EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACAG00000005542 (Gene tree)
Gene ID: 100555961
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Minus strand
Length: 3712 bases
Position: chrGL344193.1:34598-38309
Accession: 100555961
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000005429	RRM_1	PF00076.22	2.3e-34	1	2
ENSACAP00000005429	RRM_1	PF00076.22	2.3e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000005547	-	744	XM_008124127	ENSACAP00000005429	247 (aa)	XP_008122334	H9GAB8

Gene Model

Click here to download ENSACAG00000005542's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03040	Spliceosome	KEGG
acs05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000005542's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACAG00000005542	-	78	41.791	ENSACAG00000002061	SRSF6	56	43.204
ENSACAG00000005542	-	83	39.352	ENSACAG00000005143	SRSF5	81	37.557
ENSACAG00000005542	-	66	43.429	ENSACAG00000029015	-	63	41.420
ENSACAG00000005542	-	89	68.468	ENSACAG00000002877	SRSF9	76	72.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000005542	-	100	98.387	ENSG00000136450	SRSF1	100	98.462	Homo_sapiens
ENSACAG00000005542	-	79	89.163	ENSAPOG00000008542	-	81	87.685	Acanthochromis_polyacanthus
ENSACAG00000005542	-	78	90.674	ENSAPOG00000002748	-	78	88.083	Acanthochromis_polyacanthus
ENSACAG00000005542	-	100	95.565	ENSAMEG00000002635	SRSF1	100	95.565	Ailuropoda_melanoleuca
ENSACAG00000005542	-	78	90.674	ENSACIG00000008091	srsf1a	83	88.601	Amphilophus_citrinellus
ENSACAG00000005542	-	79	89.163	ENSAOCG00000000337	-	82	87.685	Amphiprion_ocellaris
ENSACAG00000005542	-	78	91.192	ENSAOCG00000010671	-	83	89.119	Amphiprion_ocellaris
ENSACAG00000005542	-	78	91.192	ENSAPEG00000009915	-	83	89.119	Amphiprion_percula
ENSACAG00000005542	-	79	89.163	ENSAPEG00000023352	-	81	87.685	Amphiprion_percula
ENSACAG00000005542	-	82	85.222	ENSATEG00000021567	-	81	86.802	Anabas_testudineus
ENSACAG00000005542	-	78	91.192	ENSATEG00000022403	-	77	89.119	Anabas_testudineus
ENSACAG00000005542	-	81	72.362	ENSANAG00000025417	-	75	70.408	Aotus_nancymaae
ENSACAG00000005542	-	99	98.374	ENSANAG00000020583	-	99	97.222	Aotus_nancymaae
ENSACAG00000005542	-	94	92.469	ENSAMXG00000035996	srsf1a	79	93.970	Astyanax_mexicanus
ENSACAG00000005542	-	74	86.408	ENSAMXG00000024373	-	94	85.990	Astyanax_mexicanus
ENSACAG00000005542	-	100	98.387	ENSBTAG00000014766	SRSF1	100	98.387	Bos_taurus
ENSACAG00000005542	-	99	98.374	ENSCJAG00000041713	-	99	97.222	Callithrix_jacchus
ENSACAG00000005542	-	79	89.796	ENSCJAG00000008111	-	88	89.340	Callithrix_jacchus
ENSACAG00000005542	-	99	98.374	ENSCAFG00000017430	SRSF1	97	98.374	Canis_familiaris
ENSACAG00000005542	-	99	98.374	ENSCAFG00020025632	-	97	98.374	Canis_lupus_dingo
ENSACAG00000005542	-	100	98.387	ENSCHIG00000010787	SRSF1	100	98.387	Capra_hircus
ENSACAG00000005542	-	99	98.374	ENSTSYG00000013899	-	99	97.222	Carlito_syrichta
ENSACAG00000005542	-	100	98.387	ENSCPOG00000032681	-	100	98.387	Cavia_porcellus
ENSACAG00000005542	-	100	98.387	ENSCCAG00000029484	-	100	98.387	Cebus_capucinus
ENSACAG00000005542	-	99	98.374	ENSCATG00000042294	-	99	97.222	Cercocebus_atys
ENSACAG00000005542	-	100	98.387	ENSCLAG00000014707	-	100	98.387	Chinchilla_lanigera
ENSACAG00000005542	-	99	97.561	ENSCSAG00000005642	-	97	97.561	Chlorocebus_sabaeus
ENSACAG00000005542	-	100	98.387	ENSCHOG00000001899	SRSF1	100	98.387	Choloepus_hoffmanni
ENSACAG00000005542	-	100	99.597	ENSCPBG00000009851	-	100	99.597	Chrysemys_picta_bellii
ENSACAG00000005542	-	99	98.374	ENSCANG00000029726	-	99	97.222	Colobus_angolensis_palliatus
ENSACAG00000005542	-	99	98.374	ENSCGRG00001000670	Srsf1	97	98.374	Cricetulus_griseus_chok1gshd
ENSACAG00000005542	-	100	98.387	ENSCGRG00000005590	Srsf1	100	98.387	Cricetulus_griseus_crigri
ENSACAG00000005542	-	78	92.347	ENSCSEG00000014272	-	81	87.565	Cynoglossus_semilaevis
ENSACAG00000005542	-	79	83.019	ENSCSEG00000009973	-	81	82.075	Cynoglossus_semilaevis
ENSACAG00000005542	-	78	88.718	ENSCVAG00000005458	-	91	88.525	Cyprinodon_variegatus
ENSACAG00000005542	-	78	91.192	ENSCVAG00000018617	-	78	89.119	Cyprinodon_variegatus
ENSACAG00000005542	-	99	92.941	ENSDARG00000057691	srsf1a	99	92.941	Danio_rerio
ENSACAG00000005542	-	99	97.551	ENSDARG00000017843	srsf1b	99	97.551	Danio_rerio
ENSACAG00000005542	-	99	98.374	ENSDNOG00000011737	-	97	98.374	Dasypus_novemcinctus
ENSACAG00000005542	-	100	98.387	ENSDORG00000015082	Srsf1	100	98.387	Dipodomys_ordii
ENSACAG00000005542	-	74	96.739	ENSETEG00000005349	-	63	96.739	Echinops_telfairi
ENSACAG00000005542	-	99	98.374	ENSEASG00005002922	-	97	98.374	Equus_asinus_asinus
ENSACAG00000005542	-	100	98.387	ENSECAG00000016654	SRSF1	100	98.387	Equus_caballus
ENSACAG00000005542	-	74	97.826	ENSEEUG00000009255	-	63	97.826	Erinaceus_europaeus
ENSACAG00000005542	-	78	94.330	ENSELUG00000021646	srsf1a	77	90.722	Esox_lucius
ENSACAG00000005542	-	99	98.374	ENSFCAG00000002250	-	97	98.374	Felis_catus
ENSACAG00000005542	-	99	82.520	ENSFALG00000005062	-	97	82.520	Ficedula_albicollis
ENSACAG00000005542	-	100	98.387	ENSFDAG00000010646	-	100	98.387	Fukomys_damarensis
ENSACAG00000005542	-	78	91.192	ENSFHEG00000003174	srsf1a	83	89.119	Fundulus_heteroclitus
ENSACAG00000005542	-	80	89.899	ENSGMOG00000014787	-	80	87.047	Gadus_morhua
ENSACAG00000005542	-	100	99.597	ENSGALG00000005525	SRSF1	100	99.597	Gallus_gallus
ENSACAG00000005542	-	79	86.294	ENSGACG00000020621	srsf1b	80	84.264	Gasterosteus_aculeatus
ENSACAG00000005542	-	99	99.593	ENSGAGG00000022965	-	97	99.593	Gopherus_agassizii
ENSACAG00000005542	-	99	98.374	ENSGGOG00000004386	SRSF1	99	97.222	Gorilla_gorilla
ENSACAG00000005542	-	78	90.674	ENSHBUG00000016788	srsf1a	80	88.601	Haplochromis_burtoni
ENSACAG00000005542	-	87	98.140	ENSHGLG00000000600	-	100	98.140	Heterocephalus_glaber_female
ENSACAG00000005542	-	87	98.140	ENSHGLG00000000669	-	100	98.140	Heterocephalus_glaber_female
ENSACAG00000005542	-	100	98.387	ENSHGLG00100016906	-	100	98.387	Heterocephalus_glaber_male
ENSACAG00000005542	-	78	86.294	ENSHCOG00000018918	srsf1a	77	86.802	Hippocampus_comes
ENSACAG00000005542	-	100	96.774	ENSIPUG00000008750	srsf1b	100	96.774	Ictalurus_punctatus
ENSACAG00000005542	-	94	92.050	ENSIPUG00000017039	srsf1a	79	94.472	Ictalurus_punctatus
ENSACAG00000005542	-	100	98.387	ENSSTOG00000000243	-	100	98.387	Ictidomys_tridecemlineatus
ENSACAG00000005542	-	51	91.339	ENSJJAG00000014464	-	95	87.402	Jaculus_jaculus
ENSACAG00000005542	-	100	98.387	ENSJJAG00000000102	-	100	98.387	Jaculus_jaculus
ENSACAG00000005542	-	78	91.192	ENSKMAG00000019232	srsf1a	78	87.565	Kryptolebias_marmoratus
ENSACAG00000005542	-	79	86.000	ENSLBEG00000015294	-	80	87.000	Labrus_bergylta
ENSACAG00000005542	-	78	92.228	ENSLBEG00000020864	-	83	90.155	Labrus_bergylta
ENSACAG00000005542	-	99	96.735	ENSLACG00000014160	srsf1a	92	96.735	Latimeria_chalumnae
ENSACAG00000005542	-	100	97.984	ENSLOCG00000005994	srsf1a	100	97.984	Lepisosteus_oculatus
ENSACAG00000005542	-	100	98.387	ENSLAFG00000025743	SRSF1	100	98.387	Loxodonta_africana
ENSACAG00000005542	-	100	98.387	ENSMFAG00000040003	-	100	98.387	Macaca_fascicularis
ENSACAG00000005542	-	99	98.374	ENSMMUG00000004725	SRSF1	99	97.222	Macaca_mulatta
ENSACAG00000005542	-	100	94.758	ENSMMUG00000003260	-	95	94.898	Macaca_mulatta
ENSACAG00000005542	-	99	98.374	ENSMNEG00000027680	-	99	97.222	Macaca_nemestrina
ENSACAG00000005542	-	100	94.355	ENSMNEG00000015983	-	78	94.416	Macaca_nemestrina
ENSACAG00000005542	-	100	91.532	ENSMLEG00000015243	-	77	90.863	Mandrillus_leucophaeus
ENSACAG00000005542	-	100	98.387	ENSMLEG00000040509	SRSF1	100	98.387	Mandrillus_leucophaeus
ENSACAG00000005542	-	78	91.192	ENSMAMG00000018454	-	78	89.119	Mastacembelus_armatus
ENSACAG00000005542	-	79	88.325	ENSMAMG00000019687	-	80	85.787	Mastacembelus_armatus
ENSACAG00000005542	-	79	93.909	ENSMAMG00000019691	-	81	90.863	Mastacembelus_armatus
ENSACAG00000005542	-	100	98.387	ENSMAUG00000021845	Srsf1	100	98.387	Mesocricetus_auratus
ENSACAG00000005542	-	99	98.374	ENSMICG00000013639	-	99	97.222	Microcebus_murinus
ENSACAG00000005542	-	100	98.387	ENSMOCG00000001996	Srsf1	100	98.387	Microtus_ochrogaster
ENSACAG00000005542	-	78	91.710	ENSMMOG00000014354	srsf1a	83	89.637	Mola_mola
ENSACAG00000005542	-	74	97.838	ENSMODG00000014781	-	63	97.838	Monodelphis_domestica
ENSACAG00000005542	-	82	80.882	ENSMALG00000007763	-	79	80.711	Monopterus_albus
ENSACAG00000005542	-	78	90.674	ENSMALG00000017129	-	75	87.565	Monopterus_albus
ENSACAG00000005542	-	100	98.387	MGP_CAROLIEiJ_G0016943	Srsf1	100	98.387	Mus_caroli
ENSACAG00000005542	-	100	98.387	ENSMUSG00000018379	Srsf1	100	98.387	Mus_musculus
ENSACAG00000005542	-	100	98.387	MGP_PahariEiJ_G0018074	Srsf1	100	98.387	Mus_pahari
ENSACAG00000005542	-	100	98.387	MGP_SPRETEiJ_G0017790	Srsf1	100	98.387	Mus_spretus
ENSACAG00000005542	-	100	98.387	ENSMPUG00000015369	SRSF1	100	98.387	Mustela_putorius_furo
ENSACAG00000005542	-	82	90.148	ENSMLUG00000023995	-	79	88.832	Myotis_lucifugus
ENSACAG00000005542	-	100	98.387	ENSMLUG00000011040	SRSF1	100	98.387	Myotis_lucifugus
ENSACAG00000005542	-	100	98.387	ENSNGAG00000011395	Srsf1	100	98.387	Nannospalax_galili
ENSACAG00000005542	-	100	81.048	ENSNBRG00000008041	srsf1b	80	82.234	Neolamprologus_brichardi
ENSACAG00000005542	-	99	98.374	ENSNLEG00000008088	-	99	97.222	Nomascus_leucogenys
ENSACAG00000005542	-	51	97.638	ENSMEUG00000002783	-	100	97.638	Notamacropus_eugenii
ENSACAG00000005542	-	74	98.361	ENSOPRG00000001234	-	100	98.361	Ochotona_princeps
ENSACAG00000005542	-	100	97.984	ENSODEG00000011481	-	100	97.984	Octodon_degus
ENSACAG00000005542	-	96	90.717	ENSONIG00000004860	-	81	90.863	Oreochromis_niloticus
ENSACAG00000005542	-	78	90.674	ENSONIG00000013160	-	77	88.601	Oreochromis_niloticus
ENSACAG00000005542	-	100	69.841	ENSOCUG00000010894	-	77	71.282	Oryctolagus_cuniculus
ENSACAG00000005542	-	78	91.192	ENSORLG00000004580	srsf1a	78	89.119	Oryzias_latipes
ENSACAG00000005542	-	78	91.192	ENSORLG00020009456	srsf1a	83	89.119	Oryzias_latipes_hni
ENSACAG00000005542	-	78	91.192	ENSORLG00015014384	srsf1a	83	89.119	Oryzias_latipes_hsok
ENSACAG00000005542	-	71	89.205	ENSOMEG00000004106	srsf1a	71	86.932	Oryzias_melastigma
ENSACAG00000005542	-	100	98.387	ENSOGAG00000025950	-	100	98.387	Otolemur_garnettii
ENSACAG00000005542	-	100	94.332	ENSOARG00000008323	SRSF1	100	94.332	Ovis_aries
ENSACAG00000005542	-	100	98.387	ENSPPAG00000043403	-	100	98.387	Pan_paniscus
ENSACAG00000005542	-	100	98.387	ENSPPRG00000004238	-	100	98.387	Panthera_pardus
ENSACAG00000005542	-	99	98.374	ENSPTRG00000049077	SRSF1	99	97.222	Pan_troglodytes
ENSACAG00000005542	-	99	98.374	ENSPANG00000022305	-	99	97.222	Papio_anubis
ENSACAG00000005542	-	99	75.510	ENSPANG00000030275	-	75	69.744	Papio_anubis
ENSACAG00000005542	-	99	95.918	ENSPKIG00000007204	srsf1a	99	95.918	Paramormyrops_kingsleyae
ENSACAG00000005542	-	100	96.774	ENSPKIG00000012857	srsf1b	100	96.774	Paramormyrops_kingsleyae
ENSACAG00000005542	-	79	92.857	ENSPSIG00000009000	-	78	100.000	Pelodiscus_sinensis
ENSACAG00000005542	-	96	84.100	ENSPMGG00000005467	-	78	83.420	Periophthalmus_magnuspinnatus
ENSACAG00000005542	-	78	88.384	ENSPMGG00000013112	-	79	90.404	Periophthalmus_magnuspinnatus
ENSACAG00000005542	-	100	98.387	ENSPEMG00000021416	Srsf1	100	98.387	Peromyscus_maniculatus_bairdii
ENSACAG00000005542	-	100	98.394	ENSPCIG00000006076	-	100	98.394	Phascolarctos_cinereus
ENSACAG00000005542	-	79	88.889	ENSPFOG00000018325	-	70	88.660	Poecilia_formosa
ENSACAG00000005542	-	79	88.889	ENSPLAG00000008416	srsf1b	79	88.660	Poecilia_latipinna
ENSACAG00000005542	-	79	88.889	ENSPMEG00000002388	-	79	88.660	Poecilia_mexicana
ENSACAG00000005542	-	78	91.192	ENSPREG00000009667	srsf1a	78	89.119	Poecilia_reticulata
ENSACAG00000005542	-	100	98.387	ENSPPYG00000008240	SRSF1	100	98.387	Pongo_abelii
ENSACAG00000005542	-	100	98.387	ENSPCAG00000005199	SRSF1	100	98.387	Procavia_capensis
ENSACAG00000005542	-	100	98.387	ENSPCOG00000023654	-	100	98.387	Propithecus_coquereli
ENSACAG00000005542	-	80	75.743	ENSPCOG00000025736	-	95	75.510	Propithecus_coquereli
ENSACAG00000005542	-	75	99.174	ENSPVAG00000000519	-	75	99.174	Pteropus_vampyrus
ENSACAG00000005542	-	94	94.017	ENSPNAG00000022241	srsf1a	78	91.237	Pygocentrus_nattereri
ENSACAG00000005542	-	100	95.161	ENSPNAG00000014601	srsf1b	100	95.161	Pygocentrus_nattereri
ENSACAG00000005542	-	100	98.387	ENSRNOG00000050323	Srsf1	100	98.387	Rattus_norvegicus
ENSACAG00000005542	-	99	98.374	ENSRBIG00000034445	-	99	97.222	Rhinopithecus_bieti
ENSACAG00000005542	-	100	98.387	ENSRROG00000041506	-	100	98.387	Rhinopithecus_roxellana
ENSACAG00000005542	-	100	98.387	ENSSBOG00000025377	-	100	98.387	Saimiri_boliviensis_boliviensis
ENSACAG00000005542	-	100	98.394	ENSSHAG00000002552	-	100	98.394	Sarcophilus_harrisii
ENSACAG00000005542	-	99	97.166	ENSSFOG00015004800	srsf1a	99	97.166	Scleropages_formosus
ENSACAG00000005542	-	78	91.710	ENSSMAG00000007018	-	78	89.119	Scophthalmus_maximus
ENSACAG00000005542	-	94	87.083	ENSSMAG00000009719	-	80	86.275	Scophthalmus_maximus
ENSACAG00000005542	-	100	77.689	ENSSDUG00000003929	-	84	84.000	Seriola_dumerili
ENSACAG00000005542	-	78	92.228	ENSSDUG00000011303	-	83	90.155	Seriola_dumerili
ENSACAG00000005542	-	79	82.828	ENSSLDG00000016868	-	78	82.828	Seriola_lalandi_dorsalis
ENSACAG00000005542	-	78	92.228	ENSSLDG00000010543	-	78	90.155	Seriola_lalandi_dorsalis
ENSACAG00000005542	-	95	76.695	ENSSLDG00000016895	-	78	83.422	Seriola_lalandi_dorsalis
ENSACAG00000005542	-	74	97.826	ENSSARG00000010949	-	63	97.826	Sorex_araneus
ENSACAG00000005542	-	99	99.593	ENSSPUG00000000804	-	97	99.593	Sphenodon_punctatus
ENSACAG00000005542	-	78	91.710	ENSSPAG00000022562	-	78	89.637	Stegastes_partitus
ENSACAG00000005542	-	79	86.124	ENSSPAG00000014152	-	81	85.167	Stegastes_partitus
ENSACAG00000005542	-	100	98.387	ENSSSCG00000017626	-	100	98.387	Sus_scrofa
ENSACAG00000005542	-	74	100.000	ENSTGUG00000008416	-	100	100.000	Taeniopygia_guttata
ENSACAG00000005542	-	78	90.674	ENSTRUG00000003691	srsf1a	78	88.601	Takifugu_rubripes
ENSACAG00000005542	-	78	90.674	ENSTNIG00000016223	srsf1a	77	88.601	Tetraodon_nigroviridis
ENSACAG00000005542	-	74	96.721	ENSTBEG00000015378	-	63	96.721	Tupaia_belangeri
ENSACAG00000005542	-	74	98.361	ENSTTRG00000007310	SRSF1	100	98.361	Tursiops_truncatus
ENSACAG00000005542	-	100	98.387	ENSUAMG00000009858	SRSF1	100	98.387	Ursus_americanus
ENSACAG00000005542	-	99	98.374	ENSUMAG00000000455	-	97	98.374	Ursus_maritimus
ENSACAG00000005542	-	100	97.984	ENSVPAG00000010094	SRSF1	100	97.984	Vicugna_pacos
ENSACAG00000005542	-	99	98.374	ENSVVUG00000011882	-	97	98.374	Vulpes_vulpes
ENSACAG00000005542	-	100	95.968	ENSXETG00000008954	srsf1	100	91.386	Xenopus_tropicalis
ENSACAG00000005542	-	78	91.192	ENSXMAG00000011766	srsf1a	78	89.119	Xiphophorus_maculatus