EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1735930128Missense_MutationnovelR75T0.39RRM_1
BLCAchr1735924638SilentnovelG178G0.91
BLCAchr1735924713Silentrs373207074P153P0.28
BRCAchr1735922586Missense_MutationnovelV220F0.13
CESCchr1735930643Missense_MutationnovelE29K0.2
CESCchr1735924733Missense_MutationnovelD147H0.28
CESCchr1735925518Silentrs765443073I132I0.3
CHOLchr1735918398Missense_MutationnovelY267H0.7
COADchr1735922629SilentnovelA205A0.26
COADchr1735930223Silentrs755785027G43G0.15
COADchr1735925633Missense_Mutationrs760143593R94H0.1
COADchr1735920199Silentrs778251776H247H0.28
COADchr17359307445'UTRnovel0.34
COADchr1735930076Missense_MutationnovelK92N0.06
COADchr1735930707Frame_Shift_DelnovelF7Lfs*120.28
COADchr1735924643Missense_MutationnovelI177V0.16
GBMchr17359183153'UTRnovel0.46
GBMchr1735930640Missense_MutationnovelA30P0.08
HNSCchr1735922571Splice_Regionnovel0.19
KIRCchr1735930691Missense_MutationnovelS13C0.16
KIRCchr1735922620Silentrs112692396K208K0.27
KIRPchr1735930134Missense_MutationnovelA73V0.06RRM_1
LGGchr1735922489Intronnovel0.07
LIHCchr1735930106SilentnovelR82R0.19
LIHCchr17359182743'UTRnovel0.26
LUADchr1735924745Missense_Mutationrs148466061R143G0.06
LUADchr1735924766Nonsense_MutationnovelE136*0.44
LUADchr1735924664Missense_MutationnovelC170G0.56
LUSCchr1735922610Missense_MutationnovelD212N0.28
LUSCchr1735924640Missense_MutationnovelG178C0.22
LUSCchr17359157573'Flanknovel0.34
LUSCchr1735920218Missense_Mutationrs192386068R241T0.26
OVchr1735930278Intronnovel0.16
OVchr1735924744Missense_MutationnovelR143M0.65
OVchr1735930138Missense_MutationnovelA72T0.08RRM_1
PRADchr1735920212Missense_MutationnovelE243G0.05
PRADchr1735922533Intronnovel0.13
SKCMchr17359182933'UTRnovel0.63
SKCMchr1735930699Missense_MutationnovelP10L0.23
SKCMchr17359182953'UTRnovel0.14
SKCMchr1735918441Splice_RegionnovelV252V0.38
SKCMchr1735920229Silentrs761480550I237I0.49
SKCMchr17359182103'UTRnovel0.42
SKCMchr1735922675Missense_MutationnovelG190E0.23
SKCMchr17359307575'UTRnovel0.34
SKCMchr1735924713Silentrs373207074P153P0.18
SKCMchr17359183043'UTRnovel0.31
STADchr1735930076Missense_MutationnovelK92N0.2
STADchr1735924623SilentnovelP183P0.29
STADchr1735922631Missense_MutationnovelA205T0.39
STADchr1735930293Intronnovel0.13
STADchr1735924604Nonsense_MutationnovelG190*0.28
UCECchr17359157583'Flanknovel0.29
UCECchr17359307495'UTRrs1825284420.18
UCECchr1735925627Missense_MutationnovelG96D0.24
UCECchr1735922595Missense_MutationnovelL217M0.18
UCECchr1735920229Silentrs761480550I237I0.47
UCECchr1735922634Missense_MutationnovelL204F0.26
UCECchr1735930653SilentnovelG25G0.25
UCECchr1735924687Missense_MutationnovelA162D0.43
UCECchr17359157843'Flanknovel0.51
UCECchr1735924762Missense_MutationnovelL137R0.31
UCECchr1735925557Missense_MutationnovelN119K0.33
UCECchr1735930112Silentrs774535357C80C0.57
UCECchr1735930086Missense_MutationnovelS89F0.3
UCECchr1735930285Intronnovel0.38
UCECchr1735925561Missense_Mutationrs150971295A118V0.11

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.02080.18166
THCADEL0.0020.221
UCSDEL0.39290.19877
UVMDEL0.01250.22482

Survival Analysis
CancerP-value Q-value
THYM0.027

Kaplan-Meier Survival Analysis

KIRC0.00016

Kaplan-Meier Survival Analysis

MESO0.0001

Kaplan-Meier Survival Analysis

ACC0.0026

Kaplan-Meier Survival Analysis

KIRP0.00023

Kaplan-Meier Survival Analysis

PAAD0.023

Kaplan-Meier Survival Analysis

BLCA0.049

Kaplan-Meier Survival Analysis

CESC0.041

Kaplan-Meier Survival Analysis

READ0.021

Kaplan-Meier Survival Analysis

LAML0.0088

Kaplan-Meier Survival Analysis

UCEC0.003

Kaplan-Meier Survival Analysis

GBM0.028

Kaplan-Meier Survival Analysis

LIHC0.00011

Kaplan-Meier Survival Analysis

LUAD0.018

Kaplan-Meier Survival Analysis

UVM0.042

Kaplan-Meier Survival Analysis

OV0.039

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Literatures
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000278023 (Gene tree)
Gene ID
201299
Gene Symbol
RDM1
Alias
MGC33977|RAD52B
Full Name
RAD52 motif containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
12,746 bases
Position
chr17:35,918,066-35,930,811
Accession
19950
RBP type
canonical RBP
Summary
This gene encodes a protein involved in the cellular response to cisplatin, a drug commonly used in chemotherapy. The protein encoded by this gene contains two motifs: a motif found in RAD52, a protein that functions in DNA double-strand breaks and homologous recombination, and an RNA recognition motif (RRM) that is not found in RAD52. The RAD52 motif region in RAD52 is important for protein function and may be involved in DNA binding or oligomerization. Alternatively spliced transcript variants encoding different isoforms have been reported. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000480131RRM_1PF00076.221.9e-0511
ENSP00000491541RRM_1PF00076.222.7e-0511
ENSP00000479622RRM_1PF00076.223.1e-0511
ENSP00000483387RRM_1PF00076.223.9e-0511
ENSP00000483890RRM_1PF00076.225.7e-0511
ENSP00000482288RRM_1PF00076.226.4e-0511
ENSP00000483933RRM_1PF00076.226.6e-0511
ENSP00000478915RRM_1PF00076.227.3e-0511
ENSP00000479310RRM_1PF00076.227.8e-0511
ENSP00000483549RRM_1PF00076.228.4e-0511

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
16630539Nucleic acid-binding properties of the RRM-containing protein RDM1.Biochem Biophys Res Commun2006 May 26Hamimes S-
15611051RDM1, a novel RNA recognition motif (RRM)-containing protein involved in the cell response to cisplatin in vertebrates.J Biol Chem2005 Mar 11Hamimes S-
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000619876RDM1-2271491-ENSP00000483890213 (aa)-B4DZ74
ENST00000619193RDM1-223686-ENSP00000482981139 (aa)-Q8NG50
ENST00000612980RDM1-215501-ENSP00000483387166 (aa)-Q8NG50
ENST00000613308RDM1-216779XM_011524509ENSP00000482288236 (aa)XP_011522811Q8NG50
ENST00000639942RDM1-229420-ENSP00000491541139 (aa)-Q8NG50
ENST00000615378RDM1-219542-ENSP00000480131116 (aa)-Q8NG50
ENST00000615024RDM1-217617-ENSP00000481648116 (aa)-Q8NG50
ENST00000617591RDM1-221432-ENSP00000479622143 (aa)-Q8NG50
ENST00000615288RDM1-218587-ENSP00000477869137 (aa)-Q8NG50
ENST00000619262RDM1-2241535-ENSP00000479310261 (aa)-Q8NG50
ENST00000616596RDM1-2201032-ENSP00000478915251 (aa)-Q8NG50
ENST00000619828RDM1-226687-ENSP00000483933228 (aa)-Q8NG50
ENST00000618511RDM1-222518-ENSP00000477995114 (aa)-Q8NG50
ENST00000619368RDM1-225506-ENSP0000047813179 (aa)-Q8NG50
ENST00000620284RDM1-2281177-ENSP00000483549284 (aa)-Q8NG50
Gene Model
Click here to download ENSG00000278023's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000278023rs99072951735930309CFibroblast growth factor basic levels27989323[0.079-0.185] SD units increase0.1319EFO_0008130
ENSG00000278023rs286958411735926187GRANTES levels27989323[0.1-0.23] SD units increase0.1658EFO_0005117
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000278023's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000278023RDM19544.697ENSAPOG00000021886zgc:1035648434.348Acanthochromis_polyacanthus
ENSG00000278023RDM15585.714ENSAMEG00000019542-9385.714Ailuropoda_melanoleuca
ENSG00000278023RDM19544.697ENSAPEG00000008929zgc:1035649233.333Amphiprion_percula
ENSG00000278023RDM19167.925ENSAPLG00000004384RDM19653.571Anas_platyrhynchos
ENSG00000278023RDM19656.061ENSACAG00000012989-10049.117Anolis_carolinensis
ENSG00000278023RDM110092.806ENSANAG00000032752RDM110092.806Aotus_nancymaae
ENSG00000278023RDM110088.806ENSBTAG00000000030RDM110078.596Bos_taurus
ENSG00000278023RDM110094.245ENSCJAG00000015031RDM110094.245Callithrix_jacchus
ENSG00000278023RDM19083.495ENSCAFG00000015160-10073.828Canis_familiaris
ENSG00000278023RDM19788.722ENSCHIG00000020607RDM110078.723Capra_hircus
ENSG00000278023RDM19778.947ENSCPOG00000001495-9968.662Cavia_porcellus
ENSG00000278023RDM110092.086ENSCCAG00000035763RDM110092.086Cebus_capucinus
ENSG00000278023RDM110097.015ENSCATG00000044451RDM110096.403Cercocebus_atys
ENSG00000278023RDM110092.776ENSCSAG00000006209RDM110092.776Chlorocebus_sabaeus
ENSG00000278023RDM19070.874ENSCPBG00000009105RDM19554.032Chrysemys_picta_bellii
ENSG00000278023RDM110095.783ENSCANG00000041322RDM110095.783Colobus_angolensis_palliatus
ENSG00000278023RDM19779.699ENSCGRG00001015927Rdm19972.438Cricetulus_griseus_chok1gshd
ENSG00000278023RDM19539.394ENSCVAG00000001956zgc:1035648635.443Cyprinodon_variegatus
ENSG00000278023RDM19585.577ENSDNOG00000045224-9481.890Dasypus_novemcinctus
ENSG00000278023RDM19687.156ENSEASG00005010554RDM17780.465Equus_asinus_asinus
ENSG00000278023RDM19790.977ENSECAG00000022182RDM19181.961Equus_caballus
ENSG00000278023RDM19481.188ENSEEUG00000006127RDM110072.619Erinaceus_europaeus
ENSG00000278023RDM19990.323ENSFCAG00000043429RDM110086.331Felis_catus
ENSG00000278023RDM19663.636ENSGALG00000000243RDM19753.791Gallus_gallus
ENSG00000278023RDM18972.277ENSGAGG00000000293-7853.815Gopherus_agassizii
ENSG00000278023RDM110098.193ENSGGOG00000010584RDM110098.193Gorilla_gorilla
ENSG00000278023RDM19541.985ENSHCOG00000002518-8935.857Hippocampus_comes
ENSG00000278023RDM110087.313ENSSTOG00000022491RDM110083.451Ictidomys_tridecemlineatus
ENSG00000278023RDM19787.218ENSLAFG00000029300RDM110077.622Loxodonta_africana
ENSG00000278023RDM110097.015ENSMFAG00000032968RDM110096.403Macaca_fascicularis
ENSG00000278023RDM110097.015ENSMMUG00000006847RDM110096.386Macaca_mulatta
ENSG00000278023RDM110097.015ENSMNEG00000039977RDM110096.403Macaca_nemestrina
ENSG00000278023RDM110097.015ENSMLEG00000041158RDM110096.386Mandrillus_leucophaeus
ENSG00000278023RDM18966.337ENSMGAG00000008774RDM19654.694Meleagris_gallopavo
ENSG00000278023RDM19979.104ENSMAUG00000018559Rdm19972.183Mesocricetus_auratus
ENSG00000278023RDM110092.537ENSMICG00000038651RDM110090.580Microcebus_murinus
ENSG00000278023RDM19777.444ENSMOCG00000015095Rdm19968.478Microtus_ochrogaster
ENSG00000278023RDM19672.727ENSMODG00000011101RDM110063.406Monodelphis_domestica
ENSG00000278023RDM19782.707MGP_CAROLIEiJ_G0017226Rdm19972.085Mus_caroli
ENSG00000278023RDM19781.955ENSMUSG00000010362Rdm19972.143Mus_musculus
ENSG00000278023RDM19982.836MGP_PahariEiJ_G0018356Rdm19972.535Mus_pahari
ENSG00000278023RDM19781.203MGP_SPRETEiJ_G0018069Rdm19971.731Mus_spretus
ENSG00000278023RDM19789.474ENSMPUG00000008363RDM110080.769Mustela_putorius_furo
ENSG00000278023RDM110096.831ENSNLEG00000014173RDM110096.831Nomascus_leucogenys
ENSG00000278023RDM19672.727ENSMEUG00000015826RDM110066.135Notamacropus_eugenii
ENSG00000278023RDM19784.211ENSOCUG00000022704RDM19777.470Oryctolagus_cuniculus
ENSG00000278023RDM110085.821ENSOGAG00000011332RDM110082.394Otolemur_garnettii
ENSG00000278023RDM110098.507ENSPPAG00000029969RDM110098.239Pan_paniscus
ENSG00000278023RDM110098.795ENSPTRG00000009031RDM110098.795Pan_troglodytes
ENSG00000278023RDM110096.269ENSPANG00000022933RDM110095.783Papio_anubis
ENSG00000278023RDM19778.947ENSPEMG00000018985Rdm19971.479Peromyscus_maniculatus_bairdii
ENSG00000278023RDM110096.479ENSPPYG00000008198RDM110096.479Pongo_abelii
ENSG00000278023RDM110087.770ENSPCOG00000017995RDM110087.770Propithecus_coquereli
ENSG00000278023RDM19790.226ENSPVAG00000001116RDM110083.267Pteropus_vampyrus
ENSG00000278023RDM19781.955ENSRNOG00000020751Rdm19971.786Rattus_norvegicus
ENSG00000278023RDM110096.403ENSRBIG00000030000RDM110096.403Rhinopithecus_bieti
ENSG00000278023RDM110096.386ENSRROG00000035242RDM110096.386Rhinopithecus_roxellana
ENSG00000278023RDM19675.758ENSSHAG00000013584RDM110067.029Sarcophilus_harrisii
ENSG00000278023RDM18869.000ENSSPUG00000010941RDM19453.585Sphenodon_punctatus
ENSG00000278023RDM19545.455ENSSPAG00000011690-9536.226Stegastes_partitus
ENSG00000278023RDM18283.036ENSSSCG00000017574-9372.768Sus_scrofa
ENSG00000278023RDM19483.333ENSTBEG00000010030RDM19962.698Tupaia_belangeri
ENSG00000278023RDM19789.474ENSUAMG00000027279RDM110082.042Ursus_americanus
ENSG00000278023RDM19789.474ENSUMAG00000015423RDM19882.042Ursus_maritimus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005730nucleolus-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0015030Cajal body-IEAComponent
GO:0016605PML body-IEAComponent
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