Cancer | Chr | Position | Mutation Type | dbSNP | Protein-change | Allele Freq | RBD |
---|---|---|---|---|---|---|---|
BLCA | |||||||
BLCA | |||||||
BLCA | |||||||
BRCA | |||||||
CESC | |||||||
CESC | |||||||
CESC | |||||||
CHOL | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
COAD | |||||||
GBM | |||||||
GBM | |||||||
HNSC | |||||||
KIRC | |||||||
KIRC | |||||||
KIRP | |||||||
LGG | |||||||
LIHC | |||||||
LIHC | |||||||
LUAD | |||||||
LUAD | |||||||
LUAD | |||||||
LUSC | |||||||
LUSC | |||||||
LUSC | |||||||
LUSC | |||||||
OV | |||||||
OV | |||||||
OV | |||||||
PRAD | |||||||
PRAD | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
SKCM | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
STAD | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC | |||||||
UCEC |
Cancer | Type | Freq | Q-value |
---|---|---|---|
DLBC | |||
THCA | |||
UCS | |||
UVM |
Cancer | P-value | Q-value |
---|---|---|
THYM | ||
KIRC | ||
MESO | ||
ACC | ||
KIRP | ||
PAAD | ||
BLCA | ||
CESC | ||
READ | ||
LAML | ||
UCEC | ||
GBM | ||
LIHC | ||
LUAD | ||
UVM | ||
OV |
Protein ID | Domain | Pfam ID | E-value | Domain number | Total number |
---|---|---|---|---|---|
ENSP00000480131 | RRM_1 | PF00076.22 | 1.9e-05 | 1 | 1 |
ENSP00000491541 | RRM_1 | PF00076.22 | 2.7e-05 | 1 | 1 |
ENSP00000479622 | RRM_1 | PF00076.22 | 3.1e-05 | 1 | 1 |
ENSP00000483387 | RRM_1 | PF00076.22 | 3.9e-05 | 1 | 1 |
ENSP00000483890 | RRM_1 | PF00076.22 | 5.7e-05 | 1 | 1 |
ENSP00000482288 | RRM_1 | PF00076.22 | 6.4e-05 | 1 | 1 |
ENSP00000483933 | RRM_1 | PF00076.22 | 6.6e-05 | 1 | 1 |
ENSP00000478915 | RRM_1 | PF00076.22 | 7.3e-05 | 1 | 1 |
ENSP00000479310 | RRM_1 | PF00076.22 | 7.8e-05 | 1 | 1 |
ENSP00000483549 | RRM_1 | PF00076.22 | 8.4e-05 | 1 | 1 |
Transcript ID | Name | Length | RefSeq ID | Protein ID | Length | RefSeq ID | UniportKB ID |
---|---|---|---|---|---|---|---|
ENST00000619876 | RDM1-227 | 1491 | - | ENSP00000483890 | 213 (aa) | - | B4DZ74 |
ENST00000619193 | RDM1-223 | 686 | - | ENSP00000482981 | 139 (aa) | - | Q8NG50 |
ENST00000612980 | RDM1-215 | 501 | - | ENSP00000483387 | 166 (aa) | - | Q8NG50 |
ENST00000613308 | RDM1-216 | 779 | XM_011524509 | ENSP00000482288 | 236 (aa) | XP_011522811 | Q8NG50 |
ENST00000639942 | RDM1-229 | 420 | - | ENSP00000491541 | 139 (aa) | - | Q8NG50 |
ENST00000615378 | RDM1-219 | 542 | - | ENSP00000480131 | 116 (aa) | - | Q8NG50 |
ENST00000615024 | RDM1-217 | 617 | - | ENSP00000481648 | 116 (aa) | - | Q8NG50 |
ENST00000617591 | RDM1-221 | 432 | - | ENSP00000479622 | 143 (aa) | - | Q8NG50 |
ENST00000615288 | RDM1-218 | 587 | - | ENSP00000477869 | 137 (aa) | - | Q8NG50 |
ENST00000619262 | RDM1-224 | 1535 | - | ENSP00000479310 | 261 (aa) | - | Q8NG50 |
ENST00000616596 | RDM1-220 | 1032 | - | ENSP00000478915 | 251 (aa) | - | Q8NG50 |
ENST00000619828 | RDM1-226 | 687 | - | ENSP00000483933 | 228 (aa) | - | Q8NG50 |
ENST00000618511 | RDM1-222 | 518 | - | ENSP00000477995 | 114 (aa) | - | Q8NG50 |
ENST00000619368 | RDM1-225 | 506 | - | ENSP00000478131 | 79 (aa) | - | Q8NG50 |
ENST00000620284 | RDM1-228 | 1177 | - | ENSP00000483549 | 284 (aa) | - | Q8NG50 |
ensgID | SNP | Chromosome | Position | SNP-risk | Trait | PubmedID | 95% CI | Or or BEAT | EFO ID |
---|---|---|---|---|---|---|---|---|---|
ENSG00000278023 | rs9907295 | 17 | 35930309 | C | Fibroblast growth factor basic levels | 27989323 | [0.079-0.185] SD units increase | 0.1319 | EFO_0008130 |
ENSG00000278023 | rs28695841 | 17 | 35926187 | G | RANTES levels | 27989323 | [0.1-0.23] SD units increase | 0.1658 | EFO_0005117 |
Ensembl ID | Gene Symbol | Coverage | Identiy | Ortholog | Gene Symbol | Coverage | Identiy | Species |
---|---|---|---|---|---|---|---|---|
ENSG00000278023 | RDM1 | 95 | 44.697 | ENSAPOG00000021886 | zgc:103564 | 84 | 34.348 | Acanthochromis_polyacanthus |
ENSG00000278023 | RDM1 | 55 | 85.714 | ENSAMEG00000019542 | - | 93 | 85.714 | Ailuropoda_melanoleuca |
ENSG00000278023 | RDM1 | 95 | 44.697 | ENSAPEG00000008929 | zgc:103564 | 92 | 33.333 | Amphiprion_percula |
ENSG00000278023 | RDM1 | 91 | 67.925 | ENSAPLG00000004384 | RDM1 | 96 | 53.571 | Anas_platyrhynchos |
ENSG00000278023 | RDM1 | 96 | 56.061 | ENSACAG00000012989 | - | 100 | 49.117 | Anolis_carolinensis |
ENSG00000278023 | RDM1 | 100 | 92.806 | ENSANAG00000032752 | RDM1 | 100 | 92.806 | Aotus_nancymaae |
ENSG00000278023 | RDM1 | 100 | 88.806 | ENSBTAG00000000030 | RDM1 | 100 | 78.596 | Bos_taurus |
ENSG00000278023 | RDM1 | 100 | 94.245 | ENSCJAG00000015031 | RDM1 | 100 | 94.245 | Callithrix_jacchus |
ENSG00000278023 | RDM1 | 90 | 83.495 | ENSCAFG00000015160 | - | 100 | 73.828 | Canis_familiaris |
ENSG00000278023 | RDM1 | 97 | 88.722 | ENSCHIG00000020607 | RDM1 | 100 | 78.723 | Capra_hircus |
ENSG00000278023 | RDM1 | 97 | 78.947 | ENSCPOG00000001495 | - | 99 | 68.662 | Cavia_porcellus |
ENSG00000278023 | RDM1 | 100 | 92.086 | ENSCCAG00000035763 | RDM1 | 100 | 92.086 | Cebus_capucinus |
ENSG00000278023 | RDM1 | 100 | 97.015 | ENSCATG00000044451 | RDM1 | 100 | 96.403 | Cercocebus_atys |
ENSG00000278023 | RDM1 | 100 | 92.776 | ENSCSAG00000006209 | RDM1 | 100 | 92.776 | Chlorocebus_sabaeus |
ENSG00000278023 | RDM1 | 90 | 70.874 | ENSCPBG00000009105 | RDM1 | 95 | 54.032 | Chrysemys_picta_bellii |
ENSG00000278023 | RDM1 | 100 | 95.783 | ENSCANG00000041322 | RDM1 | 100 | 95.783 | Colobus_angolensis_palliatus |
ENSG00000278023 | RDM1 | 97 | 79.699 | ENSCGRG00001015927 | Rdm1 | 99 | 72.438 | Cricetulus_griseus_chok1gshd |
ENSG00000278023 | RDM1 | 95 | 39.394 | ENSCVAG00000001956 | zgc:103564 | 86 | 35.443 | Cyprinodon_variegatus |
ENSG00000278023 | RDM1 | 95 | 85.577 | ENSDNOG00000045224 | - | 94 | 81.890 | Dasypus_novemcinctus |
ENSG00000278023 | RDM1 | 96 | 87.156 | ENSEASG00005010554 | RDM1 | 77 | 80.465 | Equus_asinus_asinus |
ENSG00000278023 | RDM1 | 97 | 90.977 | ENSECAG00000022182 | RDM1 | 91 | 81.961 | Equus_caballus |
ENSG00000278023 | RDM1 | 94 | 81.188 | ENSEEUG00000006127 | RDM1 | 100 | 72.619 | Erinaceus_europaeus |
ENSG00000278023 | RDM1 | 99 | 90.323 | ENSFCAG00000043429 | RDM1 | 100 | 86.331 | Felis_catus |
ENSG00000278023 | RDM1 | 96 | 63.636 | ENSGALG00000000243 | RDM1 | 97 | 53.791 | Gallus_gallus |
ENSG00000278023 | RDM1 | 89 | 72.277 | ENSGAGG00000000293 | - | 78 | 53.815 | Gopherus_agassizii |
ENSG00000278023 | RDM1 | 100 | 98.193 | ENSGGOG00000010584 | RDM1 | 100 | 98.193 | Gorilla_gorilla |
ENSG00000278023 | RDM1 | 95 | 41.985 | ENSHCOG00000002518 | - | 89 | 35.857 | Hippocampus_comes |
ENSG00000278023 | RDM1 | 100 | 87.313 | ENSSTOG00000022491 | RDM1 | 100 | 83.451 | Ictidomys_tridecemlineatus |
ENSG00000278023 | RDM1 | 97 | 87.218 | ENSLAFG00000029300 | RDM1 | 100 | 77.622 | Loxodonta_africana |
ENSG00000278023 | RDM1 | 100 | 97.015 | ENSMFAG00000032968 | RDM1 | 100 | 96.403 | Macaca_fascicularis |
ENSG00000278023 | RDM1 | 100 | 97.015 | ENSMMUG00000006847 | RDM1 | 100 | 96.386 | Macaca_mulatta |
ENSG00000278023 | RDM1 | 100 | 97.015 | ENSMNEG00000039977 | RDM1 | 100 | 96.403 | Macaca_nemestrina |
ENSG00000278023 | RDM1 | 100 | 97.015 | ENSMLEG00000041158 | RDM1 | 100 | 96.386 | Mandrillus_leucophaeus |
ENSG00000278023 | RDM1 | 89 | 66.337 | ENSMGAG00000008774 | RDM1 | 96 | 54.694 | Meleagris_gallopavo |
ENSG00000278023 | RDM1 | 99 | 79.104 | ENSMAUG00000018559 | Rdm1 | 99 | 72.183 | Mesocricetus_auratus |
ENSG00000278023 | RDM1 | 100 | 92.537 | ENSMICG00000038651 | RDM1 | 100 | 90.580 | Microcebus_murinus |
ENSG00000278023 | RDM1 | 97 | 77.444 | ENSMOCG00000015095 | Rdm1 | 99 | 68.478 | Microtus_ochrogaster |
ENSG00000278023 | RDM1 | 96 | 72.727 | ENSMODG00000011101 | RDM1 | 100 | 63.406 | Monodelphis_domestica |
ENSG00000278023 | RDM1 | 97 | 82.707 | MGP_CAROLIEiJ_G0017226 | Rdm1 | 99 | 72.085 | Mus_caroli |
ENSG00000278023 | RDM1 | 97 | 81.955 | ENSMUSG00000010362 | Rdm1 | 99 | 72.143 | Mus_musculus |
ENSG00000278023 | RDM1 | 99 | 82.836 | MGP_PahariEiJ_G0018356 | Rdm1 | 99 | 72.535 | Mus_pahari |
ENSG00000278023 | RDM1 | 97 | 81.203 | MGP_SPRETEiJ_G0018069 | Rdm1 | 99 | 71.731 | Mus_spretus |
ENSG00000278023 | RDM1 | 97 | 89.474 | ENSMPUG00000008363 | RDM1 | 100 | 80.769 | Mustela_putorius_furo |
ENSG00000278023 | RDM1 | 100 | 96.831 | ENSNLEG00000014173 | RDM1 | 100 | 96.831 | Nomascus_leucogenys |
ENSG00000278023 | RDM1 | 96 | 72.727 | ENSMEUG00000015826 | RDM1 | 100 | 66.135 | Notamacropus_eugenii |
ENSG00000278023 | RDM1 | 97 | 84.211 | ENSOCUG00000022704 | RDM1 | 97 | 77.470 | Oryctolagus_cuniculus |
ENSG00000278023 | RDM1 | 100 | 85.821 | ENSOGAG00000011332 | RDM1 | 100 | 82.394 | Otolemur_garnettii |
ENSG00000278023 | RDM1 | 100 | 98.507 | ENSPPAG00000029969 | RDM1 | 100 | 98.239 | Pan_paniscus |
ENSG00000278023 | RDM1 | 100 | 98.795 | ENSPTRG00000009031 | RDM1 | 100 | 98.795 | Pan_troglodytes |
ENSG00000278023 | RDM1 | 100 | 96.269 | ENSPANG00000022933 | RDM1 | 100 | 95.783 | Papio_anubis |
ENSG00000278023 | RDM1 | 97 | 78.947 | ENSPEMG00000018985 | Rdm1 | 99 | 71.479 | Peromyscus_maniculatus_bairdii |
ENSG00000278023 | RDM1 | 100 | 96.479 | ENSPPYG00000008198 | RDM1 | 100 | 96.479 | Pongo_abelii |
ENSG00000278023 | RDM1 | 100 | 87.770 | ENSPCOG00000017995 | RDM1 | 100 | 87.770 | Propithecus_coquereli |
ENSG00000278023 | RDM1 | 97 | 90.226 | ENSPVAG00000001116 | RDM1 | 100 | 83.267 | Pteropus_vampyrus |
ENSG00000278023 | RDM1 | 97 | 81.955 | ENSRNOG00000020751 | Rdm1 | 99 | 71.786 | Rattus_norvegicus |
ENSG00000278023 | RDM1 | 100 | 96.403 | ENSRBIG00000030000 | RDM1 | 100 | 96.403 | Rhinopithecus_bieti |
ENSG00000278023 | RDM1 | 100 | 96.386 | ENSRROG00000035242 | RDM1 | 100 | 96.386 | Rhinopithecus_roxellana |
ENSG00000278023 | RDM1 | 96 | 75.758 | ENSSHAG00000013584 | RDM1 | 100 | 67.029 | Sarcophilus_harrisii |
ENSG00000278023 | RDM1 | 88 | 69.000 | ENSSPUG00000010941 | RDM1 | 94 | 53.585 | Sphenodon_punctatus |
ENSG00000278023 | RDM1 | 95 | 45.455 | ENSSPAG00000011690 | - | 95 | 36.226 | Stegastes_partitus |
ENSG00000278023 | RDM1 | 82 | 83.036 | ENSSSCG00000017574 | - | 93 | 72.768 | Sus_scrofa |
ENSG00000278023 | RDM1 | 94 | 83.333 | ENSTBEG00000010030 | RDM1 | 99 | 62.698 | Tupaia_belangeri |
ENSG00000278023 | RDM1 | 97 | 89.474 | ENSUAMG00000027279 | RDM1 | 100 | 82.042 | Ursus_americanus |
ENSG00000278023 | RDM1 | 97 | 89.474 | ENSUMAG00000015423 | RDM1 | 98 | 82.042 | Ursus_maritimus |
Go ID | Go_term | PubmedID | Evidence | Category |
---|---|---|---|---|
GO:0003677 | DNA binding | - | IEA | Function |
GO:0003723 | RNA binding | - | IEA | Function |
GO:0005515 | protein binding | 25416956. | IPI | Function |
GO:0005730 | nucleolus | - | IDA | Component |
GO:0005829 | cytosol | - | IDA | Component |
GO:0015030 | Cajal body | - | IEA | Component |
GO:0016605 | PML body | - | IEA | Component |