus_spretus |
ENSG00000254535 | PABPC4L | 99 | 78.862 | ENSMLUG00000008254 | PABPC4L | 99 | 78.862 | Myotis_lucifugus |
ENSG00000254535 | PABPC4L | 100 | 87.568 | ENSNGAG00000001502 | Pabpc4l | 100 | 87.568 | Nannospalax_galili |
ENSG00000254535 | PABPC4L | 100 | 99.459 | ENSNLEG00000019300 | PABPC4L | 100 | 99.459 | Nomascus_leucogenys |
ENSG00000254535 | PABPC4L | 100 | 87.568 | ENSOGAG00000026166 | PABPC4L | 100 | 87.568 | Otolemur_garnettii |
ENSG00000254535 | PABPC4L | 99 | 99.690 | ENSPPAG00000043745 | PABPC4L | 93 | 99.690 | Pan_paniscus |
ENSG00000254535 | PABPC4L | 99 | 89.702 | ENSPPRG00000018628 | PABPC4L | 99 | 89.702 | Panthera_pardus |
ENSG00000254535 | PABPC4L | 99 | 90.244 | ENSPTIG00000010106 | PABPC4L | 99 | 90.244 | Panthera_tigris_altaica |
ENSG00000254535 | PABPC4L | 99 | 99.690 | ENSPTRG00000045513 | - | 78 | 99.690 | Pan_troglodytes |
ENSG00000254535 | PABPC4L | 100 | 83.243 | ENSPEMG00000012565 | Pabpc4l | 100 | 83.243 | Peromyscus_maniculatus_bairdii |
ENSG00000254535 | PABPC4L | 100 | 95.135 | ENSPCOG00000025578 | PABPC4L | 100 | 95.135 | Propithecus_coquereli |
ENSG00000254535 | PABPC4L | 100 | 81.892 | ENSRNOG00000029749 | Pabpc4l | 100 | 81.892 | Rattus_norvegicus |
ENSG00000254535 | PABPC4L | 100 | 95.946 | ENSRBIG00000030229 | PABPC4L | 100 | 95.946 | Rhinopithecus_bieti |
ENSG00000254535 | PABPC4L | 100 | 95.676 | ENSRROG00000020367 | PABPC4L | 100 | 95.676 | Rhinopithecus_roxellana |
ENSG00000254535 | PABPC4L | 100 | 95.135 | ENSSBOG00000016382 | PABPC4L | 100 | 95.135 | Saimiri_boliviensis_boliviensis |
ENSG00000254535 | PABPC4L | 99 | 84.282 | ENSSSCG00000009067 | PABPC4L | 99 | 84.282 | Sus_scrofa |
ENSG00000254535 | PABPC4L | 99 | 89.431 | ENSUAMG00000001289 | PABPC4L | 99 | 89.431 | Ursus_americanus |
ENSG00000254535 | PABPC4L | 99 | 89.431 | ENSUMAG00000014887 | PABPC4L | 99 | 89.431 | Ursus_maritimus |
ENSG00000254535 | PABPC4L | 87 | 76.074 | ENSVVUG00000011060 | - | 74 | 76.074 | Vulpes_vulpes |
Go ID | Go_term | PubmedID | Evidence | Category |
---|---|---|---|---|
GO:0003723 | RNA binding | 21873635. | IBA | Function |
GO:0003730 | mRNA 3'-UTR binding | 21873635. | IBA | Function |
GO:0005634 | nucleus | 21873635. | IBA | Component |
GO:0005737 | cytoplasm | 21873635. | IBA | Component |
GO:0005829 | cytosol | 21873635. | IBA | Component |
GO:0008143 | poly(A) binding | 21873635. | IBA | Function |
GO:0008266 | poly(U) RNA binding | 21873635. | IBA | Function |
GO:0010494 | cytoplasmic stress granule | 21873635. | IBA | Component |
GO:1990904 | ribonucleoprotein complex | 21873635. | IBA | Component |