EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
LGGchr1781707021Missense_MutationNAQ154R0.14Ribosomal_L12
PRADchr17817073643'UTRnovel0.67
SKCMchr1781707034Silentrs762149015L158L0.33
SKCMchr17817073763'UTRnovel0.55
STADchr1781707225Silentrs201467196T194T0.21
UCECchr1781707034Silentrs762149015L158L0.42

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCAAMP0.38730.00012456
CESCDEL0.10850.00067839
KIRPAMP0.67010.14801
LGGAMP0.07211.52e-05
SARCAMP0.20230.032181
SKCMAMP0.28347.0388e-08
THCADEL0.0020.221
UVMAMP0.16250.054583

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

MESO0.05

Kaplan-Meier Survival Analysis

ACC0.027

Kaplan-Meier Survival Analysis

SKCM0.0042

Kaplan-Meier Survival Analysis

ESCA0.026

Kaplan-Meier Survival Analysis

COAD0.03

Kaplan-Meier Survival Analysis

CESC0.031

Kaplan-Meier Survival Analysis

LIHC0.0066

Kaplan-Meier Survival Analysis

LUAD0.0045

Kaplan-Meier Survival Analysis

UVM0.00066

Kaplan-Meier Survival Analysis

OV0.018

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000262814 (Gene tree)
Gene ID
6182
Gene Symbol
MRPL12
Alias
MRPL7/L12|MRPL7|RPML12
Full Name
mitochondrial ribosomal protein L12
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
4,170 bases
Position
chr17:81,703,357-81,707,526
Accession
10378
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein which forms homodimers. In prokaryotic ribosomes, two L7/L12 dimers and one L10 protein form the L8 protein complex. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000333837Ribosomal_L12PF00542.191.4e-1711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000333676MRPL12-2011028-ENSP00000333837198 (aa)-P52815
Gene Model
Click here to download ENSG00000262814's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000262814rs733541451781706393?Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes28736931unit increase0.018GO_1903491|EFO_0001360|EFO_0007806|GO_1901557
ENSG00000262814rs733541451781706393?LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes28736931unit increase0.032EFO_0007804|GO_1903491|EFO_0001360|GO_1901557
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000262814's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000262814MRPL129466.492ENSAPOG00000005018mrpl129368.023Acanthochromis_polyacanthus
ENSG00000262814MRPL129760.309ENSACIG00000006182mrpl129066.071Amphilophus_citrinellus
ENSG00000262814MRPL129464.921ENSAOCG00000003859mrpl128767.442Amphiprion_ocellaris
ENSG00000262814MRPL129464.921ENSAPEG00000005897mrpl128767.442Amphiprion_percula
ENSG00000262814MRPL129761.538ENSATEG00000023948mrpl129760.417Anabas_testudineus
ENSG00000262814MRPL128668.824ENSACAG00000010743MRPL127667.647Anolis_carolinensis
ENSG00000262814MRPL1210091.414ENSANAG00000037237-10090.404Aotus_nancymaae
ENSG00000262814MRPL1210087.940ENSANAG00000020985-10087.940Aotus_nancymaae
ENSG00000262814MRPL128865.517ENSACLG00000022963mrpl128766.279Astatotilapia_calliptera
ENSG00000262814MRPL128667.647ENSAMXG00000032543mrpl128767.647Astyanax_mexicanus
ENSG00000262814MRPL1210085.859ENSBTAG00000000417MRPL1210085.859Bos_taurus
ENSG00000262814MRPL127343.448WBGene00012361mrpl-128043.448Caenorhabditis_elegans
ENSG00000262814MRPL1210092.424ENSCJAG00000001652MRPL1210092.424Callithrix_jacchus
ENSG00000262814MRPL1210085.859ENSCHIG00000027210MRPL1210085.859Capra_hircus
ENSG00000262814MRPL1210087.374ENSTSYG00000009746MRPL1210087.374Carlito_syrichta
ENSG00000262814MRPL1210085.427ENSCPOG00000035389MRPL1210085.427Cavia_porcellus
ENSG00000262814MRPL1210092.929ENSCCAG00000026887MRPL1210092.929Cebus_capucinus
ENSG00000262814MRPL1210095.455ENSCATG00000045041MRPL1210095.455Cercocebus_atys
ENSG00000262814MRPL1210083.920ENSCLAG00000012764MRPL1210083.920Chinchilla_lanigera
ENSG00000262814MRPL1210096.465ENSCSAG00000002234MRPL1210096.465Chlorocebus_sabaeus
ENSG00000262814MRPL1210070.352ENSCPBG00000011476MRPL1210071.357Chrysemys_picta_bellii
ENSG00000262814MRPL128841.489ENSCING00000012945-9444.751Ciona_intestinalis
ENSG00000262814MRPL1210097.475ENSCANG00000029130MRPL1210097.475Colobus_angolensis_palliatus
ENSG00000262814MRPL129683.938ENSCGRG00001005393Mrpl1210084.314Cricetulus_griseus_chok1gshd
ENSG00000262814MRPL129682.902ENSCGRG00000015907Mrpl1210082.353Cricetulus_griseus_crigri
ENSG00000262814MRPL129463.542ENSCSEG00000009238mrpl128667.251Cynoglossus_semilaevis
ENSG00000262814MRPL128867.816ENSCVAG00000008710mrpl128766.860Cyprinodon_variegatus
ENSG00000262814MRPL129360.417ENSDARG00000038768mrpl128861.047Danio_rerio
ENSG00000262814MRPL1210081.818ENSDNOG00000042484MRPL1210081.818Dasypus_novemcinctus
ENSG00000262814MRPL1210085.427ENSDORG00000008074Mrpl1210087.940Dipodomys_ordii
ENSG00000262814MRPL128935.165FBgn0011787mRpL127338.686Drosophila_melanogaster
ENSG00000262814MRPL1210084.925ENSEASG00005005780MRPL1210086.432Equus_asinus_asinus
ENSG00000262814MRPL1210084.925ENSECAG00000009323MRPL1210086.432Equus_caballus
ENSG00000262814MRPL1210080.303ENSEEUG00000015613MRPL1210080.303Erinaceus_europaeus
ENSG00000262814MRPL129161.290ENSELUG00000010073mrpl128863.953Esox_lucius
ENSG00000262814MRPL128784.483ENSFDAG00000014977MRPL129986.127Fukomys_damarensis
ENSG00000262814MRPL128867.816ENSFHEG00000014518mrpl129268.605Fundulus_heteroclitus
ENSG00000262814MRPL128764.162ENSGMOG00000008213mrpl128662.791Gadus_morhua
ENSG00000262814MRPL128964.641ENSGALG00000045753MRPL128369.620Gallus_gallus
ENSG00000262814MRPL129463.874ENSGAFG00000003529mrpl128067.442Gambusia_affinis
ENSG00000262814MRPL129857.732ENSGACG00000010541mrpl129757.732Gasterosteus_aculeatus
ENSG00000262814MRPL1210074.372ENSGAGG00000013180MRPL1210074.372Gopherus_agassizii
ENSG00000262814MRPL1210098.990ENSGGOG00000009356MRPL1210098.990Gorilla_gorilla
ENSG00000262814MRPL129463.158ENSHBUG00000004986mrpl129659.574Haplochromis_burtoni
ENSG00000262814MRPL1210083.920ENSHGLG00000009470MRPL129984.925Heterocephalus_glaber_female
ENSG00000262814MRPL129782.383ENSHGLG00100005034MRPL129781.250Heterocephalus_glaber_male
ENSG00000262814MRPL129264.324ENSHCOG00000018775mrpl128865.698Hippocampus_comes
ENSG00000262814MRPL128668.235ENSIPUG00000007392Mrpl128768.235Ictalurus_punctatus
ENSG00000262814MRPL1210086.935ENSSTOG00000031761MRPL1210087.437Ictidomys_tridecemlineatus
ENSG00000262814MRPL1210085.075ENSJJAG00000018729Mrpl1210084.080Jaculus_jaculus
ENSG00000262814MRPL129562.371ENSKMAG00000012978mrpl128763.953Kryptolebias_marmoratus
ENSG00000262814MRPL129463.874ENSLBEG00000024610mrpl128764.000Labrus_bergylta
ENSG00000262814MRPL1210085.427ENSLAFG00000004594MRPL1210086.500Loxodonta_africana
ENSG00000262814MRPL1210095.960ENSMFAG00000042253MRPL1210095.960Macaca_fascicularis
ENSG00000262814MRPL1210095.960ENSMNEG00000016503MRPL1210095.960Macaca_nemestrina
ENSG00000262814MRPL1210094.949ENSMLEG00000041715MRPL1210094.949Mandrillus_leucophaeus
ENSG00000262814MRPL128667.251ENSMAMG00000020677mrpl128766.279Mastacembelus_armatus
ENSG00000262814MRPL128865.517ENSMZEG00005021473mrpl128766.279Maylandia_zebra
ENSG00000262814MRPL128865.517ENSMZEG00005011802mrpl128766.279Maylandia_zebra
ENSG00000262814MRPL1210085.354ENSMAUG00000002006Mrpl1210083.333Mesocricetus_auratus
ENSG00000262814MRPL1210087.374ENSMICG00000047418MRPL1210089.394Microcebus_murinus
ENSG00000262814MRPL1210084.080ENSMOCG00000019919Mrpl1210085.572Microtus_ochrogaster
ENSG00000262814MRPL129562.434ENSMMOG00000011266mrpl128665.294Mola_mola
ENSG00000262814MRPL1210076.768ENSMODG00000002902MRPL1210077.778Monodelphis_domestica
ENSG00000262814MRPL129463.874ENSMALG00000001391mrpl128764.535Monopterus_albus
ENSG00000262814MRPL1210084.577MGP_CAROLIEiJ_G0017522Mrpl1210084.080Mus_caroli
ENSG00000262814MRPL1210084.080ENSMUSG00000039640Mrpl1210083.582Mus_musculus
ENSG00000262814MRPL1210084.577MGP_PahariEiJ_G0018648Mrpl1210084.080Mus_pahari
ENSG00000262814MRPL1210084.080MGP_SPRETEiJ_G0018366Mrpl1210083.582Mus_spretus
ENSG00000262814MRPL1210082.759ENSNGAG00000010189Mrpl1210083.744Nannospalax_galili
ENSG00000262814MRPL129462.827ENSNBRG00000020817mrpl128866.279Neolamprologus_brichardi
ENSG00000262814MRPL1210098.485ENSNLEG00000035133MRPL1210098.485Nomascus_leucogenys
ENSG00000262814MRPL128569.412ENSMEUG00000010783-10070.000Notamacropus_eugenii
ENSG00000262814MRPL1210082.915ENSODEG00000008765MRPL1210081.407Octodon_degus
ENSG00000262814MRPL126733.333ENSOANG00000021537-10031.690Ornithorhynchus_anatinus
ENSG00000262814MRPL129466.321ENSORLG00000007092mrpl128668.023Oryzias_latipes
ENSG00000262814MRPL129466.321ENSORLG00020001351mrpl128668.023Oryzias_latipes_hni
ENSG00000262814MRPL129466.839ENSORLG00015012065mrpl128668.605Oryzias_latipes_hsok
ENSG00000262814MRPL129367.196ENSOMEG00000006871mrpl128668.605Oryzias_melastigma
ENSG00000262814MRPL1210085.075ENSOGAG00000005297MRPL1210084.577Otolemur_garnettii
ENSG00000262814MRPL129885.128ENSOARG00000018221MRPL128785.128Ovis_aries
ENSG00000262814MRPL1210099.495ENSPPAG00000042009MRPL1210099.495Pan_paniscus
ENSG00000262814MRPL1210086.364ENSPPRG00000002570MRPL1210086.364Panthera_pardus
ENSG00000262814MRPL129284.153ENSPTIG00000019530MRPL128788.372Panthera_tigris_altaica
ENSG00000262814MRPL1210099.495ENSPTRG00000043438MRPL1210099.495Pan_troglodytes
ENSG00000262814MRPL1210095.960ENSPANG00000019331MRPL1210095.960Papio_anubis
ENSG00000262814MRPL129263.298ENSPKIG00000012772mrpl128663.690Paramormyrops_kingsleyae
ENSG00000262814MRPL128568.966ENSPSIG00000018211MRPL128768.966Pelodiscus_sinensis
ENSG00000262814MRPL129565.957ENSPMGG00000008509mrpl128767.442Periophthalmus_magnuspinnatus
ENSG00000262814MRPL1210086.000ENSPEMG00000005848Mrpl1210084.000Peromyscus_maniculatus_bairdii
ENSG00000262814MRPL128957.778ENSPMAG00000001357mrpl127760.366Petromyzon_marinus
ENSG00000262814MRPL1210078.000ENSPCIG00000029585MRPL1210078.000Phascolarctos_cinereus
ENSG00000262814MRPL129465.969ENSPFOG00000024338mrpl128169.186Poecilia_formosa
ENSG00000262814MRPL129465.969ENSPLAG00000002664mrpl128769.186Poecilia_latipinna
ENSG00000262814MRPL129367.027ENSPMEG00000021484mrpl129265.789Poecilia_mexicana
ENSG00000262814MRPL128866.092ENSPREG00000004225mrpl129266.279Poecilia_reticulata
ENSG00000262814MRPL1210097.475ENSPPYG00000008744MRPL1210097.475Pongo_abelii
ENSG00000262814MRPL1210071.357ENSPCAG00000015148MRPL1210071.357Procavia_capensis
ENSG00000262814MRPL1210091.919ENSPCOG00000016998MRPL1210091.919Propithecus_coquereli
ENSG00000262814MRPL1210085.354ENSPVAG00000011002MRPL1210085.354Pteropus_vampyrus
ENSG00000262814MRPL129264.674ENSPNYG00000008879mrpl128765.680Pundamilia_nyererei
ENSG00000262814MRPL128665.882ENSPNAG00000003320mrpl128769.412Pygocentrus_nattereri
ENSG00000262814MRPL129681.250ENSRNOG00000036695Mrpl127480.788Rattus_norvegicus
ENSG00000262814MRPL1210095.960ENSRBIG00000029573MRPL1210095.960Rhinopithecus_bieti
ENSG00000262814MRPL1210095.960ENSRROG00000010180MRPL1210095.960Rhinopithecus_roxellana
ENSG00000262814MRPL126944.521YGL068W-7442.384Saccharomyces_cerevisiae
ENSG00000262814MRPL128892.000ENSSBOG00000033734MRPL129092.442Saimiri_boliviensis_boliviensis
ENSG00000262814MRPL128663.743ENSSFOG00015023051mrpl128561.538Scleropages_formosus
ENSG00000262814MRPL129660.714ENSSFOG00015023998mrpl128665.476Scleropages_formosus
ENSG00000262814MRPL129466.492ENSSMAG00000001700mrpl128766.860Scophthalmus_maximus
ENSG00000262814MRPL129567.021ENSSDUG00000014547mrpl129068.605Seriola_dumerili
ENSG00000262814MRPL129467.539ENSSLDG00000003829mrpl128766.860Seriola_lalandi_dorsalis
ENSG00000262814MRPL129268.852ENSSPUG00000011062MRPL129167.442Sphenodon_punctatus
ENSG00000262814MRPL129466.492ENSSPAG00000010692mrpl128768.023Stegastes_partitus
ENSG00000262814MRPL1210084.343ENSSSCG00000033148MRPL1210084.343Sus_scrofa
ENSG00000262814MRPL127958.025ENSTGUG00000003446MRPL1210056.962Taeniopygia_guttata
ENSG00000262814MRPL128864.943ENSTRUG00000021764mrpl126867.442Takifugu_rubripes
ENSG00000262814MRPL129463.351ENSTNIG00000010438mrpl128266.860Tetraodon_nigroviridis
ENSG00000262814MRPL1210081.313ENSTBEG00000010871MRPL1210081.313Tupaia_belangeri
ENSG00000262814MRPL1210085.354ENSTTRG00000007611MRPL1210085.354Tursiops_truncatus
ENSG00000262814MRPL1210069.421ENSUAMG00000016771MRPL1210069.421Ursus_americanus
ENSG00000262814MRPL128884.659ENSUMAG00000016332MRPL127286.127Ursus_maritimus
ENSG00000262814MRPL1210086.869ENSVVUG00000020000MRPL1210086.869Vulpes_vulpes
ENSG00000262814MRPL129465.969ENSXMAG00000028444mrpl128769.767Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding8626705.TASFunction
GO:0003735structural constituent of ribosome-IEAFunction
GO:0005515protein binding17337445.19103604.22003127.IPIFunction
GO:0005739mitochondrion17337445.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005762mitochondrial large ribosomal subunit21873635.IBAComponent
GO:0005762mitochondrial large ribosomal subunit20186120.IDAComponent
GO:0006390mitochondrial transcription21873635.IBAProcess
GO:0006390mitochondrial transcription17337445.IDAProcess
GO:0045893positive regulation of transcription, DNA-templated17337445.IDAProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess
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