EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACAG00000002093 (Gene tree)
Gene ID: 100559653
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Minus strand
Length: 31606 bases
Position: chr3:187064008-187095613
Accession: 100559653
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000002063	RRM_1	PF00076.22	9.7e-33	1	2
ENSACAP00000002063	RRM_1	PF00076.22	9.7e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000002117	PSPC1-201	1604	XM_003219244	ENSACAP00000002063	529 (aa)	XP_003219292	G1KAB1

Gene Model

Click here to download ENSACAG00000002093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000002093's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACAG00000002093	PSPC1	88	56.197	ENSACAG00000013307	-	55	66.667
ENSACAG00000002093	PSPC1	58	71.242	ENSACAG00000015026	NONO	89	60.086

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000002093	PSPC1	88	91.845	ENSG00000121390	PSPC1	99	83.302	Homo_sapiens
ENSACAG00000002093	PSPC1	88	69.072	ENSAPOG00000015946	pspc1	88	68.632	Acanthochromis_polyacanthus
ENSACAG00000002093	PSPC1	99	84.528	ENSAMEG00000017420	PSPC1	89	91.631	Ailuropoda_melanoleuca
ENSACAG00000002093	PSPC1	99	55.435	ENSACIG00000018695	pspc1	88	57.773	Amphilophus_citrinellus
ENSACAG00000002093	PSPC1	91	66.934	ENSAOCG00000005279	pspc1	89	67.427	Amphiprion_ocellaris
ENSACAG00000002093	PSPC1	91	67.339	ENSAPEG00000015927	pspc1	88	67.850	Amphiprion_percula
ENSACAG00000002093	PSPC1	90	55.488	ENSATEG00000004878	pspc1	88	55.950	Anabas_testudineus
ENSACAG00000002093	PSPC1	88	60.510	ENSAPLG00000003643	SFPQ	83	57.143	Anas_platyrhynchos
ENSACAG00000002093	PSPC1	77	93.612	ENSAPLG00000006246	PSPC1	100	93.366	Anas_platyrhynchos
ENSACAG00000002093	PSPC1	99	84.571	ENSANAG00000000059	PSPC1	99	82.931	Aotus_nancymaae
ENSACAG00000002093	PSPC1	99	54.917	ENSACLG00000027220	pspc1	88	57.764	Astatotilapia_calliptera
ENSACAG00000002093	PSPC1	99	61.922	ENSAMXG00000036881	pspc1	99	64.000	Astyanax_mexicanus
ENSACAG00000002093	PSPC1	99	84.952	ENSBTAG00000003934	PSPC1	99	84.411	Bos_taurus
ENSACAG00000002093	PSPC1	99	84.762	ENSCJAG00000004554	PSPC1	99	83.117	Callithrix_jacchus
ENSACAG00000002093	PSPC1	88	91.845	ENSCAFG00020002009	PSPC1	89	91.631	Canis_lupus_dingo
ENSACAG00000002093	PSPC1	99	84.952	ENSCHIG00000016708	PSPC1	99	84.411	Capra_hircus
ENSACAG00000002093	PSPC1	76	84.483	ENSTSYG00000032882	PSPC1	93	79.059	Carlito_syrichta
ENSACAG00000002093	PSPC1	99	84.659	ENSCPOG00000000395	PSPC1	99	84.571	Cavia_porcellus
ENSACAG00000002093	PSPC1	99	84.762	ENSCCAG00000033498	PSPC1	99	83.117	Cebus_capucinus
ENSACAG00000002093	PSPC1	88	91.631	ENSCATG00000036434	PSPC1	90	96.626	Cercocebus_atys
ENSACAG00000002093	PSPC1	88	82.441	ENSCLAG00000005241	PSPC1	99	82.013	Chinchilla_lanigera
ENSACAG00000002093	PSPC1	99	78.759	ENSCHOG00000008913	PSPC1	99	78.850	Choloepus_hoffmanni
ENSACAG00000002093	PSPC1	100	88.827	ENSCPBG00000020859	PSPC1	100	89.454	Chrysemys_picta_bellii
ENSACAG00000002093	PSPC1	59	60.129	ENSCSAVG00000003533	-	59	58.599	Ciona_savignyi
ENSACAG00000002093	PSPC1	77	77.995	ENSCANG00000018948	PSPC1	87	96.578	Colobus_angolensis_palliatus
ENSACAG00000002093	PSPC1	99	84.615	ENSCGRG00001018368	Pspc1	99	85.143	Cricetulus_griseus_chok1gshd
ENSACAG00000002093	PSPC1	99	84.615	ENSCGRG00000011724	Pspc1	99	85.143	Cricetulus_griseus_crigri
ENSACAG00000002093	PSPC1	90	64.182	ENSCVAG00000007679	-	89	61.602	Cyprinodon_variegatus
ENSACAG00000002093	PSPC1	99	64.088	ENSDARG00000006621	pspc1	100	66.746	Danio_rerio
ENSACAG00000002093	PSPC1	88	91.863	ENSDNOG00000011078	PSPC1	99	82.746	Dasypus_novemcinctus
ENSACAG00000002093	PSPC1	99	80.705	ENSDORG00000016050	Pspc1	99	82.095	Dipodomys_ordii
ENSACAG00000002093	PSPC1	55	98.020	ENSETEG00000000502	-	72	98.020	Echinops_telfairi
ENSACAG00000002093	PSPC1	53	48.693	ENSEBUG00000010133	pspc1	72	51.636	Eptatretus_burgeri
ENSACAG00000002093	PSPC1	90	57.341	ENSEBUG00000003964	-	65	70.278	Eptatretus_burgeri
ENSACAG00000002093	PSPC1	88	91.845	ENSEASG00005000119	PSPC1	89	91.631	Equus_asinus_asinus
ENSACAG00000002093	PSPC1	88	91.845	ENSECAG00000017286	PSPC1	89	91.631	Equus_caballus
ENSACAG00000002093	PSPC1	72	74.688	ENSEEUG00000011288	-	72	75.000	Erinaceus_europaeus
ENSACAG00000002093	PSPC1	99	64.973	ENSELUG00000003746	pspc1	94	72.335	Esox_lucius
ENSACAG00000002093	PSPC1	99	82.746	ENSFCAG00000027841	PSPC1	89	91.845	Felis_catus
ENSACAG00000002093	PSPC1	100	87.782	ENSFALG00000008750	PSPC1	100	89.118	Ficedula_albicollis
ENSACAG00000002093	PSPC1	99	84.981	ENSFDAG00000002617	PSPC1	91	91.416	Fukomys_damarensis
ENSACAG00000002093	PSPC1	88	66.524	ENSGMOG00000015074	pspc1	86	65.376	Gadus_morhua
ENSACAG00000002093	PSPC1	100	88.037	ENSGALG00000017142	PSPC1	100	89.831	Gallus_gallus
ENSACAG00000002093	PSPC1	73	68.262	ENSGAFG00000006327	pspc1	81	68.080	Gambusia_affinis
ENSACAG00000002093	PSPC1	88	64.454	ENSGACG00000014901	pspc1	93	72.156	Gasterosteus_aculeatus
ENSACAG00000002093	PSPC1	69	69.648	ENSGAGG00000017325	-	54	69.774	Gopherus_agassizii
ENSACAG00000002093	PSPC1	100	88.641	ENSGAGG00000019164	PSPC1	100	89.266	Gopherus_agassizii
ENSACAG00000002093	PSPC1	88	91.845	ENSGGOG00000003414	PSPC1	99	83.302	Gorilla_gorilla
ENSACAG00000002093	PSPC1	99	63.419	ENSHBUG00000001139	pspc1	88	67.083	Haplochromis_burtoni
ENSACAG00000002093	PSPC1	99	84.499	ENSHGLG00000018811	PSPC1	89	91.416	Heterocephalus_glaber_female
ENSACAG00000002093	PSPC1	66	85.920	ENSHGLG00100007962	PSPC1	98	85.879	Heterocephalus_glaber_male
ENSACAG00000002093	PSPC1	74	68.342	ENSHCOG00000013251	pspc1	85	66.332	Hippocampus_comes
ENSACAG00000002093	PSPC1	99	66.543	ENSIPUG00000013192	pspc1	99	66.055	Ictalurus_punctatus
ENSACAG00000002093	PSPC1	99	84.023	ENSSTOG00000026833	PSPC1	83	96.626	Ictidomys_tridecemlineatus
ENSACAG00000002093	PSPC1	88	91.631	ENSJJAG00000018334	Pspc1	99	84.571	Jaculus_jaculus
ENSACAG00000002093	PSPC1	89	55.789	ENSKMAG00000013525	-	67	69.521	Kryptolebias_marmoratus
ENSACAG00000002093	PSPC1	88	64.463	ENSLBEG00000004474	pspc1	72	73.837	Labrus_bergylta
ENSACAG00000002093	PSPC1	99	78.918	ENSLACG00000010762	PSPC1	99	79.356	Latimeria_chalumnae
ENSACAG00000002093	PSPC1	99	77.083	ENSLOCG00000010832	pspc1	99	76.894	Lepisosteus_oculatus
ENSACAG00000002093	PSPC1	99	83.992	ENSLAFG00000010968	PSPC1	99	84.381	Loxodonta_africana
ENSACAG00000002093	PSPC1	88	91.631	ENSMFAG00000032728	PSPC1	91	96.636	Macaca_fascicularis
ENSACAG00000002093	PSPC1	88	91.631	ENSMMUG00000020262	PSPC1	88	96.626	Macaca_mulatta
ENSACAG00000002093	PSPC1	88	91.631	ENSMNEG00000027401	PSPC1	99	83.058	Macaca_nemestrina
ENSACAG00000002093	PSPC1	76	90.819	ENSMLEG00000039043	PSPC1	94	90.571	Mandrillus_leucophaeus
ENSACAG00000002093	PSPC1	88	66.258	ENSMAMG00000004333	pspc1	88	64.826	Mastacembelus_armatus
ENSACAG00000002093	PSPC1	99	54.917	ENSMZEG00005005726	pspc1	88	57.764	Maylandia_zebra
ENSACAG00000002093	PSPC1	77	93.154	ENSMGAG00000015134	PSPC1	100	92.910	Meleagris_gallopavo
ENSACAG00000002093	PSPC1	88	80.297	ENSMAUG00000021067	Pspc1	98	80.819	Mesocricetus_auratus
ENSACAG00000002093	PSPC1	99	84.381	ENSMICG00000013970	PSPC1	98	84.310	Microcebus_murinus
ENSACAG00000002093	PSPC1	99	84.762	ENSMOCG00000006060	Pspc1	99	84.571	Microtus_ochrogaster
ENSACAG00000002093	PSPC1	91	43.689	ENSMMOG00000004352	pspc1	58	53.374	Mola_mola
ENSACAG00000002093	PSPC1	92	84.805	ENSMODG00000008029	PSPC1	78	84.600	Monodelphis_domestica
ENSACAG00000002093	PSPC1	88	67.804	ENSMALG00000008914	pspc1	88	65.417	Monopterus_albus
ENSACAG00000002093	PSPC1	99	85.143	MGP_CAROLIEiJ_G0019341	Pspc1	98	86.638	Mus_caroli
ENSACAG00000002093	PSPC1	99	85.333	ENSMUSG00000021938	Pspc1	98	86.638	Mus_musculus
ENSACAG00000002093	PSPC1	99	85.143	MGP_PahariEiJ_G0030359	Pspc1	98	86.638	Mus_pahari
ENSACAG00000002093	PSPC1	99	84.952	MGP_SPRETEiJ_G0020232	Pspc1	98	86.422	Mus_spretus
ENSACAG00000002093	PSPC1	88	91.845	ENSMPUG00000013347	PSPC1	89	91.631	Mustela_putorius_furo
ENSACAG00000002093	PSPC1	99	81.919	ENSMLUG00000017663	PSPC1	99	84.091	Myotis_lucifugus
ENSACAG00000002093	PSPC1	99	85.905	ENSNGAG00000011271	Pspc1	99	85.714	Nannospalax_galili
ENSACAG00000002093	PSPC1	73	62.374	ENSNBRG00000014059	pspc1	77	69.394	Neolamprologus_brichardi
ENSACAG00000002093	PSPC1	88	91.845	ENSNLEG00000001294	PSPC1	89	91.631	Nomascus_leucogenys
ENSACAG00000002093	PSPC1	84	82.283	ENSMEUG00000000476	PSPC1	83	82.283	Notamacropus_eugenii
ENSACAG00000002093	PSPC1	88	79.614	ENSODEG00000007817	-	88	79.399	Octodon_degus
ENSACAG00000002093	PSPC1	88	81.529	ENSODEG00000019012	-	89	82.803	Octodon_degus
ENSACAG00000002093	PSPC1	99	63.670	ENSONIG00000012010	pspc1	88	66.944	Oreochromis_niloticus
ENSACAG00000002093	PSPC1	91	64.536	ENSOANG00000011381	-	93	65.319	Ornithorhynchus_anatinus
ENSACAG00000002093	PSPC1	76	90.323	ENSOANG00000009017	-	100	90.074	Ornithorhynchus_anatinus
ENSACAG00000002093	PSPC1	88	91.845	ENSOCUG00000006153	PSPC1	99	83.302	Oryctolagus_cuniculus
ENSACAG00000002093	PSPC1	91	67.470	ENSORLG00000004232	-	87	64.803	Oryzias_latipes
ENSACAG00000002093	PSPC1	91	67.871	ENSORLG00020000578	PSPC1	87	66.109	Oryzias_latipes_hni
ENSACAG00000002093	PSPC1	91	67.269	ENSORLG00015017480	pspc1	87	64.803	Oryzias_latipes_hsok
ENSACAG00000002093	PSPC1	99	84.762	ENSOGAG00000012643	PSPC1	99	83.302	Otolemur_garnettii
ENSACAG00000002093	PSPC1	88	90.558	ENSOARG00000014163	PSPC1	95	89.914	Ovis_aries
ENSACAG00000002093	PSPC1	88	84.979	ENSPPAG00000009836	PSPC1	92	96.626	Pan_paniscus
ENSACAG00000002093	PSPC1	99	82.746	ENSPPRG00000008833	PSPC1	89	91.845	Panthera_pardus
ENSACAG00000002093	PSPC1	76	91.067	ENSPTIG00000016917	PSPC1	84	90.819	Panthera_tigris_altaica
ENSACAG00000002093	PSPC1	81	93.240	ENSPTRG00000005677	PSPC1	98	83.865	Pan_troglodytes
ENSACAG00000002093	PSPC1	88	91.631	ENSPANG00000001992	PSPC1	90	96.636	Papio_anubis
ENSACAG00000002093	PSPC1	88	71.726	ENSPKIG00000003578	pspc1	89	71.488	Paramormyrops_kingsleyae
ENSACAG00000002093	PSPC1	100	87.571	ENSPSIG00000005168	PSPC1	100	87.992	Pelodiscus_sinensis
ENSACAG00000002093	PSPC1	58	70.096	ENSPMGG00000015135	pspc1	84	70.957	Periophthalmus_magnuspinnatus
ENSACAG00000002093	PSPC1	99	84.952	ENSPEMG00000015214	Pspc1	99	83.117	Peromyscus_maniculatus_bairdii
ENSACAG00000002093	PSPC1	54	44.218	ENSPMAG00000004618	pspc1	82	46.667	Petromyzon_marinus
ENSACAG00000002093	PSPC1	99	84.381	ENSPCIG00000017680	PSPC1	99	84.190	Phascolarctos_cinereus
ENSACAG00000002093	PSPC1	92	65.868	ENSPFOG00000003362	pspc1	91	65.121	Poecilia_formosa
ENSACAG00000002093	PSPC1	92	65.868	ENSPLAG00000011540	pspc1	90	65.121	Poecilia_latipinna
ENSACAG00000002093	PSPC1	69	66.213	ENSPLAG00000004407	-	50	68.091	Poecilia_latipinna
ENSACAG00000002093	PSPC1	69	66.120	ENSPMEG00000001025	-	50	68.091	Poecilia_mexicana
ENSACAG00000002093	PSPC1	92	65.469	ENSPMEG00000008322	pspc1	90	64.718	Poecilia_mexicana
ENSACAG00000002093	PSPC1	99	61.566	ENSPREG00000007786	pspc1	90	64.315	Poecilia_reticulata
ENSACAG00000002093	PSPC1	88	91.416	ENSPPYG00000005186	PSPC1	99	82.931	Pongo_abelii
ENSACAG00000002093	PSPC1	65	95.732	ENSPCAG00000008314	-	66	95.732	Procavia_capensis
ENSACAG00000002093	PSPC1	91	85.155	ENSPCOG00000014364	PSPC1	99	79.035	Propithecus_coquereli
ENSACAG00000002093	PSPC1	88	90.578	ENSPVAG00000005036	PSPC1	99	83.810	Pteropus_vampyrus
ENSACAG00000002093	PSPC1	99	55.046	ENSPNYG00000008893	pspc1	88	57.764	Pundamilia_nyererei
ENSACAG00000002093	PSPC1	99	65.989	ENSPNAG00000016511	pspc1	99	66.052	Pygocentrus_nattereri
ENSACAG00000002093	PSPC1	99	85.143	ENSRNOG00000020782	Pspc1	98	86.638	Rattus_norvegicus
ENSACAG00000002093	PSPC1	91	89.441	ENSRBIG00000036057	PSPC1	93	93.824	Rhinopithecus_bieti
ENSACAG00000002093	PSPC1	91	89.441	ENSRROG00000036334	PSPC1	99	83.117	Rhinopithecus_roxellana
ENSACAG00000002093	PSPC1	79	80.576	ENSSBOG00000028172	PSPC1	90	92.058	Saimiri_boliviensis_boliviensis
ENSACAG00000002093	PSPC1	99	79.317	ENSSHAG00000004696	PSPC1	99	79.127	Sarcophilus_harrisii
ENSACAG00000002093	PSPC1	81	77.209	ENSSFOG00015001395	pspc1	99	72.083	Scleropages_formosus
ENSACAG00000002093	PSPC1	99	60.289	ENSSMAG00000001761	pspc1	82	75.758	Scophthalmus_maximus
ENSACAG00000002093	PSPC1	88	67.404	ENSSDUG00000010651	pspc1	99	60.847	Seriola_dumerili
ENSACAG00000002093	PSPC1	88	62.796	ENSSLDG00000004284	pspc1	99	54.380	Seriola_lalandi_dorsalis
ENSACAG00000002093	PSPC1	88	84.764	ENSSARG00000000888	PSPC1	89	84.549	Sorex_araneus
ENSACAG00000002093	PSPC1	100	78.868	ENSSPUG00000008550	PSPC1	100	78.868	Sphenodon_punctatus
ENSACAG00000002093	PSPC1	88	55.158	ENSSPUG00000001136	-	52	62.712	Sphenodon_punctatus
ENSACAG00000002093	PSPC1	89	67.276	ENSSPAG00000001921	pspc1	89	65.984	Stegastes_partitus
ENSACAG00000002093	PSPC1	88	92.060	ENSSSCG00000009569	PSPC1	89	91.845	Sus_scrofa
ENSACAG00000002093	PSPC1	88	95.064	ENSTGUG00000011295	PSPC1	99	94.850	Taeniopygia_guttata
ENSACAG00000002093	PSPC1	88	62.766	ENSTRUG00000011335	pspc1	87	61.702	Takifugu_rubripes
ENSACAG00000002093	PSPC1	88	63.539	ENSTNIG00000010358	pspc1	91	60.915	Tetraodon_nigroviridis
ENSACAG00000002093	PSPC1	88	72.570	ENSTBEG00000002361	PSPC1	88	71.490	Tupaia_belangeri
ENSACAG00000002093	PSPC1	99	84.952	ENSTTRG00000003343	PSPC1	89	91.416	Tursiops_truncatus
ENSACAG00000002093	PSPC1	66	86.158	ENSUAMG00000012309	PSPC1	83	98.264	Ursus_americanus
ENSACAG00000002093	PSPC1	93	88.032	ENSUMAG00000013993	PSPC1	91	96.319	Ursus_maritimus
ENSACAG00000002093	PSPC1	76	90.819	ENSVPAG00000010029	PSPC1	100	90.571	Vicugna_pacos
ENSACAG00000002093	PSPC1	88	91.845	ENSVVUG00000006414	PSPC1	85	96.626	Vulpes_vulpes
ENSACAG00000002093	PSPC1	73	67.003	ENSXCOG00000017438	pspc1	77	76.380	Xiphophorus_couchianus
ENSACAG00000002093	PSPC1	73	67.413	ENSXMAG00000007929	pspc1	80	75.000	Xiphophorus_maculatus