EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000004381 (Gene tree)
Gene ID: 100553858
Gene Symbol: CPSF6
Alias: CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 22085 bases
Position: chrGL343256.1:1526494-1548578
Accession: 100553858
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000004300	RRM_1	PF00076.22	5.4e-07	1	1
ENSACAP00000017461	RRM_1	PF00076.22	5.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000017805	CPSF6-201	2505	-	ENSACAP00000017461	541 (aa)	-	H9GPK8
ENSACAT00000004400	CPSF6-202	2496	XM_008116621	ENSACAP00000004300	538 (aa)	-	H9G900

Gene Model

Click here to download ENSACAG00000004381's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000004381's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000004381	CPSF6	53	95.775	ENSG00000111605	CPSF6	88	93.617	Homo_sapiens
ENSACAG00000004381	CPSF6	85	53.846	ENSG00000149532	CPSF7	100	55.172	Homo_sapiens
ENSACAG00000004381	CPSF6	53	95.088	ENSAMEG00000011781	CPSF6	53	95.088	Ailuropoda_melanoleuca
ENSACAG00000004381	CPSF6	61	39.157	ENSAOCG00000012357	CPSF7	63	39.645	Amphiprion_ocellaris
ENSACAG00000004381	CPSF6	61	39.157	ENSAPEG00000015375	CPSF7	57	50.000	Amphiprion_percula
ENSACAG00000004381	CPSF6	65	49.254	ENSANAG00000024635	CPSF7	69	50.829	Aotus_nancymaae
ENSACAG00000004381	CPSF6	64	87.425	ENSAMXG00000016745	CPSF6	75	87.273	Astyanax_mexicanus
ENSACAG00000004381	CPSF6	66	54.359	ENSBTAG00000015263	CPSF7	71	56.000	Bos_taurus
ENSACAG00000004381	CPSF6	53	95.775	ENSBTAG00000007323	CPSF6	52	95.775	Bos_taurus
ENSACAG00000004381	CPSF6	85	53.846	ENSCJAG00000019282	CPSF7	84	55.429	Callithrix_jacchus
ENSACAG00000004381	CPSF6	78	96.610	ENSCJAG00000001798	CPSF6	52	95.775	Callithrix_jacchus
ENSACAG00000004381	CPSF6	61	96.178	ENSCAFG00000000424	CPSF6	51	95.472	Canis_familiaris
ENSACAG00000004381	CPSF6	66	54.359	ENSCAFG00000016152	CPSF7	71	56.571	Canis_familiaris
ENSACAG00000004381	CPSF6	66	54.359	ENSCAFG00020012753	CPSF7	71	56.571	Canis_lupus_dingo
ENSACAG00000004381	CPSF6	53	95.775	ENSCAFG00020016950	CPSF6	52	95.775	Canis_lupus_dingo
ENSACAG00000004381	CPSF6	53	95.775	ENSCHIG00000010792	CPSF6	52	95.775	Capra_hircus
ENSACAG00000004381	CPSF6	66	54.359	ENSCHIG00000014655	CPSF7	71	56.000	Capra_hircus
ENSACAG00000004381	CPSF6	66	54.359	ENSTSYG00000010138	-	71	56.571	Carlito_syrichta
ENSACAG00000004381	CPSF6	71	94.359	ENSTSYG00000008591	CPSF6	65	94.359	Carlito_syrichta
ENSACAG00000004381	CPSF6	62	54.359	ENSCAPG00000006384	CPSF7	70	56.571	Cavia_aperea
ENSACAG00000004381	CPSF6	53	95.775	ENSCPOG00000015201	CPSF6	52	95.775	Cavia_porcellus
ENSACAG00000004381	CPSF6	66	54.359	ENSCPOG00000009980	CPSF7	71	56.571	Cavia_porcellus
ENSACAG00000004381	CPSF6	66	53.846	ENSCCAG00000032367	CPSF7	71	56.000	Cebus_capucinus
ENSACAG00000004381	CPSF6	68	96.610	ENSCCAG00000028149	CPSF6	52	95.775	Cebus_capucinus
ENSACAG00000004381	CPSF6	67	97.126	ENSCATG00000039288	CPSF6	52	95.775	Cercocebus_atys
ENSACAG00000004381	CPSF6	85	53.846	ENSCATG00000042801	CPSF7	81	56.000	Cercocebus_atys
ENSACAG00000004381	CPSF6	66	54.359	ENSCLAG00000003174	CPSF7	71	56.000	Chinchilla_lanigera
ENSACAG00000004381	CPSF6	85	53.846	ENSCSAG00000006414	CPSF7	81	56.000	Chlorocebus_sabaeus
ENSACAG00000004381	CPSF6	53	96.831	ENSCPBG00000013322	CPSF6	52	96.831	Chrysemys_picta_bellii
ENSACAG00000004381	CPSF6	64	95.541	ENSCANG00000037294	CPSF6	50	95.455	Colobus_angolensis_palliatus
ENSACAG00000004381	CPSF6	53	95.775	ENSCGRG00001018082	Cpsf6	51	95.775	Cricetulus_griseus_chok1gshd
ENSACAG00000004381	CPSF6	66	54.872	ENSCGRG00001020382	Cpsf7	71	57.143	Cricetulus_griseus_chok1gshd
ENSACAG00000004381	CPSF6	51	91.756	ENSCGRG00000016909	Cpsf6	50	95.455	Cricetulus_griseus_crigri
ENSACAG00000004381	CPSF6	96	47.396	ENSCGRG00000017954	Cpsf7	81	57.143	Cricetulus_griseus_crigri
ENSACAG00000004381	CPSF6	52	43.299	ENSCSEG00000001956	CPSF7	57	44.755	Cynoglossus_semilaevis
ENSACAG00000004381	CPSF6	52	78.169	ENSCSEG00000008967	cpsf6	52	77.817	Cynoglossus_semilaevis
ENSACAG00000004381	CPSF6	81	37.500	ENSCVAG00000007392	CPSF7	66	44.218	Cyprinodon_variegatus
ENSACAG00000004381	CPSF6	52	79.787	ENSDARG00000018618	cpsf6	52	79.787	Danio_rerio
ENSACAG00000004381	CPSF6	78	52.198	ENSDNOG00000018517	CPSF7	84	56.000	Dasypus_novemcinctus
ENSACAG00000004381	CPSF6	53	95.423	ENSDNOG00000015292	CPSF6	51	95.423	Dasypus_novemcinctus
ENSACAG00000004381	CPSF6	66	54.359	ENSEASG00005008196	CPSF7	71	56.571	Equus_asinus_asinus
ENSACAG00000004381	CPSF6	53	95.775	ENSEASG00005008066	CPSF6	52	95.775	Equus_asinus_asinus
ENSACAG00000004381	CPSF6	78	52.198	ENSECAG00000018521	CPSF7	95	56.000	Equus_caballus
ENSACAG00000004381	CPSF6	53	95.775	ENSECAG00000015988	CPSF6	52	95.775	Equus_caballus
ENSACAG00000004381	CPSF6	78	52.198	ENSFCAG00000013677	CPSF7	95	56.000	Felis_catus
ENSACAG00000004381	CPSF6	53	95.423	ENSFCAG00000002855	CPSF6	52	95.423	Felis_catus
ENSACAG00000004381	CPSF6	65	53.763	ENSFALG00000011927	CPSF7	76	56.977	Ficedula_albicollis
ENSACAG00000004381	CPSF6	95	42.911	ENSFDAG00000003919	CPSF7	71	56.571	Fukomys_damarensis
ENSACAG00000004381	CPSF6	52	90.780	ENSFDAG00000002281	CPSF6	51	90.780	Fukomys_damarensis
ENSACAG00000004381	CPSF6	53	74.503	ENSFHEG00000019693	cpsf6	54	71.154	Fundulus_heteroclitus
ENSACAG00000004381	CPSF6	54	91.667	ENSGMOG00000012951	cpsf6	53	91.667	Gadus_morhua
ENSACAG00000004381	CPSF6	64	53.073	ENSGALG00000040962	CPSF7	63	57.225	Gallus_gallus
ENSACAG00000004381	CPSF6	53	96.831	ENSGAGG00000010228	CPSF6	52	96.831	Gopherus_agassizii
ENSACAG00000004381	CPSF6	67	97.126	ENSGGOG00000008211	CPSF6	51	95.775	Gorilla_gorilla
ENSACAG00000004381	CPSF6	95	42.344	ENSHGLG00000019090	-	81	56.571	Heterocephalus_glaber_female
ENSACAG00000004381	CPSF6	53	95.775	ENSHGLG00000000792	CPSF6	52	95.775	Heterocephalus_glaber_female
ENSACAG00000004381	CPSF6	53	90.459	ENSHGLG00100013861	CPSF6	50	95.455	Heterocephalus_glaber_male
ENSACAG00000004381	CPSF6	52	71.228	ENSHCOG00000014555	cpsf6	51	74.737	Hippocampus_comes
ENSACAG00000004381	CPSF6	66	54.359	ENSSTOG00000007708	CPSF7	71	56.571	Ictidomys_tridecemlineatus
ENSACAG00000004381	CPSF6	85	54.359	ENSJJAG00000019390	Cpsf7	81	56.571	Jaculus_jaculus
ENSACAG00000004381	CPSF6	53	89.437	ENSLACG00000008625	CPSF6	51	86.620	Latimeria_chalumnae
ENSACAG00000004381	CPSF6	68	91.279	ENSLOCG00000016190	cpsf6	66	92.353	Lepisosteus_oculatus
ENSACAG00000004381	CPSF6	66	54.872	ENSLAFG00000032084	CPSF7	71	57.143	Loxodonta_africana
ENSACAG00000004381	CPSF6	74	85.648	ENSLAFG00000030413	CPSF6	52	95.775	Loxodonta_africana
ENSACAG00000004381	CPSF6	66	53.846	ENSMFAG00000001401	CPSF7	71	56.000	Macaca_fascicularis
ENSACAG00000004381	CPSF6	67	97.126	ENSMFAG00000045318	CPSF6	52	95.775	Macaca_fascicularis
ENSACAG00000004381	CPSF6	85	53.846	ENSMMUG00000015280	CPSF7	81	56.000	Macaca_mulatta
ENSACAG00000004381	CPSF6	68	95.531	ENSMMUG00000002921	CPSF6	51	95.775	Macaca_mulatta
ENSACAG00000004381	CPSF6	67	97.126	ENSMNEG00000036311	CPSF6	52	95.775	Macaca_nemestrina
ENSACAG00000004381	CPSF6	85	53.846	ENSMNEG00000029585	CPSF7	81	56.000	Macaca_nemestrina
ENSACAG00000004381	CPSF6	66	53.846	ENSMLEG00000031269	CPSF7	69	56.000	Mandrillus_leucophaeus
ENSACAG00000004381	CPSF6	64	95.541	ENSMLEG00000003957	CPSF6	50	95.455	Mandrillus_leucophaeus
ENSACAG00000004381	CPSF6	99	93.446	ENSMGAG00000010552	CPSF6	50	97.348	Meleagris_gallopavo
ENSACAG00000004381	CPSF6	53	95.775	ENSMAUG00000013240	Cpsf6	52	95.775	Mesocricetus_auratus
ENSACAG00000004381	CPSF6	66	54.359	ENSMAUG00000013020	Cpsf7	71	56.571	Mesocricetus_auratus
ENSACAG00000004381	CPSF6	66	54.359	ENSMICG00000013788	CPSF7	71	56.571	Microcebus_murinus
ENSACAG00000004381	CPSF6	67	97.126	ENSMICG00000007385	-	51	95.775	Microcebus_murinus
ENSACAG00000004381	CPSF6	53	95.775	ENSMOCG00000013982	Cpsf6	51	95.775	Microtus_ochrogaster
ENSACAG00000004381	CPSF6	66	54.359	ENSMOCG00000000072	Cpsf7	71	56.571	Microtus_ochrogaster
ENSACAG00000004381	CPSF6	53	96.479	ENSMODG00000007123	CPSF6	52	96.479	Monodelphis_domestica
ENSACAG00000004381	CPSF6	76	87.500	ENSMALG00000014908	cpsf6	78	88.701	Monopterus_albus
ENSACAG00000004381	CPSF6	53	95.775	MGP_CAROLIEiJ_G0015834	Cpsf6	52	95.775	Mus_caroli
ENSACAG00000004381	CPSF6	66	54.359	MGP_CAROLIEiJ_G0022690	Cpsf7	71	56.571	Mus_caroli
ENSACAG00000004381	CPSF6	53	95.070	ENSMUSG00000055531	Cpsf6	52	95.070	Mus_musculus
ENSACAG00000004381	CPSF6	66	54.359	ENSMUSG00000034820	Cpsf7	71	56.571	Mus_musculus
ENSACAG00000004381	CPSF6	83	95.775	MGP_PahariEiJ_G0031253	Cpsf6	56	95.775	Mus_pahari
ENSACAG00000004381	CPSF6	66	54.359	MGP_PahariEiJ_G0014184	Cpsf7	71	56.571	Mus_pahari
ENSACAG00000004381	CPSF6	66	54.359	MGP_SPRETEiJ_G0023604	Cpsf7	71	56.571	Mus_spretus
ENSACAG00000004381	CPSF6	53	95.070	MGP_SPRETEiJ_G0016657	Cpsf6	52	95.070	Mus_spretus
ENSACAG00000004381	CPSF6	62	53.333	ENSMPUG00000014163	CPSF7	66	55.429	Mustela_putorius_furo
ENSACAG00000004381	CPSF6	85	54.359	ENSMLUG00000013278	CPSF7	81	56.571	Myotis_lucifugus
ENSACAG00000004381	CPSF6	52	91.459	ENSMLUG00000004172	-	52	91.459	Myotis_lucifugus
ENSACAG00000004381	CPSF6	70	89.787	ENSMLUG00000028728	-	92	91.204	Myotis_lucifugus
ENSACAG00000004381	CPSF6	53	95.775	ENSNGAG00000015901	Cpsf6	51	95.775	Nannospalax_galili
ENSACAG00000004381	CPSF6	66	54.359	ENSNGAG00000005031	Cpsf7	71	56.571	Nannospalax_galili
ENSACAG00000004381	CPSF6	67	97.126	ENSNLEG00000003798	CPSF6	52	95.775	Nomascus_leucogenys
ENSACAG00000004381	CPSF6	66	53.846	ENSNLEG00000002529	CPSF7	65	56.000	Nomascus_leucogenys
ENSACAG00000004381	CPSF6	53	95.070	ENSODEG00000018399	-	52	95.070	Octodon_degus
ENSACAG00000004381	CPSF6	79	75.497	ENSODEG00000007109	-	66	74.214	Octodon_degus
ENSACAG00000004381	CPSF6	66	52.020	ENSODEG00000002610	CPSF7	71	56.180	Octodon_degus
ENSACAG00000004381	CPSF6	91	74.257	ENSOANG00000005944	CPSF6	50	85.338	Ornithorhynchus_anatinus
ENSACAG00000004381	CPSF6	99	42.171	ENSOCUG00000024726	CPSF7	71	56.000	Oryctolagus_cuniculus
ENSACAG00000004381	CPSF6	75	37.143	ENSORLG00000006495	CPSF7	84	44.275	Oryzias_latipes
ENSACAG00000004381	CPSF6	74	37.143	ENSORLG00020012657	CPSF7	86	41.379	Oryzias_latipes_hni
ENSACAG00000004381	CPSF6	75	37.143	ENSORLG00015011091	CPSF7	59	47.368	Oryzias_latipes_hsok
ENSACAG00000004381	CPSF6	71	35.371	ENSOMEG00000000539	CPSF7	69	40.244	Oryzias_melastigma
ENSACAG00000004381	CPSF6	66	54.359	ENSOGAG00000027958	CPSF7	66	56.571	Otolemur_garnettii
ENSACAG00000004381	CPSF6	66	54.359	ENSOARG00000012937	CPSF7	64	56.000	Ovis_aries
ENSACAG00000004381	CPSF6	66	53.846	ENSPPAG00000028232	CPSF7	70	56.000	Pan_paniscus
ENSACAG00000004381	CPSF6	66	54.359	ENSPPRG00000008538	CPSF7	71	56.571	Panthera_pardus
ENSACAG00000004381	CPSF6	53	95.423	ENSPPRG00000021620	CPSF6	52	95.423	Panthera_pardus
ENSACAG00000004381	CPSF6	66	54.359	ENSPTIG00000021699	CPSF7	71	56.571	Panthera_tigris_altaica
ENSACAG00000004381	CPSF6	66	53.846	ENSPTRG00000003742	CPSF7	71	56.000	Pan_troglodytes
ENSACAG00000004381	CPSF6	67	97.126	ENSPTRG00000005205	CPSF6	51	95.775	Pan_troglodytes
ENSACAG00000004381	CPSF6	94	71.168	ENSPANG00000011641	CPSF6	69	95.305	Papio_anubis
ENSACAG00000004381	CPSF6	66	53.846	ENSPANG00000006037	CPSF7	68	56.000	Papio_anubis
ENSACAG00000004381	CPSF6	62	46.328	ENSPKIG00000018054	CPSF7	79	46.409	Paramormyrops_kingsleyae
ENSACAG00000004381	CPSF6	52	81.979	ENSPKIG00000003081	-	51	82.332	Paramormyrops_kingsleyae
ENSACAG00000004381	CPSF6	85	54.359	ENSPEMG00000012648	Cpsf7	81	56.571	Peromyscus_maniculatus_bairdii
ENSACAG00000004381	CPSF6	66	53.571	ENSPCIG00000002551	CPSF7	84	55.191	Phascolarctos_cinereus
ENSACAG00000004381	CPSF6	53	96.479	ENSPCIG00000019063	CPSF6	52	96.479	Phascolarctos_cinereus
ENSACAG00000004381	CPSF6	53	77.778	ENSPLAG00000005715	cpsf6	52	78.169	Poecilia_latipinna
ENSACAG00000004381	CPSF6	53	77.778	ENSPMEG00000001353	cpsf6	52	78.169	Poecilia_mexicana
ENSACAG00000004381	CPSF6	53	77.778	ENSPREG00000004417	cpsf6	52	78.169	Poecilia_reticulata
ENSACAG00000004381	CPSF6	66	53.846	ENSPPYG00000003188	CPSF7	71	56.000	Pongo_abelii
ENSACAG00000004381	CPSF6	53	95.423	ENSPPYG00000004756	CPSF6	52	95.423	Pongo_abelii
ENSACAG00000004381	CPSF6	68	96.610	ENSPCOG00000024384	CPSF6	51	95.775	Propithecus_coquereli
ENSACAG00000004381	CPSF6	66	54.359	ENSPCOG00000011976	CPSF7	71	56.571	Propithecus_coquereli
ENSACAG00000004381	CPSF6	66	54.359	ENSPVAG00000010675	CPSF7	71	56.571	Pteropus_vampyrus
ENSACAG00000004381	CPSF6	52	79.225	ENSPNAG00000024098	CPSF6	52	79.225	Pygocentrus_nattereri
ENSACAG00000004381	CPSF6	55	45.752	ENSPNAG00000015073	CPSF7	69	48.171	Pygocentrus_nattereri
ENSACAG00000004381	CPSF6	89	53.846	ENSRNOG00000020668	Cpsf7	81	56.395	Rattus_norvegicus
ENSACAG00000004381	CPSF6	53	95.423	ENSRNOG00000005927	Cpsf6	52	95.423	Rattus_norvegicus
ENSACAG00000004381	CPSF6	85	53.846	ENSRBIG00000031429	CPSF7	95	55.429	Rhinopithecus_bieti
ENSACAG00000004381	CPSF6	67	97.126	ENSRBIG00000042827	CPSF6	51	95.775	Rhinopithecus_bieti
ENSACAG00000004381	CPSF6	67	97.126	ENSRROG00000042758	CPSF6	52	95.775	Rhinopithecus_roxellana
ENSACAG00000004381	CPSF6	66	53.846	ENSRROG00000045009	CPSF7	71	56.000	Rhinopithecus_roxellana
ENSACAG00000004381	CPSF6	66	53.846	ENSSBOG00000018431	CPSF7	71	56.000	Saimiri_boliviensis_boliviensis
ENSACAG00000004381	CPSF6	99	41.204	ENSSFOG00015010288	cpsf7	78	40.206	Scleropages_formosus
ENSACAG00000004381	CPSF6	53	77.778	ENSSFOG00015015803	CPSF6	51	77.113	Scleropages_formosus
ENSACAG00000004381	CPSF6	53	95.775	ENSSSCG00000038031	CPSF6	52	95.775	Sus_scrofa
ENSACAG00000004381	CPSF6	78	52.198	ENSSSCG00000013083	CPSF7	84	56.000	Sus_scrofa
ENSACAG00000004381	CPSF6	64	51.111	ENSTGUG00000006513	CPSF7	74	56.614	Taeniopygia_guttata
ENSACAG00000004381	CPSF6	62	53.846	ENSTTRG00000011085	CPSF7	70	56.571	Tursiops_truncatus
ENSACAG00000004381	CPSF6	66	54.359	ENSUAMG00000017809	CPSF7	71	56.571	Ursus_americanus
ENSACAG00000004381	CPSF6	85	54.359	ENSUMAG00000011825	CPSF7	81	56.571	Ursus_maritimus
ENSACAG00000004381	CPSF6	78	52.198	ENSVVUG00000004939	CPSF7	84	56.000	Vulpes_vulpes
ENSACAG00000004381	CPSF6	98	40.993	ENSXETG00000006715	cpsf7	54	44.633	Xenopus_tropicalis
ENSACAG00000004381	CPSF6	53	77.778	ENSXCOG00000013423	cpsf6	52	78.169	Xiphophorus_couchianus