RNA binding proteome (RBPome)
PID | Title | Method |
Time | Author | Doi |
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30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & HEK293 | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
29431736 | Capturing the interactome of newly transcribed RNA | PolyT-RICK & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
29431736 | Capturing the interactome of newly transcribed RNA | RIC & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
29431736 | Capturing the interactome of newly transcribed RNA | RICK & Hela | 2018 Feb 12 | Bao X | DOI: 10.1038/nmeth.4595 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & Hela | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & MCF10A | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
30528433 | The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | XRNAX & MCF7 | 2018 Dec 6 | Trendel J | DOI: 10.1016/j.cell.2018.11.004 |
30607034 | Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS) | OOPS & U2OS | 2019 Jan 3 | Queiroz RML | DOI: 10.1038/s41587-018-0001-2 |
27453046 | Comprehensive Identification of RNA-Binding Domains in Human Cells | RIC & Hela | 2016 Aug 18 | Castello A | DOI: 10.1016/j.molcel.2016.06.029 |
Protein-Protein Interaction (PPI)
* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl ID | Gene Symbol | Coverage | Identiy |
Ortholog | Gene Symbol | Coverage | Identiy |
Species |
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ENSG00000278637 | HIST1H4A | 100 | 100.000 | ENSG00000277157 | HIST1H4D | 100 | 100.000 | Homo_sapiens |
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ENSG00000278637 | HIST1H4A | 100 | 100.000 | ENSG00000273542 | HIST1H4K | 100 | 100.000 | Homo_sapiens |
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ENSG00000278637 | HIST1H4A | 100 | 100.000 | ENSG00000158406 | HIST1H4H | 100 | 100.000 | Homo_sapiens |
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ENSG00000278637 | HIST1H4A | 100 | 100.000 | ENSG00000197238 | HIST1H4J | 100 | 100.000 | Homo_sapiens |
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ENSG00000278637 | HIST1H4A | 100 | 100.000 | ENSMUSG00000060093 | Hist1h4a | 100 | 100.000 | Mus_musculus |
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