EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000009259 (Gene tree)
Gene ID: 100567412
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 51322 bases
Position: chrGL343349.1:620232-671553
Accession: 100567412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000009087	Upf2	PF04050.14	8.1e-34	1	1
ENSACAP00000009087	MIF4G	PF02854.19	1.1e-78	1	3
ENSACAP00000009087	MIF4G	PF02854.19	1.1e-78	2	3
ENSACAP00000009087	MIF4G	PF02854.19	1.1e-78	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000009280	UPF2-201	7064	XM_003226135	ENSACAP00000009087	1271 (aa)	XP_003226183	H9GF04

Gene Model

Click here to download ENSACAG00000009259's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03013	RNA transport	KEGG
acs03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000009259's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000009259	UPF2	100	92.217	ENSG00000151461	UPF2	100	92.217	Homo_sapiens
ENSACAG00000009259	UPF2	99	78.778	ENSAPOG00000015837	UPF2	100	78.622	Acanthochromis_polyacanthus
ENSACAG00000009259	UPF2	100	92.526	ENSAMEG00000004586	UPF2	100	92.526	Ailuropoda_melanoleuca
ENSACAG00000009259	UPF2	99	82.891	ENSACIG00000018078	UPF2	100	82.812	Amphilophus_citrinellus
ENSACAG00000009259	UPF2	100	82.839	ENSAOCG00000016766	UPF2	100	82.839	Amphiprion_ocellaris
ENSACAG00000009259	UPF2	100	82.917	ENSAPEG00000019084	UPF2	100	82.917	Amphiprion_percula
ENSACAG00000009259	UPF2	100	82.893	ENSATEG00000021677	UPF2	99	82.866	Anabas_testudineus
ENSACAG00000009259	UPF2	100	87.500	ENSAPLG00000010287	UPF2	90	92.007	Anas_platyrhynchos
ENSACAG00000009259	UPF2	99	82.585	ENSANAG00000028451	UPF2	99	82.598	Aotus_nancymaae
ENSACAG00000009259	UPF2	100	82.995	ENSACLG00000012696	UPF2	100	82.917	Astatotilapia_calliptera
ENSACAG00000009259	UPF2	99	82.864	ENSAMXG00000013700	UPF2	99	83.255	Astyanax_mexicanus
ENSACAG00000009259	UPF2	100	92.683	ENSBTAG00000000288	UPF2	100	98.901	Bos_taurus
ENSACAG00000009259	UPF2	63	30.207	WBGene00004881	smg-3	69	30.096	Caenorhabditis_elegans
ENSACAG00000009259	UPF2	100	91.267	ENSCJAG00000020685	UPF2	100	91.267	Callithrix_jacchus
ENSACAG00000009259	UPF2	100	92.683	ENSCAFG00000004839	UPF2	100	92.683	Canis_familiaris
ENSACAG00000009259	UPF2	97	97.044	ENSCAFG00020005882	UPF2	100	90.307	Canis_lupus_dingo
ENSACAG00000009259	UPF2	100	92.604	ENSCHIG00000020359	UPF2	100	92.604	Capra_hircus
ENSACAG00000009259	UPF2	100	91.739	ENSTSYG00000000935	UPF2	97	96.591	Carlito_syrichta
ENSACAG00000009259	UPF2	91	83.534	ENSCAPG00000016658	UPF2	94	83.089	Cavia_aperea
ENSACAG00000009259	UPF2	99	89.937	ENSCPOG00000008809	UPF2	100	89.620	Cavia_porcellus
ENSACAG00000009259	UPF2	100	84.579	ENSCCAG00000035991	UPF2	100	84.579	Cebus_capucinus
ENSACAG00000009259	UPF2	100	92.060	ENSCATG00000032679	UPF2	100	92.060	Cercocebus_atys
ENSACAG00000009259	UPF2	100	91.660	ENSCLAG00000011434	UPF2	100	91.345	Chinchilla_lanigera
ENSACAG00000009259	UPF2	100	92.060	ENSCSAG00000013372	UPF2	100	92.060	Chlorocebus_sabaeus
ENSACAG00000009259	UPF2	87	94.183	ENSCHOG00000000422	UPF2	89	94.183	Choloepus_hoffmanni
ENSACAG00000009259	UPF2	99	93.381	ENSCPBG00000027823	UPF2	100	93.144	Chrysemys_picta_bellii
ENSACAG00000009259	UPF2	79	49.066	ENSCSAVG00000007772	-	99	48.583	Ciona_savignyi
ENSACAG00000009259	UPF2	99	86.016	ENSCANG00000040396	UPF2	100	86.389	Colobus_angolensis_palliatus
ENSACAG00000009259	UPF2	100	91.896	ENSCGRG00001019347	Upf2	100	92.211	Cricetulus_griseus_chok1gshd
ENSACAG00000009259	UPF2	100	91.896	ENSCGRG00000017993	Upf2	100	92.211	Cricetulus_griseus_crigri
ENSACAG00000009259	UPF2	91	82.022	ENSCSEG00000003520	UPF2	91	80.997	Cynoglossus_semilaevis
ENSACAG00000009259	UPF2	99	82.639	ENSCVAG00000006167	UPF2	100	82.325	Cyprinodon_variegatus
ENSACAG00000009259	UPF2	100	92.290	ENSDNOG00000018160	UPF2	100	92.290	Dasypus_novemcinctus
ENSACAG00000009259	UPF2	100	91.345	ENSDORG00000002478	Upf2	100	91.660	Dipodomys_ordii
ENSACAG00000009259	UPF2	72	97.059	ENSETEG00000011583	-	67	97.059	Echinops_telfairi
ENSACAG00000009259	UPF2	69	68.601	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSACAG00000009259	UPF2	100	91.031	ENSEASG00005019274	UPF2	100	94.444	Equus_asinus_asinus
ENSACAG00000009259	UPF2	100	92.211	ENSECAG00000017022	UPF2	100	91.896	Equus_caballus
ENSACAG00000009259	UPF2	82	90.096	ENSEEUG00000007819	UPF2	82	90.096	Erinaceus_europaeus
ENSACAG00000009259	UPF2	99	81.861	ENSELUG00000012014	UPF2	100	82.440	Esox_lucius
ENSACAG00000009259	UPF2	100	96.133	ENSFCAG00000005785	UPF2	100	92.840	Felis_catus
ENSACAG00000009259	UPF2	100	93.863	ENSFALG00000001889	UPF2	98	93.863	Ficedula_albicollis
ENSACAG00000009259	UPF2	100	91.109	ENSFDAG00000014348	UPF2	100	91.109	Fukomys_damarensis
ENSACAG00000009259	UPF2	99	83.465	ENSFHEG00000009826	UPF2	99	83.004	Fundulus_heteroclitus
ENSACAG00000009259	UPF2	91	82.902	ENSGMOG00000005557	UPF2	100	81.328	Gadus_morhua
ENSACAG00000009259	UPF2	100	93.239	ENSGALG00000033772	UPF2	100	93.239	Gallus_gallus
ENSACAG00000009259	UPF2	100	82.059	ENSGAFG00000020867	UPF2	100	82.137	Gambusia_affinis
ENSACAG00000009259	UPF2	90	84.542	ENSGACG00000001080	UPF2	100	81.875	Gasterosteus_aculeatus
ENSACAG00000009259	UPF2	100	93.548	ENSGAGG00000002700	UPF2	100	93.548	Gopherus_agassizii
ENSACAG00000009259	UPF2	100	92.217	ENSGGOG00000001479	UPF2	100	92.217	Gorilla_gorilla
ENSACAG00000009259	UPF2	100	82.839	ENSHBUG00000004249	UPF2	100	82.891	Haplochromis_burtoni
ENSACAG00000009259	UPF2	100	91.345	ENSHGLG00000015176	-	100	91.031	Heterocephalus_glaber_female
ENSACAG00000009259	UPF2	99	81.024	ENSHGLG00000003822	-	99	80.000	Heterocephalus_glaber_female
ENSACAG00000009259	UPF2	88	93.801	ENSHGLG00100010036	UPF2	94	90.488	Heterocephalus_glaber_male
ENSACAG00000009259	UPF2	100	80.342	ENSHCOG00000004025	UPF2	99	80.264	Hippocampus_comes
ENSACAG00000009259	UPF2	100	82.371	ENSIPUG00000015524	UPF2	100	82.592	Ictalurus_punctatus
ENSACAG00000009259	UPF2	100	91.896	ENSSTOG00000013075	UPF2	100	92.211	Ictidomys_tridecemlineatus
ENSACAG00000009259	UPF2	100	90.559	ENSJJAG00000004913	Upf2	100	90.559	Jaculus_jaculus
ENSACAG00000009259	UPF2	99	82.537	ENSKMAG00000001071	UPF2	100	82.339	Kryptolebias_marmoratus
ENSACAG00000009259	UPF2	100	82.659	ENSLBEG00000016394	-	99	82.710	Labrus_bergylta
ENSACAG00000009259	UPF2	80	81.711	ENSLBEG00000000728	-	93	81.809	Labrus_bergylta
ENSACAG00000009259	UPF2	99	79.310	ENSLACG00000015945	UPF2	100	79.545	Latimeria_chalumnae
ENSACAG00000009259	UPF2	99	86.604	ENSLOCG00000015698	UPF2	100	86.525	Lepisosteus_oculatus
ENSACAG00000009259	UPF2	100	91.981	ENSMFAG00000043865	UPF2	100	91.981	Macaca_fascicularis
ENSACAG00000009259	UPF2	100	91.981	ENSMMUG00000008241	UPF2	100	91.981	Macaca_mulatta
ENSACAG00000009259	UPF2	81	90.927	ENSMNEG00000008062	UPF2	99	91.185	Macaca_nemestrina
ENSACAG00000009259	UPF2	95	95.181	ENSMLEG00000036120	UPF2	100	89.528	Mandrillus_leucophaeus
ENSACAG00000009259	UPF2	100	82.582	ENSMAMG00000018276	UPF2	100	82.632	Mastacembelus_armatus
ENSACAG00000009259	UPF2	100	82.995	ENSMZEG00005021595	UPF2	100	82.917	Maylandia_zebra
ENSACAG00000009259	UPF2	99	92.362	ENSMGAG00000004573	UPF2	99	92.362	Meleagris_gallopavo
ENSACAG00000009259	UPF2	100	89.614	ENSMAUG00000016512	Upf2	100	89.929	Mesocricetus_auratus
ENSACAG00000009259	UPF2	95	96.429	ENSMICG00000001716	UPF2	100	87.786	Microcebus_murinus
ENSACAG00000009259	UPF2	100	91.188	ENSMOCG00000008263	Upf2	100	91.267	Microtus_ochrogaster
ENSACAG00000009259	UPF2	99	79.391	ENSMMOG00000006528	UPF2	100	77.561	Mola_mola
ENSACAG00000009259	UPF2	100	93.312	ENSMODG00000016794	UPF2	100	93.312	Monodelphis_domestica
ENSACAG00000009259	UPF2	99	82.330	ENSMALG00000002663	UPF2	100	82.302	Monopterus_albus
ENSACAG00000009259	UPF2	100	91.188	MGP_CAROLIEiJ_G0023157	Upf2	100	94.476	Mus_caroli
ENSACAG00000009259	UPF2	100	91.424	ENSMUSG00000043241	Upf2	99	94.476	Mus_musculus
ENSACAG00000009259	UPF2	100	91.109	MGP_PahariEiJ_G0019217	Upf2	100	94.095	Mus_pahari
ENSACAG00000009259	UPF2	100	91.660	MGP_SPRETEiJ_G0024075	Upf2	100	94.476	Mus_spretus
ENSACAG00000009259	UPF2	100	92.526	ENSMPUG00000001064	UPF2	100	92.526	Mustela_putorius_furo
ENSACAG00000009259	UPF2	99	91.673	ENSMLUG00000000228	UPF2	100	91.595	Myotis_lucifugus
ENSACAG00000009259	UPF2	100	82.995	ENSNBRG00000013629	UPF2	100	82.917	Neolamprologus_brichardi
ENSACAG00000009259	UPF2	100	92.138	ENSNLEG00000012058	UPF2	100	92.138	Nomascus_leucogenys
ENSACAG00000009259	UPF2	56	98.964	ENSMEUG00000002180	-	59	98.964	Notamacropus_eugenii
ENSACAG00000009259	UPF2	77	97.887	ENSOPRG00000006801	-	78	97.887	Ochotona_princeps
ENSACAG00000009259	UPF2	100	91.581	ENSODEG00000001290	UPF2	100	91.267	Octodon_degus
ENSACAG00000009259	UPF2	100	83.151	ENSONIG00000017991	UPF2	100	83.073	Oreochromis_niloticus
ENSACAG00000009259	UPF2	99	90.831	ENSOCUG00000006230	UPF2	100	91.223	Oryctolagus_cuniculus
ENSACAG00000009259	UPF2	100	81.776	ENSORLG00000017189	UPF2	100	82.293	Oryzias_latipes
ENSACAG00000009259	UPF2	100	81.776	ENSORLG00020005969	UPF2	100	82.293	Oryzias_latipes_hni
ENSACAG00000009259	UPF2	100	81.776	ENSORLG00015005713	UPF2	100	82.293	Oryzias_latipes_hsok
ENSACAG00000009259	UPF2	100	78.972	ENSOMEG00000023420	UPF2	98	79.203	Oryzias_melastigma
ENSACAG00000009259	UPF2	100	91.896	ENSOGAG00000005796	UPF2	100	91.896	Otolemur_garnettii
ENSACAG00000009259	UPF2	100	92.459	ENSOARG00000014587	UPF2	100	92.459	Ovis_aries
ENSACAG00000009259	UPF2	99	88.585	ENSPPAG00000037953	UPF2	100	89.055	Pan_paniscus
ENSACAG00000009259	UPF2	100	92.840	ENSPPRG00000000690	UPF2	100	92.840	Panthera_pardus
ENSACAG00000009259	UPF2	100	92.840	ENSPTIG00000008867	UPF2	100	92.840	Panthera_tigris_altaica
ENSACAG00000009259	UPF2	100	92.217	ENSPTRG00000002291	UPF2	100	92.217	Pan_troglodytes
ENSACAG00000009259	UPF2	100	92.060	ENSPANG00000023399	UPF2	100	92.060	Papio_anubis
ENSACAG00000009259	UPF2	100	80.577	ENSPKIG00000025502	UPF2	100	81.435	Paramormyrops_kingsleyae
ENSACAG00000009259	UPF2	59	92.563	ENSPSIG00000015158	UPF2	95	92.563	Pelodiscus_sinensis
ENSACAG00000009259	UPF2	99	81.255	ENSPMGG00000005259	UPF2	100	81.383	Periophthalmus_magnuspinnatus
ENSACAG00000009259	UPF2	93	86.589	ENSPEMG00000015731	Upf2	99	86.589	Peromyscus_maniculatus_bairdii
ENSACAG00000009259	UPF2	100	93.234	ENSPCIG00000006656	UPF2	100	93.234	Phascolarctos_cinereus
ENSACAG00000009259	UPF2	100	82.605	ENSPFOG00000017118	UPF2	100	82.293	Poecilia_formosa
ENSACAG00000009259	UPF2	100	82.605	ENSPLAG00000005094	UPF2	100	82.293	Poecilia_latipinna
ENSACAG00000009259	UPF2	100	82.605	ENSPMEG00000017009	UPF2	100	82.293	Poecilia_mexicana
ENSACAG00000009259	UPF2	99	82.459	ENSPREG00000021880	UPF2	100	82.381	Poecilia_reticulata
ENSACAG00000009259	UPF2	66	94.258	ENSPPYG00000002089	-	100	94.258	Pongo_abelii
ENSACAG00000009259	UPF2	100	78.993	ENSPCAG00000000684	UPF2	100	78.993	Procavia_capensis
ENSACAG00000009259	UPF2	99	88.968	ENSPCOG00000021656	UPF2	100	89.283	Propithecus_coquereli
ENSACAG00000009259	UPF2	100	84.748	ENSPVAG00000017286	UPF2	100	84.748	Pteropus_vampyrus
ENSACAG00000009259	UPF2	99	80.547	ENSPNYG00000017096	UPF2	100	80.469	Pundamilia_nyererei
ENSACAG00000009259	UPF2	100	83.541	ENSPNAG00000009357	UPF2	100	84.087	Pygocentrus_nattereri
ENSACAG00000009259	UPF2	99	86.656	ENSRNOG00000023593	Upf2	100	98.889	Rattus_norvegicus
ENSACAG00000009259	UPF2	99	90.701	ENSRBIG00000037780	UPF2	100	91.017	Rhinopithecus_bieti
ENSACAG00000009259	UPF2	100	91.588	ENSRROG00000043547	UPF2	100	91.903	Rhinopithecus_roxellana
ENSACAG00000009259	UPF2	100	90.637	ENSSBOG00000020012	UPF2	100	90.952	Saimiri_boliviensis_boliviensis
ENSACAG00000009259	UPF2	100	81.684	ENSSFOG00015023788	upf2	100	83.087	Scleropages_formosus
ENSACAG00000009259	UPF2	90	82.771	ENSSMAG00000007637	UPF2	100	80.605	Scophthalmus_maximus
ENSACAG00000009259	UPF2	100	82.761	ENSSDUG00000017244	UPF2	99	83.073	Seriola_dumerili
ENSACAG00000009259	UPF2	99	81.441	ENSSLDG00000016866	UPF2	100	81.284	Seriola_lalandi_dorsalis
ENSACAG00000009259	UPF2	100	90.637	ENSSARG00000008615	UPF2	100	90.637	Sorex_araneus
ENSACAG00000009259	UPF2	99	91.732	ENSSPUG00000014544	UPF2	99	91.732	Sphenodon_punctatus
ENSACAG00000009259	UPF2	68	93.671	ENSSSCG00000011117	-	100	93.671	Sus_scrofa
ENSACAG00000009259	UPF2	99	94.006	ENSTGUG00000002163	-	100	94.006	Taeniopygia_guttata
ENSACAG00000009259	UPF2	100	82.321	ENSTRUG00000007519	UPF2	99	82.449	Takifugu_rubripes
ENSACAG00000009259	UPF2	93	84.759	ENSTBEG00000012679	UPF2	93	85.097	Tupaia_belangeri
ENSACAG00000009259	UPF2	100	92.054	ENSTTRG00000016388	UPF2	100	91.817	Tursiops_truncatus
ENSACAG00000009259	UPF2	92	97.222	ENSUAMG00000023560	UPF2	99	98.876	Ursus_americanus
ENSACAG00000009259	UPF2	100	92.604	ENSUMAG00000012953	UPF2	95	92.604	Ursus_maritimus
ENSACAG00000009259	UPF2	85	96.774	ENSVPAG00000006763	UPF2	86	96.774	Vicugna_pacos
ENSACAG00000009259	UPF2	100	92.683	ENSVVUG00000006166	UPF2	100	92.683	Vulpes_vulpes
ENSACAG00000009259	UPF2	100	83.934	ENSXETG00000033103	UPF2	91	88.764	Xenopus_tropicalis
ENSACAG00000009259	UPF2	99	82.031	ENSXCOG00000011604	UPF2	100	81.875	Xiphophorus_couchianus
ENSACAG00000009259	UPF2	100	82.215	ENSXMAG00000017209	UPF2	100	81.903	Xiphophorus_maculatus