EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000005983 (Gene tree)
Gene ID: 100561949
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Minus strand
Length: 7948 bases
Position: chr3:45172755-45180702
Accession: 100561949
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000005857	SMN	PF06003.12	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000005986	SMNDC1-201	717	XM_003218523	ENSACAP00000005857	238 (aa)	XP_003218571	G1KEV9

Gene Model

Click here to download ENSACAG00000005983's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000005983's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000005983	SMNDC1	100	94.958	ENSG00000119953	SMNDC1	100	94.958	Homo_sapiens
ENSACAG00000005983	SMNDC1	100	76.050	ENSAPOG00000021772	smndc1	100	76.050	Acanthochromis_polyacanthus
ENSACAG00000005983	SMNDC1	100	94.958	ENSAMEG00000005251	SMNDC1	100	94.958	Ailuropoda_melanoleuca
ENSACAG00000005983	SMNDC1	100	77.311	ENSACIG00000004819	smndc1	100	77.311	Amphilophus_citrinellus
ENSACAG00000005983	SMNDC1	100	76.050	ENSAOCG00000017869	smndc1	100	76.050	Amphiprion_ocellaris
ENSACAG00000005983	SMNDC1	100	76.050	ENSAPEG00000007752	smndc1	100	76.050	Amphiprion_percula
ENSACAG00000005983	SMNDC1	100	76.891	ENSATEG00000006830	smndc1	100	76.891	Anabas_testudineus
ENSACAG00000005983	SMNDC1	83	95.960	ENSAPLG00000004322	SMNDC1	100	95.960	Anas_platyrhynchos
ENSACAG00000005983	SMNDC1	100	94.958	ENSANAG00000032875	SMNDC1	100	94.958	Aotus_nancymaae
ENSACAG00000005983	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSACAG00000005983	SMNDC1	100	76.891	ENSAMXG00000020310	smndc1	100	76.891	Astyanax_mexicanus
ENSACAG00000005983	SMNDC1	100	94.538	ENSBTAG00000000551	SMNDC1	100	94.538	Bos_taurus
ENSACAG00000005983	SMNDC1	100	94.958	ENSCJAG00000018624	SMNDC1	100	94.958	Callithrix_jacchus
ENSACAG00000005983	SMNDC1	100	94.958	ENSCAFG00000010720	SMNDC1	100	94.958	Canis_familiaris
ENSACAG00000005983	SMNDC1	100	94.958	ENSCAFG00020011913	SMNDC1	100	94.958	Canis_lupus_dingo
ENSACAG00000005983	SMNDC1	100	94.538	ENSCHIG00000010604	SMNDC1	100	94.538	Capra_hircus
ENSACAG00000005983	SMNDC1	100	95.378	ENSTSYG00000026454	SMNDC1	100	95.378	Carlito_syrichta
ENSACAG00000005983	SMNDC1	84	94.030	ENSCAPG00000009132	SMNDC1	100	94.030	Cavia_aperea
ENSACAG00000005983	SMNDC1	100	94.958	ENSCPOG00000031666	SMNDC1	100	94.958	Cavia_porcellus
ENSACAG00000005983	SMNDC1	100	94.958	ENSCCAG00000021793	SMNDC1	100	94.958	Cebus_capucinus
ENSACAG00000005983	SMNDC1	100	94.538	ENSCATG00000035910	SMNDC1	100	94.538	Cercocebus_atys
ENSACAG00000005983	SMNDC1	100	94.958	ENSCLAG00000002838	SMNDC1	100	94.958	Chinchilla_lanigera
ENSACAG00000005983	SMNDC1	100	94.958	ENSCSAG00000005169	SMNDC1	100	94.958	Chlorocebus_sabaeus
ENSACAG00000005983	SMNDC1	81	93.264	ENSCHOG00000002936	SMNDC1	100	93.264	Choloepus_hoffmanni
ENSACAG00000005983	SMNDC1	100	95.798	ENSCPBG00000012837	SMNDC1	100	95.798	Chrysemys_picta_bellii
ENSACAG00000005983	SMNDC1	100	94.958	ENSCANG00000031720	-	100	94.958	Colobus_angolensis_palliatus
ENSACAG00000005983	SMNDC1	100	74.370	ENSCANG00000036994	-	100	74.370	Colobus_angolensis_palliatus
ENSACAG00000005983	SMNDC1	100	87.395	ENSCANG00000034620	-	100	87.395	Colobus_angolensis_palliatus
ENSACAG00000005983	SMNDC1	100	94.958	ENSCGRG00001012973	Smndc1	100	94.958	Cricetulus_griseus_chok1gshd
ENSACAG00000005983	SMNDC1	100	94.958	ENSCGRG00000012396	Smndc1	100	94.958	Cricetulus_griseus_crigri
ENSACAG00000005983	SMNDC1	100	75.210	ENSCSEG00000015621	smndc1	100	75.210	Cynoglossus_semilaevis
ENSACAG00000005983	SMNDC1	100	77.311	ENSCVAG00000020432	smndc1	100	77.311	Cyprinodon_variegatus
ENSACAG00000005983	SMNDC1	100	79.832	ENSDARG00000056235	smndc1	100	79.832	Danio_rerio
ENSACAG00000005983	SMNDC1	100	94.958	ENSDNOG00000016387	SMNDC1	83	94.958	Dasypus_novemcinctus
ENSACAG00000005983	SMNDC1	100	94.958	ENSDORG00000023715	Smndc1	100	94.958	Dipodomys_ordii
ENSACAG00000005983	SMNDC1	95	41.107	FBgn0039977	CG17454	98	42.169	Drosophila_melanogaster
ENSACAG00000005983	SMNDC1	100	71.784	ENSEBUG00000010929	smndc1	100	71.369	Eptatretus_burgeri
ENSACAG00000005983	SMNDC1	100	94.958	ENSEASG00005014930	SMNDC1	100	94.958	Equus_asinus_asinus
ENSACAG00000005983	SMNDC1	100	94.958	ENSECAG00000029973	SMNDC1	100	94.958	Equus_caballus
ENSACAG00000005983	SMNDC1	83	66.667	ENSEEUG00000013407	-	100	66.667	Erinaceus_europaeus
ENSACAG00000005983	SMNDC1	100	78.151	ENSELUG00000000227	smndc1	100	78.151	Esox_lucius
ENSACAG00000005983	SMNDC1	100	94.958	ENSFCAG00000027353	SMNDC1	100	94.958	Felis_catus
ENSACAG00000005983	SMNDC1	100	95.798	ENSFALG00000002306	SMNDC1	100	95.798	Ficedula_albicollis
ENSACAG00000005983	SMNDC1	100	94.958	ENSFDAG00000006468	SMNDC1	100	94.958	Fukomys_damarensis
ENSACAG00000005983	SMNDC1	100	77.311	ENSFHEG00000020150	smndc1	100	77.311	Fundulus_heteroclitus
ENSACAG00000005983	SMNDC1	100	76.891	ENSGMOG00000016585	smndc1	100	76.891	Gadus_morhua
ENSACAG00000005983	SMNDC1	100	95.798	ENSGALG00000008561	SMNDC1	100	95.798	Gallus_gallus
ENSACAG00000005983	SMNDC1	100	76.050	ENSGAFG00000011582	smndc1	100	76.050	Gambusia_affinis
ENSACAG00000005983	SMNDC1	100	75.210	ENSGACG00000009468	smndc1	100	75.210	Gasterosteus_aculeatus
ENSACAG00000005983	SMNDC1	100	95.798	ENSGAGG00000024547	SMNDC1	100	95.798	Gopherus_agassizii
ENSACAG00000005983	SMNDC1	100	94.958	ENSGGOG00000010071	SMNDC1	100	94.958	Gorilla_gorilla
ENSACAG00000005983	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSACAG00000005983	SMNDC1	100	94.958	ENSHGLG00000013390	-	100	94.958	Heterocephalus_glaber_female
ENSACAG00000005983	SMNDC1	100	65.164	ENSHGLG00000001157	-	100	61.224	Heterocephalus_glaber_female
ENSACAG00000005983	SMNDC1	100	72.951	ENSHGLG00100004278	-	100	72.541	Heterocephalus_glaber_male
ENSACAG00000005983	SMNDC1	100	94.958	ENSHGLG00100004814	-	100	94.958	Heterocephalus_glaber_male
ENSACAG00000005983	SMNDC1	100	74.477	ENSHCOG00000000783	smndc1	100	74.477	Hippocampus_comes
ENSACAG00000005983	SMNDC1	100	78.151	ENSIPUG00000004217	smndc1	100	78.151	Ictalurus_punctatus
ENSACAG00000005983	SMNDC1	100	95.378	ENSSTOG00000006088	SMNDC1	100	95.378	Ictidomys_tridecemlineatus
ENSACAG00000005983	SMNDC1	100	95.378	ENSJJAG00000019974	Smndc1	100	95.378	Jaculus_jaculus
ENSACAG00000005983	SMNDC1	100	76.471	ENSKMAG00000020134	smndc1	100	76.471	Kryptolebias_marmoratus
ENSACAG00000005983	SMNDC1	100	76.050	ENSLBEG00000004598	smndc1	100	76.050	Labrus_bergylta
ENSACAG00000005983	SMNDC1	100	82.773	ENSLACG00000007784	SMNDC1	100	82.773	Latimeria_chalumnae
ENSACAG00000005983	SMNDC1	100	84.454	ENSLOCG00000012355	smndc1	100	84.454	Lepisosteus_oculatus
ENSACAG00000005983	SMNDC1	100	94.538	ENSLAFG00000014353	SMNDC1	100	94.538	Loxodonta_africana
ENSACAG00000005983	SMNDC1	100	77.311	ENSMFAG00000038381	-	100	76.471	Macaca_fascicularis
ENSACAG00000005983	SMNDC1	100	94.958	ENSMFAG00000002433	-	100	94.958	Macaca_fascicularis
ENSACAG00000005983	SMNDC1	100	77.311	ENSMMUG00000045875	-	100	76.471	Macaca_mulatta
ENSACAG00000005983	SMNDC1	100	94.958	ENSMMUG00000007775	SMNDC1	100	94.958	Macaca_mulatta
ENSACAG00000005983	SMNDC1	100	94.958	ENSMNEG00000042963	-	100	94.958	Macaca_nemestrina
ENSACAG00000005983	SMNDC1	100	83.613	ENSMNEG00000033853	-	100	83.613	Macaca_nemestrina
ENSACAG00000005983	SMNDC1	100	88.703	ENSMLEG00000040236	SMNDC1	100	88.285	Mandrillus_leucophaeus
ENSACAG00000005983	SMNDC1	89	73.709	ENSMAMG00000018233	smndc1	87	73.709	Mastacembelus_armatus
ENSACAG00000005983	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSACAG00000005983	SMNDC1	84	95.500	ENSMGAG00000010777	SMNDC1	84	95.500	Meleagris_gallopavo
ENSACAG00000005983	SMNDC1	99	76.793	ENSMAUG00000005459	-	93	76.793	Mesocricetus_auratus
ENSACAG00000005983	SMNDC1	100	94.958	ENSMAUG00000012243	-	100	94.958	Mesocricetus_auratus
ENSACAG00000005983	SMNDC1	100	83.193	ENSMICG00000031640	-	100	83.193	Microcebus_murinus
ENSACAG00000005983	SMNDC1	100	94.958	ENSMICG00000027336	-	100	94.958	Microcebus_murinus
ENSACAG00000005983	SMNDC1	100	94.538	ENSMOCG00000002458	Smndc1	100	94.538	Microtus_ochrogaster
ENSACAG00000005983	SMNDC1	100	76.891	ENSMMOG00000008856	smndc1	100	76.891	Mola_mola
ENSACAG00000005983	SMNDC1	100	95.378	ENSMODG00000010542	SMNDC1	100	95.378	Monodelphis_domestica
ENSACAG00000005983	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSACAG00000005983	SMNDC1	100	94.958	MGP_CAROLIEiJ_G0023072	Smndc1	100	94.958	Mus_caroli
ENSACAG00000005983	SMNDC1	100	94.538	ENSMUSG00000025024	Smndc1	100	94.538	Mus_musculus
ENSACAG00000005983	SMNDC1	100	94.958	MGP_PahariEiJ_G0014560	Smndc1	100	94.958	Mus_pahari
ENSACAG00000005983	SMNDC1	100	94.538	MGP_SPRETEiJ_G0023993	Smndc1	100	94.538	Mus_spretus
ENSACAG00000005983	SMNDC1	100	94.958	ENSMPUG00000002089	SMNDC1	100	94.958	Mustela_putorius_furo
ENSACAG00000005983	SMNDC1	100	94.538	ENSMLUG00000016007	SMNDC1	100	94.538	Myotis_lucifugus
ENSACAG00000005983	SMNDC1	100	95.378	ENSNGAG00000006833	Smndc1	100	95.378	Nannospalax_galili
ENSACAG00000005983	SMNDC1	100	76.891	ENSNBRG00000017089	smndc1	100	76.891	Neolamprologus_brichardi
ENSACAG00000005983	SMNDC1	100	94.958	ENSNLEG00000015471	SMNDC1	100	94.958	Nomascus_leucogenys
ENSACAG00000005983	SMNDC1	82	56.500	ENSMEUG00000010120	-	100	56.716	Notamacropus_eugenii
ENSACAG00000005983	SMNDC1	100	94.958	ENSOPRG00000015348	SMNDC1	100	94.958	Ochotona_princeps
ENSACAG00000005983	SMNDC1	100	66.387	ENSODEG00000007594	-	100	63.445	Octodon_degus
ENSACAG00000005983	SMNDC1	100	76.891	ENSONIG00000000434	smndc1	100	76.891	Oreochromis_niloticus
ENSACAG00000005983	SMNDC1	100	96.639	ENSOANG00000001598	SMNDC1	100	96.639	Ornithorhynchus_anatinus
ENSACAG00000005983	SMNDC1	100	95.378	ENSOCUG00000008145	-	100	95.378	Oryctolagus_cuniculus
ENSACAG00000005983	SMNDC1	100	72.689	ENSOCUG00000012274	-	100	74.370	Oryctolagus_cuniculus
ENSACAG00000005983	SMNDC1	100	76.471	ENSORLG00000005934	smndc1	95	76.471	Oryzias_latipes
ENSACAG00000005983	SMNDC1	100	76.471	ENSORLG00020008796	smndc1	95	76.471	Oryzias_latipes_hni
ENSACAG00000005983	SMNDC1	100	76.471	ENSORLG00015013666	smndc1	100	76.471	Oryzias_latipes_hsok
ENSACAG00000005983	SMNDC1	100	78.151	ENSOMEG00000007590	smndc1	100	78.151	Oryzias_melastigma
ENSACAG00000005983	SMNDC1	100	94.538	ENSOGAG00000000571	SMNDC1	100	94.538	Otolemur_garnettii
ENSACAG00000005983	SMNDC1	100	94.538	ENSOARG00000009500	SMNDC1	100	94.538	Ovis_aries
ENSACAG00000005983	SMNDC1	100	94.958	ENSPPAG00000027815	SMNDC1	100	94.958	Pan_paniscus
ENSACAG00000005983	SMNDC1	100	94.958	ENSPPRG00000013749	SMNDC1	100	94.958	Panthera_pardus
ENSACAG00000005983	SMNDC1	100	94.958	ENSPTIG00000011451	SMNDC1	100	94.958	Panthera_tigris_altaica
ENSACAG00000005983	SMNDC1	100	94.958	ENSPTRG00000002937	SMNDC1	100	94.958	Pan_troglodytes
ENSACAG00000005983	SMNDC1	100	94.958	ENSPANG00000020805	-	100	94.958	Papio_anubis
ENSACAG00000005983	SMNDC1	100	89.076	ENSPANG00000031346	-	100	89.076	Papio_anubis
ENSACAG00000005983	SMNDC1	100	79.832	ENSPKIG00000017164	smndc1	100	79.832	Paramormyrops_kingsleyae
ENSACAG00000005983	SMNDC1	100	95.798	ENSPSIG00000012257	SMNDC1	100	95.798	Pelodiscus_sinensis
ENSACAG00000005983	SMNDC1	100	73.950	ENSPMGG00000015651	smndc1	100	73.109	Periophthalmus_magnuspinnatus
ENSACAG00000005983	SMNDC1	100	94.958	ENSPEMG00000022058	Smndc1	100	94.958	Peromyscus_maniculatus_bairdii
ENSACAG00000005983	SMNDC1	100	67.623	ENSPMAG00000007705	smndc1	100	66.805	Petromyzon_marinus
ENSACAG00000005983	SMNDC1	97	62.174	ENSPCIG00000009693	-	100	62.174	Phascolarctos_cinereus
ENSACAG00000005983	SMNDC1	100	95.378	ENSPCIG00000018419	SMNDC1	100	95.378	Phascolarctos_cinereus
ENSACAG00000005983	SMNDC1	100	76.891	ENSPFOG00000017113	smndc1	100	76.891	Poecilia_formosa
ENSACAG00000005983	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSACAG00000005983	SMNDC1	100	77.311	ENSPMEG00000012288	smndc1	100	77.311	Poecilia_mexicana
ENSACAG00000005983	SMNDC1	100	76.471	ENSPREG00000012279	smndc1	100	76.471	Poecilia_reticulata
ENSACAG00000005983	SMNDC1	100	94.958	ENSPPYG00000002643	SMNDC1	100	94.958	Pongo_abelii
ENSACAG00000005983	SMNDC1	81	93.782	ENSPCAG00000016183	SMNDC1	100	93.782	Procavia_capensis
ENSACAG00000005983	SMNDC1	100	94.538	ENSPCOG00000024343	SMNDC1	100	94.538	Propithecus_coquereli
ENSACAG00000005983	SMNDC1	100	73.109	ENSPVAG00000004368	SMNDC1	100	73.109	Pteropus_vampyrus
ENSACAG00000005983	SMNDC1	98	67.094	ENSPNYG00000024093	smndc1	98	67.094	Pundamilia_nyererei
ENSACAG00000005983	SMNDC1	100	76.471	ENSPNAG00000025285	smndc1	100	76.471	Pygocentrus_nattereri
ENSACAG00000005983	SMNDC1	100	94.958	ENSRNOG00000014833	Smndc1	100	94.958	Rattus_norvegicus
ENSACAG00000005983	SMNDC1	100	78.571	ENSRBIG00000032452	-	100	78.571	Rhinopithecus_bieti
ENSACAG00000005983	SMNDC1	100	94.538	ENSRBIG00000000224	-	100	94.538	Rhinopithecus_bieti
ENSACAG00000005983	SMNDC1	100	78.992	ENSRROG00000039125	-	100	78.992	Rhinopithecus_roxellana
ENSACAG00000005983	SMNDC1	100	94.958	ENSRROG00000044992	-	100	94.958	Rhinopithecus_roxellana
ENSACAG00000005983	SMNDC1	100	94.958	ENSSBOG00000026789	SMNDC1	100	94.958	Saimiri_boliviensis_boliviensis
ENSACAG00000005983	SMNDC1	100	95.378	ENSSHAG00000015189	SMNDC1	100	95.378	Sarcophilus_harrisii
ENSACAG00000005983	SMNDC1	100	80.672	ENSSFOG00015008311	smndc1	100	80.672	Scleropages_formosus
ENSACAG00000005983	SMNDC1	100	76.471	ENSSMAG00000020118	smndc1	100	76.471	Scophthalmus_maximus
ENSACAG00000005983	SMNDC1	100	77.731	ENSSDUG00000015330	smndc1	100	77.731	Seriola_dumerili
ENSACAG00000005983	SMNDC1	100	78.151	ENSSLDG00000017325	smndc1	100	78.151	Seriola_lalandi_dorsalis
ENSACAG00000005983	SMNDC1	100	94.958	ENSSARG00000006063	SMNDC1	100	94.958	Sorex_araneus
ENSACAG00000005983	SMNDC1	100	97.479	ENSSPUG00000004574	SMNDC1	100	97.479	Sphenodon_punctatus
ENSACAG00000005983	SMNDC1	100	75.630	ENSSPAG00000000338	smndc1	100	75.630	Stegastes_partitus
ENSACAG00000005983	SMNDC1	100	94.538	ENSSSCG00000030507	SMNDC1	100	94.538	Sus_scrofa
ENSACAG00000005983	SMNDC1	100	95.798	ENSTGUG00000010599	SMNDC1	100	95.798	Taeniopygia_guttata
ENSACAG00000005983	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSACAG00000005983	SMNDC1	100	74.790	ENSTNIG00000013331	smndc1	100	74.790	Tetraodon_nigroviridis
ENSACAG00000005983	SMNDC1	100	95.378	ENSTBEG00000014337	SMNDC1	100	95.378	Tupaia_belangeri
ENSACAG00000005983	SMNDC1	100	94.958	ENSUAMG00000008142	SMNDC1	100	94.958	Ursus_americanus
ENSACAG00000005983	SMNDC1	100	94.958	ENSUMAG00000023722	SMNDC1	100	94.958	Ursus_maritimus
ENSACAG00000005983	SMNDC1	83	95.455	ENSVPAG00000003402	SMNDC1	100	95.455	Vicugna_pacos
ENSACAG00000005983	SMNDC1	100	94.958	ENSVVUG00000007820	SMNDC1	100	94.958	Vulpes_vulpes
ENSACAG00000005983	SMNDC1	60	80.282	ENSXETG00000015415	SMNDC1	100	80.282	Xenopus_tropicalis
ENSACAG00000005983	SMNDC1	100	76.471	ENSXCOG00000009159	smndc1	100	76.471	Xiphophorus_couchianus
ENSACAG00000005983	SMNDC1	100	76.050	ENSXMAG00000012755	smndc1	100	76.050	Xiphophorus_maculatus