EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACAG00000003606 (Gene tree)
Gene ID: 100558432
Gene Symbol: -
Alias: -
Full Name: vigilin
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 50470 bases
Position: chrGL343466.1:105004-155473
Accession: 100558432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000003753	KH_1	PF00013.29	9e-186	1	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	2	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	3	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	4	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	5	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	6	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	7	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	8	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	9	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	10	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	11	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	12	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	13	14
ENSACAP00000003753	KH_1	PF00013.29	9e-186	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000003844	-	4101	XM_008120388	ENSACAP00000003753	1257 (aa)	XP_008118595	H9G856

Gene Model

Click here to download ENSACAG00000003606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000003606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACAG00000003606	-	99	74.724	ENSACAG00000001556	HDLBP	100	74.724

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000003606	-	100	82.492	ENSAPOG00000006904	hdlbpb	100	82.492	Acanthochromis_polyacanthus
ENSACAG00000003606	-	100	79.430	ENSACIG00000016154	hdlbpb	100	79.430	Amphilophus_citrinellus
ENSACAG00000003606	-	100	82.698	ENSAOCG00000004083	hdlbpb	100	82.698	Amphiprion_ocellaris
ENSACAG00000003606	-	100	82.571	ENSAPEG00000012270	hdlbpb	100	82.571	Amphiprion_percula
ENSACAG00000003606	-	100	82.194	ENSATEG00000019877	hdlbpb	100	82.194	Anabas_testudineus
ENSACAG00000003606	-	100	81.940	ENSACLG00000006618	hdlbpb	100	81.940	Astatotilapia_calliptera
ENSACAG00000003606	-	100	72.806	ENSAMXG00000019946	hdlbpb	100	72.806	Astyanax_mexicanus
ENSACAG00000003606	-	100	81.768	ENSCSEG00000000955	hdlbpb	100	81.768	Cynoglossus_semilaevis
ENSACAG00000003606	-	100	81.467	ENSCVAG00000005345	hdlbpb	100	81.546	Cyprinodon_variegatus
ENSACAG00000003606	-	99	80.032	ENSDARG00000061864	hdlbpb	99	80.032	Danio_rerio
ENSACAG00000003606	-	93	73.995	ENSEBUG00000005304	hdlbpb	96	73.995	Eptatretus_burgeri
ENSACAG00000003606	-	100	63.094	ENSELUG00000019925	hdlbpb	100	70.732	Esox_lucius
ENSACAG00000003606	-	100	76.953	ENSFHEG00000001701	hdlbpb	100	77.111	Fundulus_heteroclitus
ENSACAG00000003606	-	96	80.983	ENSGMOG00000004522	hdlbpb	75	80.983	Gadus_morhua
ENSACAG00000003606	-	100	82.177	ENSGAFG00000005278	hdlbpb	100	82.177	Gambusia_affinis
ENSACAG00000003606	-	99	79.242	ENSGACG00000019361	hdlbpb	100	79.242	Gasterosteus_aculeatus
ENSACAG00000003606	-	100	81.861	ENSHBUG00000018434	hdlbpb	100	81.861	Haplochromis_burtoni
ENSACAG00000003606	-	100	78.910	ENSIPUG00000003291	HDLBP	100	79.301	Ictalurus_punctatus
ENSACAG00000003606	-	100	81.940	ENSKMAG00000016562	hdlbpb	100	81.940	Kryptolebias_marmoratus
ENSACAG00000003606	-	100	82.019	ENSLBEG00000027855	hdlbpb	100	82.019	Labrus_bergylta
ENSACAG00000003606	-	100	89.886	ENSLACG00000007661	hdlbpb	100	89.886	Latimeria_chalumnae
ENSACAG00000003606	-	100	85.533	ENSLOCG00000013909	hdlbpb	100	85.533	Lepisosteus_oculatus
ENSACAG00000003606	-	100	82.078	ENSMAMG00000003035	hdlbpb	100	82.078	Mastacembelus_armatus
ENSACAG00000003606	-	100	81.940	ENSMZEG00005021465	hdlbpb	100	81.940	Maylandia_zebra
ENSACAG00000003606	-	100	81.517	ENSMMOG00000012525	hdlbpb	100	81.517	Mola_mola
ENSACAG00000003606	-	100	80.915	ENSMALG00000008938	hdlbpb	100	80.915	Monopterus_albus
ENSACAG00000003606	-	100	82.019	ENSNBRG00000002236	hdlbpb	100	82.019	Neolamprologus_brichardi
ENSACAG00000003606	-	100	81.782	ENSONIG00000009211	hdlbpb	100	81.782	Oreochromis_niloticus
ENSACAG00000003606	-	100	82.084	ENSORLG00000006581	hdlbpb	100	82.084	Oryzias_latipes
ENSACAG00000003606	-	100	82.005	ENSORLG00020010012	hdlbpb	100	82.005	Oryzias_latipes_hni
ENSACAG00000003606	-	100	82.163	ENSORLG00015006863	hdlbpb	100	82.163	Oryzias_latipes_hsok
ENSACAG00000003606	-	100	82.084	ENSOMEG00000011131	hdlbpb	100	82.084	Oryzias_melastigma
ENSACAG00000003606	-	100	83.254	ENSPKIG00000005966	hdlbpb	100	83.254	Paramormyrops_kingsleyae
ENSACAG00000003606	-	94	85.000	ENSPMGG00000019853	hdlbpb	99	85.000	Periophthalmus_magnuspinnatus
ENSACAG00000003606	-	92	70.648	ENSPMAG00000000249	-	99	70.492	Petromyzon_marinus
ENSACAG00000003606	-	95	76.206	ENSPMAG00000002131	hdlbpb	100	76.206	Petromyzon_marinus
ENSACAG00000003606	-	100	81.435	ENSPFOG00000008755	hdlbpb	100	81.435	Poecilia_formosa
ENSACAG00000003606	-	100	82.256	ENSPLAG00000007055	hdlbpb	100	82.256	Poecilia_latipinna
ENSACAG00000003606	-	100	82.098	ENSPMEG00000001952	hdlbpb	100	82.098	Poecilia_mexicana
ENSACAG00000003606	-	100	82.492	ENSPREG00000012848	hdlbpb	100	82.492	Poecilia_reticulata
ENSACAG00000003606	-	100	81.926	ENSPNYG00000022467	hdlbpb	100	81.926	Pundamilia_nyererei
ENSACAG00000003606	-	100	80.998	ENSPNAG00000011104	hdlbpb	100	80.998	Pygocentrus_nattereri
ENSACAG00000003606	-	100	82.857	ENSSFOG00015023199	hdlbpb	100	82.857	Scleropages_formosus
ENSACAG00000003606	-	100	82.019	ENSSMAG00000008790	hdlbpb	100	82.019	Scophthalmus_maximus
ENSACAG00000003606	-	100	81.926	ENSSDUG00000020694	hdlbpb	100	81.926	Seriola_dumerili
ENSACAG00000003606	-	100	81.768	ENSSLDG00000020807	hdlbpb	100	81.768	Seriola_lalandi_dorsalis
ENSACAG00000003606	-	100	94.193	ENSSPUG00000018688	-	100	94.193	Sphenodon_punctatus
ENSACAG00000003606	-	100	82.413	ENSSPAG00000016969	hdlbpb	100	82.413	Stegastes_partitus
ENSACAG00000003606	-	98	79.335	ENSTRUG00000012888	hdlbpb	99	79.335	Takifugu_rubripes
ENSACAG00000003606	-	99	80.658	ENSTNIG00000002555	hdlbpb	100	80.658	Tetraodon_nigroviridis
ENSACAG00000003606	-	100	61.796	ENSXCOG00000001797	hdlbpb	100	61.796	Xiphophorus_couchianus
ENSACAG00000003606	-	100	82.019	ENSXMAG00000015633	hdlbpb	100	82.019	Xiphophorus_maculatus