EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000004985 (Gene tree)
Gene ID: 100562142
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 48674 bases
Position: chr3:21894620-21943293
Accession: 100562142
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000004905	XRN_N	PF03159.18	3.6e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000005017	XRN1-201	5682	XM_008106208	ENSACAP00000004905	1769 (aa)	XP_008104415	G1KDG4

Gene Model

Click here to download ENSACAG00000004985's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03008	Ribosome biogenesis in eukaryotes	KEGG
acs03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000004985's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000004985	XRN1	100	72.185	ENSG00000114127	XRN1	96	97.087	Homo_sapiens
ENSACAG00000004985	XRN1	92	71.842	ENSAPOG00000000622	xrn1	99	71.704	Acanthochromis_polyacanthus
ENSACAG00000004985	XRN1	100	72.472	ENSAMEG00000012538	XRN1	100	72.978	Ailuropoda_melanoleuca
ENSACAG00000004985	XRN1	94	70.109	ENSACIG00000001057	xrn1	98	72.019	Amphilophus_citrinellus
ENSACAG00000004985	XRN1	94	69.231	ENSAOCG00000014097	xrn1	98	69.099	Amphiprion_ocellaris
ENSACAG00000004985	XRN1	100	59.703	ENSAPEG00000006620	xrn1	91	69.565	Amphiprion_percula
ENSACAG00000004985	XRN1	96	68.437	ENSATEG00000009752	xrn1	100	68.361	Anabas_testudineus
ENSACAG00000004985	XRN1	99	77.462	ENSAPLG00000004905	XRN1	100	77.462	Anas_platyrhynchos
ENSACAG00000004985	XRN1	100	72.691	ENSANAG00000029013	XRN1	99	84.303	Aotus_nancymaae
ENSACAG00000004985	XRN1	100	59.468	ENSACLG00000004806	xrn1	99	59.603	Astatotilapia_calliptera
ENSACAG00000004985	XRN1	99	59.741	ENSAMXG00000019370	xrn1	95	95.146	Astyanax_mexicanus
ENSACAG00000004985	XRN1	100	71.548	ENSBTAG00000011524	XRN1	100	72.051	Bos_taurus
ENSACAG00000004985	XRN1	67	38.110	WBGene00012730	xrn-1	78	38.414	Caenorhabditis_elegans
ENSACAG00000004985	XRN1	100	72.297	ENSCJAG00000001872	XRN1	99	73.808	Callithrix_jacchus
ENSACAG00000004985	XRN1	100	73.382	ENSCAFG00000007783	XRN1	100	73.607	Canis_familiaris
ENSACAG00000004985	XRN1	100	73.438	ENSCAFG00020009120	XRN1	99	82.938	Canis_lupus_dingo
ENSACAG00000004985	XRN1	99	72.958	ENSCHIG00000019192	XRN1	99	73.408	Capra_hircus
ENSACAG00000004985	XRN1	100	72.538	ENSTSYG00000002705	XRN1	100	72.819	Carlito_syrichta
ENSACAG00000004985	XRN1	100	72.691	ENSCCAG00000034800	XRN1	99	86.032	Cebus_capucinus
ENSACAG00000004985	XRN1	100	72.635	ENSCATG00000041794	XRN1	100	72.635	Cercocebus_atys
ENSACAG00000004985	XRN1	100	72.128	ENSCLAG00000001451	XRN1	99	86.032	Chinchilla_lanigera
ENSACAG00000004985	XRN1	100	72.163	ENSCSAG00000011265	XRN1	100	72.163	Chlorocebus_sabaeus
ENSACAG00000004985	XRN1	59	97.403	ENSCHOG00000013961	-	62	97.403	Choloepus_hoffmanni
ENSACAG00000004985	XRN1	67	45.304	ENSCSAVG00000008584	-	98	45.067	Ciona_savignyi
ENSACAG00000004985	XRN1	100	72.354	ENSCANG00000037495	XRN1	99	86.032	Colobus_angolensis_palliatus
ENSACAG00000004985	XRN1	100	72.640	ENSCGRG00001019411	Xrn1	99	86.190	Cricetulus_griseus_chok1gshd
ENSACAG00000004985	XRN1	100	72.640	ENSCGRG00000012464	Xrn1	99	86.190	Cricetulus_griseus_crigri
ENSACAG00000004985	XRN1	95	64.400	ENSCSEG00000021285	xrn1	94	96.154	Cynoglossus_semilaevis
ENSACAG00000004985	XRN1	64	72.085	ENSCVAG00000013089	xrn1	99	72.085	Cyprinodon_variegatus
ENSACAG00000004985	XRN1	99	61.680	ENSDARG00000091652	xrn1	98	79.493	Danio_rerio
ENSACAG00000004985	XRN1	100	71.092	ENSDORG00000013833	Xrn1	100	71.597	Dipodomys_ordii
ENSACAG00000004985	XRN1	67	40.263	FBgn0020261	pcm	72	39.967	Drosophila_melanogaster
ENSACAG00000004985	XRN1	86	90.909	ENSETEG00000003978	XRN1	88	91.870	Echinops_telfairi
ENSACAG00000004985	XRN1	100	72.563	ENSEASG00005002687	XRN1	99	85.714	Equus_asinus_asinus
ENSACAG00000004985	XRN1	100	71.237	ENSECAG00000008301	XRN1	100	71.796	Equus_caballus
ENSACAG00000004985	XRN1	89	74.023	ENSEEUG00000011323	XRN1	92	74.121	Erinaceus_europaeus
ENSACAG00000004985	XRN1	100	61.027	ENSELUG00000000169	xrn1	100	61.049	Esox_lucius
ENSACAG00000004985	XRN1	100	68.880	ENSFCAG00000027589	XRN1	99	87.281	Felis_catus
ENSACAG00000004985	XRN1	100	78.227	ENSFALG00000007021	XRN1	100	78.339	Ficedula_albicollis
ENSACAG00000004985	XRN1	100	71.894	ENSFDAG00000020494	XRN1	99	85.397	Fukomys_damarensis
ENSACAG00000004985	XRN1	81	67.494	ENSGMOG00000006396	xrn1	83	68.456	Gadus_morhua
ENSACAG00000004985	XRN1	100	78.383	ENSGALG00000002706	XRN1	100	78.383	Gallus_gallus
ENSACAG00000004985	XRN1	100	57.930	ENSGACG00000014328	xrn1	100	58.379	Gasterosteus_aculeatus
ENSACAG00000004985	XRN1	94	80.845	ENSGAGG00000017535	XRN1	99	80.845	Gopherus_agassizii
ENSACAG00000004985	XRN1	100	72.241	ENSGGOG00000008047	XRN1	100	72.410	Gorilla_gorilla
ENSACAG00000004985	XRN1	94	69.279	ENSHBUG00000005908	xrn1	98	72.671	Haplochromis_burtoni
ENSACAG00000004985	XRN1	100	72.472	ENSHGLG00000014476	XRN1	99	86.032	Heterocephalus_glaber_female
ENSACAG00000004985	XRN1	100	72.528	ENSHGLG00100015130	XRN1	99	86.032	Heterocephalus_glaber_male
ENSACAG00000004985	XRN1	91	71.452	ENSHCOG00000014062	xrn1	99	71.255	Hippocampus_comes
ENSACAG00000004985	XRN1	97	70.144	ENSIPUG00000015229	xrn1	99	60.589	Ictalurus_punctatus
ENSACAG00000004985	XRN1	100	72.947	ENSSTOG00000013552	XRN1	99	85.556	Ictidomys_tridecemlineatus
ENSACAG00000004985	XRN1	99	70.826	ENSJJAG00000010863	Xrn1	99	84.793	Jaculus_jaculus
ENSACAG00000004985	XRN1	92	67.704	ENSKMAG00000021356	xrn1	94	75.636	Kryptolebias_marmoratus
ENSACAG00000004985	XRN1	95	70.195	ENSLBEG00000018656	xrn1	97	97.087	Labrus_bergylta
ENSACAG00000004985	XRN1	100	68.809	ENSLACG00000009020	XRN1	100	68.624	Latimeria_chalumnae
ENSACAG00000004985	XRN1	100	65.045	ENSLOCG00000007944	xrn1	100	64.913	Lepisosteus_oculatus
ENSACAG00000004985	XRN1	60	83.551	ENSLAFG00000015426	XRN1	100	83.645	Loxodonta_africana
ENSACAG00000004985	XRN1	100	72.635	ENSMFAG00000032599	XRN1	100	72.635	Macaca_fascicularis
ENSACAG00000004985	XRN1	100	72.635	ENSMMUG00000014038	XRN1	100	72.635	Macaca_mulatta
ENSACAG00000004985	XRN1	100	72.579	ENSMNEG00000034217	XRN1	100	72.579	Macaca_nemestrina
ENSACAG00000004985	XRN1	92	70.054	ENSMAMG00000013219	xrn1	92	77.707	Mastacembelus_armatus
ENSACAG00000004985	XRN1	100	59.413	ENSMZEG00005015099	xrn1	99	59.547	Maylandia_zebra
ENSACAG00000004985	XRN1	99	75.569	ENSMGAG00000006333	XRN1	100	75.569	Meleagris_gallopavo
ENSACAG00000004985	XRN1	100	72.569	ENSMICG00000048948	XRN1	96	97.087	Microcebus_murinus
ENSACAG00000004985	XRN1	54	84.494	ENSMOCG00000008665	Xrn1	99	85.556	Microtus_ochrogaster
ENSACAG00000004985	XRN1	100	72.303	ENSMODG00000021236	XRN1	100	72.520	Monodelphis_domestica
ENSACAG00000004985	XRN1	94	66.770	ENSMALG00000004098	xrn1	98	67.237	Monopterus_albus
ENSACAG00000004985	XRN1	96	84.554	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSACAG00000004985	XRN1	100	71.059	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSACAG00000004985	XRN1	100	71.775	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSACAG00000004985	XRN1	100	71.171	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSACAG00000004985	XRN1	100	72.163	ENSMPUG00000012040	XRN1	100	72.443	Mustela_putorius_furo
ENSACAG00000004985	XRN1	100	71.822	ENSMLUG00000016885	XRN1	100	71.822	Myotis_lucifugus
ENSACAG00000004985	XRN1	54	82.635	ENSNGAG00000023964	Xrn1	99	82.635	Nannospalax_galili
ENSACAG00000004985	XRN1	100	72.523	ENSNLEG00000004726	XRN1	100	72.748	Nomascus_leucogenys
ENSACAG00000004985	XRN1	69	97.938	ENSMEUG00000014473	-	72	98.058	Notamacropus_eugenii
ENSACAG00000004985	XRN1	70	79.577	ENSOPRG00000007337	-	72	79.577	Ochotona_princeps
ENSACAG00000004985	XRN1	100	59.649	ENSONIG00000016673	xrn1	99	63.465	Oreochromis_niloticus
ENSACAG00000004985	XRN1	92	70.012	ENSOANG00000006735	XRN1	100	70.578	Ornithorhynchus_anatinus
ENSACAG00000004985	XRN1	100	72.697	ENSOCUG00000001861	XRN1	100	72.753	Oryctolagus_cuniculus
ENSACAG00000004985	XRN1	100	70.908	ENSORLG00000013005	xrn1	98	69.961	Oryzias_latipes
ENSACAG00000004985	XRN1	100	70.675	ENSORLG00020005559	xrn1	100	60.278	Oryzias_latipes_hni
ENSACAG00000004985	XRN1	100	70.753	ENSORLG00015022523	xrn1	100	60.389	Oryzias_latipes_hsok
ENSACAG00000004985	XRN1	100	71.118	ENSOMEG00000015397	xrn1	100	72.302	Oryzias_melastigma
ENSACAG00000004985	XRN1	100	70.056	ENSOGAG00000000170	XRN1	100	70.112	Otolemur_garnettii
ENSACAG00000004985	XRN1	99	72.707	ENSOARG00000006343	XRN1	99	72.875	Ovis_aries
ENSACAG00000004985	XRN1	100	72.241	ENSPPAG00000010180	XRN1	100	72.523	Pan_paniscus
ENSACAG00000004985	XRN1	100	72.482	ENSPPRG00000007125	XRN1	100	73.044	Panthera_pardus
ENSACAG00000004985	XRN1	100	72.482	ENSPTIG00000021081	XRN1	100	73.044	Panthera_tigris_altaica
ENSACAG00000004985	XRN1	100	72.241	ENSPTRG00000015482	XRN1	100	72.523	Pan_troglodytes
ENSACAG00000004985	XRN1	100	72.523	ENSPANG00000010638	XRN1	100	72.523	Papio_anubis
ENSACAG00000004985	XRN1	100	77.790	ENSPSIG00000018050	XRN1	100	77.790	Pelodiscus_sinensis
ENSACAG00000004985	XRN1	54	76.332	ENSPMGG00000002648	xrn1	98	78.527	Periophthalmus_magnuspinnatus
ENSACAG00000004985	XRN1	54	84.335	ENSPEMG00000020610	Xrn1	99	85.556	Peromyscus_maniculatus_bairdii
ENSACAG00000004985	XRN1	62	50.042	ENSPMAG00000002975	xrn1	99	50.042	Petromyzon_marinus
ENSACAG00000004985	XRN1	100	80.670	ENSPCIG00000028735	XRN1	99	86.328	Phascolarctos_cinereus
ENSACAG00000004985	XRN1	91	62.439	ENSPFOG00000013932	xrn1	99	62.653	Poecilia_formosa
ENSACAG00000004985	XRN1	91	62.508	ENSPLAG00000021653	xrn1	99	62.738	Poecilia_latipinna
ENSACAG00000004985	XRN1	89	63.191	ENSPMEG00000003076	xrn1	95	63.277	Poecilia_mexicana
ENSACAG00000004985	XRN1	97	67.893	ENSPREG00000021147	xrn1	100	67.739	Poecilia_reticulata
ENSACAG00000004985	XRN1	100	71.772	ENSPPYG00000014172	XRN1	100	71.940	Pongo_abelii
ENSACAG00000004985	XRN1	88	68.401	ENSPCAG00000005638	XRN1	96	68.401	Procavia_capensis
ENSACAG00000004985	XRN1	100	72.594	ENSPCOG00000013089	XRN1	99	85.397	Propithecus_coquereli
ENSACAG00000004985	XRN1	94	80.606	ENSPVAG00000016265	XRN1	96	80.606	Pteropus_vampyrus
ENSACAG00000004985	XRN1	94	69.861	ENSPNYG00000010570	xrn1	99	69.838	Pundamilia_nyererei
ENSACAG00000004985	XRN1	99	66.789	ENSPNAG00000023531	xrn1	99	66.789	Pygocentrus_nattereri
ENSACAG00000004985	XRN1	100	72.032	ENSRNOG00000042951	Xrn1	100	72.425	Rattus_norvegicus
ENSACAG00000004985	XRN1	100	72.072	ENSRBIG00000041227	XRN1	100	72.072	Rhinopithecus_bieti
ENSACAG00000004985	XRN1	64	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSACAG00000004985	XRN1	100	72.523	ENSSBOG00000029561	XRN1	100	72.523	Saimiri_boliviensis_boliviensis
ENSACAG00000004985	XRN1	99	73.576	ENSSHAG00000016207	XRN1	100	73.804	Sarcophilus_harrisii
ENSACAG00000004985	XRN1	100	59.091	ENSSFOG00015024211	xrn1	100	59.091	Scleropages_formosus
ENSACAG00000004985	XRN1	96	70.163	ENSSMAG00000016534	xrn1	100	68.864	Scophthalmus_maximus
ENSACAG00000004985	XRN1	85	71.590	ENSSDUG00000010306	xrn1	97	71.590	Seriola_dumerili
ENSACAG00000004985	XRN1	96	67.399	ENSSLDG00000021543	xrn1	100	67.399	Seriola_lalandi_dorsalis
ENSACAG00000004985	XRN1	64	75.748	ENSSARG00000007741	-	82	75.748	Sorex_araneus
ENSACAG00000004985	XRN1	100	77.079	ENSTGUG00000008498	XRN1	100	77.191	Taeniopygia_guttata
ENSACAG00000004985	XRN1	95	68.323	ENSTRUG00000004895	xrn1	96	75.796	Takifugu_rubripes
ENSACAG00000004985	XRN1	95	65.630	ENSTNIG00000017615	xrn1	98	66.085	Tetraodon_nigroviridis
ENSACAG00000004985	XRN1	76	91.105	ENSTBEG00000003256	XRN1	85	89.948	Tupaia_belangeri
ENSACAG00000004985	XRN1	100	67.859	ENSTTRG00000012914	XRN1	100	68.083	Tursiops_truncatus
ENSACAG00000004985	XRN1	100	71.429	ENSUAMG00000001608	XRN1	99	82.934	Ursus_americanus
ENSACAG00000004985	XRN1	100	73.172	ENSUMAG00000013625	XRN1	100	73.622	Ursus_maritimus
ENSACAG00000004985	XRN1	100	69.089	ENSVPAG00000004690	XRN1	100	69.480	Vicugna_pacos
ENSACAG00000004985	XRN1	100	73.270	ENSVVUG00000024461	XRN1	99	86.032	Vulpes_vulpes
ENSACAG00000004985	XRN1	100	65.336	ENSXETG00000000619	xrn1	99	88.021	Xenopus_tropicalis
ENSACAG00000004985	XRN1	94	71.521	ENSXCOG00000007917	xrn1	99	71.360	Xiphophorus_couchianus
ENSACAG00000004985	XRN1	89	70.796	ENSXMAG00000018320	xrn1	99	71.199	Xiphophorus_maculatus