EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000009530 (Gene tree)
Gene ID: 100555115
Gene Symbol: LSM5
Alias: YER146W
Full Name: U6 snRNA-associated Sm-like protein LSm5
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 2831 bases
Position: chrAAWZ02041982:111-2941
Accession: 100555115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000009319	LSM	PF01423.22	4.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000009513	LSM5-201	180	XM_003230802	ENSACAP00000009319	60 (aa)	XP_003230850	H9GFA5

Gene Model

Click here to download ENSACAG00000009530's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03018	RNA degradation	KEGG
acs03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000009530's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000009530	LSM5	93	100.000	ENSG00000106355	LSM5	81	92.308	Homo_sapiens
ENSACAG00000009530	LSM5	93	94.643	ENSAPOG00000011743	LSM5	63	94.643	Acanthochromis_polyacanthus
ENSACAG00000009530	LSM5	93	94.643	ENSAPOG00000020779	LSM5	66	94.643	Acanthochromis_polyacanthus
ENSACAG00000009530	LSM5	93	100.000	ENSAMEG00000006700	LSM5	62	100.000	Ailuropoda_melanoleuca
ENSACAG00000009530	LSM5	93	94.643	ENSAOCG00000001636	lsm5	62	94.643	Amphiprion_ocellaris
ENSACAG00000009530	LSM5	93	94.643	ENSAPEG00000008151	lsm5	62	94.643	Amphiprion_percula
ENSACAG00000009530	LSM5	68	100.000	ENSAPLG00000008171	LSM5	55	100.000	Anas_platyrhynchos
ENSACAG00000009530	LSM5	100	91.667	ENSANAG00000024192	-	88	83.051	Aotus_nancymaae
ENSACAG00000009530	LSM5	93	98.214	ENSANAG00000034409	-	81	90.385	Aotus_nancymaae
ENSACAG00000009530	LSM5	93	71.429	ENSANAG00000037758	-	56	71.429	Aotus_nancymaae
ENSACAG00000009530	LSM5	87	94.231	ENSACLG00000012891	lsm5	59	94.231	Astatotilapia_calliptera
ENSACAG00000009530	LSM5	93	72.881	ENSAMXG00000035543	lsm5	63	72.881	Astyanax_mexicanus
ENSACAG00000009530	LSM5	78	82.979	ENSBTAG00000052014	-	62	82.979	Bos_taurus
ENSACAG00000009530	LSM5	93	100.000	ENSBTAG00000002332	LSM5	62	100.000	Bos_taurus
ENSACAG00000009530	LSM5	93	73.214	WBGene00003079	lsm-5	62	73.214	Caenorhabditis_elegans
ENSACAG00000009530	LSM5	92	83.636	ENSCJAG00000005678	-	62	83.636	Callithrix_jacchus
ENSACAG00000009530	LSM5	100	96.667	ENSCJAG00000047379	LSM5	81	92.308	Callithrix_jacchus
ENSACAG00000009530	LSM5	83	94.000	ENSCAFG00000030781	-	58	94.000	Canis_familiaris
ENSACAG00000009530	LSM5	93	100.000	ENSCAFG00000019261	-	62	100.000	Canis_familiaris
ENSACAG00000009530	LSM5	93	100.000	ENSCAFG00020004946	LSM5	62	100.000	Canis_lupus_dingo
ENSACAG00000009530	LSM5	93	100.000	ENSCHIG00000024539	LSM5	62	100.000	Capra_hircus
ENSACAG00000009530	LSM5	93	71.429	ENSCHIG00000021428	-	64	71.429	Capra_hircus
ENSACAG00000009530	LSM5	93	98.214	ENSCHIG00000004079	-	62	98.214	Capra_hircus
ENSACAG00000009530	LSM5	90	92.593	ENSTSYG00000036637	-	74	92.593	Carlito_syrichta
ENSACAG00000009530	LSM5	93	100.000	ENSTSYG00000006449	-	80	94.118	Carlito_syrichta
ENSACAG00000009530	LSM5	93	73.214	ENSTSYG00000026530	-	53	73.214	Carlito_syrichta
ENSACAG00000009530	LSM5	93	83.929	ENSTSYG00000028728	-	59	83.929	Carlito_syrichta
ENSACAG00000009530	LSM5	67	100.000	ENSCAPG00000006980	LSM5	53	100.000	Cavia_aperea
ENSACAG00000009530	LSM5	93	100.000	ENSCPOG00000036386	LSM5	80	100.000	Cavia_porcellus
ENSACAG00000009530	LSM5	93	57.143	ENSCCAG00000037334	-	55	57.143	Cebus_capucinus
ENSACAG00000009530	LSM5	93	98.214	ENSCCAG00000000821	-	62	98.214	Cebus_capucinus
ENSACAG00000009530	LSM5	93	100.000	ENSCCAG00000037808	-	81	92.308	Cebus_capucinus
ENSACAG00000009530	LSM5	93	96.429	ENSCCAG00000032123	-	62	96.429	Cebus_capucinus
ENSACAG00000009530	LSM5	93	71.429	ENSCCAG00000032792	-	56	71.429	Cebus_capucinus
ENSACAG00000009530	LSM5	92	98.182	ENSCATG00000014790	-	95	98.182	Cercocebus_atys
ENSACAG00000009530	LSM5	93	100.000	ENSCATG00000040218	LSM5	81	92.308	Cercocebus_atys
ENSACAG00000009530	LSM5	93	100.000	ENSCLAG00000000202	LSM5	80	100.000	Chinchilla_lanigera
ENSACAG00000009530	LSM5	93	83.929	ENSCLAG00000005062	-	55	83.929	Chinchilla_lanigera
ENSACAG00000009530	LSM5	93	100.000	ENSCHOG00000005335	LSM5	74	100.000	Choloepus_hoffmanni
ENSACAG00000009530	LSM5	93	100.000	ENSCPBG00000013685	LSM5	62	100.000	Chrysemys_picta_bellii
ENSACAG00000009530	LSM5	90	90.741	ENSCING00000020625	-	60	90.741	Ciona_intestinalis
ENSACAG00000009530	LSM5	82	93.878	ENSCSAVG00000001439	-	56	93.878	Ciona_savignyi
ENSACAG00000009530	LSM5	93	100.000	ENSCANG00000039909	LSM5	81	92.308	Colobus_angolensis_palliatus
ENSACAG00000009530	LSM5	93	100.000	ENSCGRG00001015461	Lsm5	80	100.000	Cricetulus_griseus_chok1gshd
ENSACAG00000009530	LSM5	67	100.000	ENSCGRG00000007677	Lsm5	53	100.000	Cricetulus_griseus_crigri
ENSACAG00000009530	LSM5	93	92.857	ENSCVAG00000004262	lsm5	62	92.857	Cyprinodon_variegatus
ENSACAG00000009530	LSM5	93	92.857	ENSDARG00000071573	lsm5	62	92.857	Danio_rerio
ENSACAG00000009530	LSM5	93	100.000	ENSDNOG00000034958	LSM5	63	100.000	Dasypus_novemcinctus
ENSACAG00000009530	LSM5	93	89.286	ENSDNOG00000049495	-	62	89.286	Dasypus_novemcinctus
ENSACAG00000009530	LSM5	93	100.000	ENSDORG00000009422	Lsm5	62	100.000	Dipodomys_ordii
ENSACAG00000009530	LSM5	92	76.364	FBgn0035675	CG6610	60	76.364	Drosophila_melanogaster
ENSACAG00000009530	LSM5	93	64.286	ENSETEG00000000777	-	63	64.286	Echinops_telfairi
ENSACAG00000009530	LSM5	77	82.609	ENSETEG00000001469	-	58	82.609	Echinops_telfairi
ENSACAG00000009530	LSM5	82	81.633	ENSETEG00000010651	-	59	81.633	Echinops_telfairi
ENSACAG00000009530	LSM5	58	82.857	ENSETEG00000016074	-	55	82.857	Echinops_telfairi
ENSACAG00000009530	LSM5	93	100.000	ENSETEG00000018068	LSM5	62	100.000	Echinops_telfairi
ENSACAG00000009530	LSM5	93	92.857	ENSEBUG00000008540	lsm5	62	92.857	Eptatretus_burgeri
ENSACAG00000009530	LSM5	93	100.000	ENSEASG00005003500	LSM5	62	100.000	Equus_asinus_asinus
ENSACAG00000009530	LSM5	88	90.566	ENSECAG00000018445	LSM5	65	90.566	Equus_caballus
ENSACAG00000009530	LSM5	93	92.857	ENSELUG00000007792	lsm5	62	92.857	Esox_lucius
ENSACAG00000009530	LSM5	93	100.000	ENSFCAG00000000230	LSM5	81	92.308	Felis_catus
ENSACAG00000009530	LSM5	93	100.000	ENSFDAG00000008767	LSM5	80	100.000	Fukomys_damarensis
ENSACAG00000009530	LSM5	87	65.385	ENSFDAG00000008685	-	62	65.385	Fukomys_damarensis
ENSACAG00000009530	LSM5	85	70.588	ENSFHEG00000004011	lsm5	56	70.588	Fundulus_heteroclitus
ENSACAG00000009530	LSM5	93	92.857	ENSGMOG00000018235	lsm5	62	92.857	Gadus_morhua
ENSACAG00000009530	LSM5	93	98.214	ENSGALG00000041625	LSM5	62	98.214	Gallus_gallus
ENSACAG00000009530	LSM5	93	94.643	ENSGACG00000005528	lsm5	62	94.643	Gasterosteus_aculeatus
ENSACAG00000009530	LSM5	93	100.000	ENSGAGG00000015593	LSM5	62	100.000	Gopherus_agassizii
ENSACAG00000009530	LSM5	93	100.000	ENSGGOG00000043469	LSM5	81	92.308	Gorilla_gorilla
ENSACAG00000009530	LSM5	87	94.231	ENSHBUG00000013773	lsm5	59	94.231	Haplochromis_burtoni
ENSACAG00000009530	LSM5	93	100.000	ENSHGLG00000011765	LSM5	80	100.000	Heterocephalus_glaber_female
ENSACAG00000009530	LSM5	93	94.643	ENSHGLG00100015610	LSM5	79	93.617	Heterocephalus_glaber_male
ENSACAG00000009530	LSM5	93	91.071	ENSIPUG00000021095	LSM5	62	91.071	Ictalurus_punctatus
ENSACAG00000009530	LSM5	82	80.392	ENSSTOG00000033886	-	57	80.392	Ictidomys_tridecemlineatus
ENSACAG00000009530	LSM5	93	100.000	ENSSTOG00000012662	LSM5	80	100.000	Ictidomys_tridecemlineatus
ENSACAG00000009530	LSM5	93	96.429	ENSJJAG00000012145	-	62	96.429	Jaculus_jaculus
ENSACAG00000009530	LSM5	93	67.857	ENSJJAG00000016144	-	52	67.857	Jaculus_jaculus
ENSACAG00000009530	LSM5	93	91.071	ENSJJAG00000004475	-	71	91.071	Jaculus_jaculus
ENSACAG00000009530	LSM5	93	94.643	ENSKMAG00000021861	lsm5	62	94.643	Kryptolebias_marmoratus
ENSACAG00000009530	LSM5	93	80.357	ENSLBEG00000017379	lsm5	92	80.357	Labrus_bergylta
ENSACAG00000009530	LSM5	93	96.429	ENSLACG00000022448	LSM5	62	96.429	Latimeria_chalumnae
ENSACAG00000009530	LSM5	93	92.857	ENSLOCG00000012903	lsm5	62	92.857	Lepisosteus_oculatus
ENSACAG00000009530	LSM5	93	60.714	ENSLAFG00000027938	-	56	60.714	Loxodonta_africana
ENSACAG00000009530	LSM5	93	100.000	ENSLAFG00000029579	LSM5	62	100.000	Loxodonta_africana
ENSACAG00000009530	LSM5	93	94.643	ENSMFAG00000030152	-	62	94.643	Macaca_fascicularis
ENSACAG00000009530	LSM5	80	97.917	ENSMFAG00000031187	-	81	97.917	Macaca_fascicularis
ENSACAG00000009530	LSM5	93	100.000	ENSMFAG00000038508	LSM5	81	92.308	Macaca_fascicularis
ENSACAG00000009530	LSM5	93	94.643	ENSMMUG00000030131	-	62	94.643	Macaca_mulatta
ENSACAG00000009530	LSM5	87	92.308	ENSMMUG00000045129	-	81	92.308	Macaca_mulatta
ENSACAG00000009530	LSM5	92	98.182	ENSMMUG00000039822	-	67	98.182	Macaca_mulatta
ENSACAG00000009530	LSM5	93	94.643	ENSMNEG00000037935	-	62	94.643	Macaca_nemestrina
ENSACAG00000009530	LSM5	93	100.000	ENSMNEG00000015331	LSM5	79	92.308	Macaca_nemestrina
ENSACAG00000009530	LSM5	93	100.000	ENSMLEG00000024945	LSM5	81	92.308	Mandrillus_leucophaeus
ENSACAG00000009530	LSM5	90	98.148	ENSMLEG00000034037	-	83	88.000	Mandrillus_leucophaeus
ENSACAG00000009530	LSM5	93	91.071	ENSMAMG00000012869	lsm5	62	91.071	Mastacembelus_armatus
ENSACAG00000009530	LSM5	87	94.231	ENSMZEG00005019554	lsm5	59	94.231	Maylandia_zebra
ENSACAG00000009530	LSM5	93	98.214	ENSMGAG00000012117	LSM5	62	98.214	Meleagris_gallopavo
ENSACAG00000009530	LSM5	93	98.214	ENSMAUG00000008132	-	62	98.214	Mesocricetus_auratus
ENSACAG00000009530	LSM5	93	100.000	ENSMAUG00000012222	Lsm5	80	100.000	Mesocricetus_auratus
ENSACAG00000009530	LSM5	92	63.636	ENSMICG00000033928	-	51	63.636	Microcebus_murinus
ENSACAG00000009530	LSM5	93	100.000	ENSMICG00000005353	LSM5	81	92.308	Microcebus_murinus
ENSACAG00000009530	LSM5	93	100.000	ENSMOCG00000012018	Lsm5	80	100.000	Microtus_ochrogaster
ENSACAG00000009530	LSM5	93	100.000	MGP_CAROLIEiJ_G0028421	Lsm5	100	100.000	Mus_caroli
ENSACAG00000009530	LSM5	93	100.000	ENSMUSG00000091625	Lsm5	100	100.000	Mus_musculus
ENSACAG00000009530	LSM5	93	100.000	MGP_PahariEiJ_G0022171	Lsm5	100	100.000	Mus_pahari
ENSACAG00000009530	LSM5	93	100.000	MGP_SPRETEiJ_G0029423	Lsm5	100	100.000	Mus_spretus
ENSACAG00000009530	LSM5	93	100.000	ENSMLUG00000017028	LSM5	62	100.000	Myotis_lucifugus
ENSACAG00000009530	LSM5	93	100.000	ENSNGAG00000024142	Lsm5	80	100.000	Nannospalax_galili
ENSACAG00000009530	LSM5	92	69.091	ENSNGAG00000022569	-	54	69.091	Nannospalax_galili
ENSACAG00000009530	LSM5	93	79.310	ENSNGAG00000017707	-	60	79.310	Nannospalax_galili
ENSACAG00000009530	LSM5	75	88.889	ENSNBRG00000009964	LSM5	96	88.889	Neolamprologus_brichardi
ENSACAG00000009530	LSM5	93	100.000	ENSNLEG00000015268	LSM5	81	92.308	Nomascus_leucogenys
ENSACAG00000009530	LSM5	67	100.000	ENSOPRG00000002443	LSM5	53	100.000	Ochotona_princeps
ENSACAG00000009530	LSM5	93	100.000	ENSODEG00000008258	-	62	100.000	Octodon_degus
ENSACAG00000009530	LSM5	93	100.000	ENSODEG00000019072	-	62	100.000	Octodon_degus
ENSACAG00000009530	LSM5	73	68.182	ENSOANG00000014540	-	59	68.182	Ornithorhynchus_anatinus
ENSACAG00000009530	LSM5	93	100.000	ENSOCUG00000029043	LSM5	62	100.000	Oryctolagus_cuniculus
ENSACAG00000009530	LSM5	93	92.857	ENSORLG00020003019	lsm5	55	92.857	Oryzias_latipes_hni
ENSACAG00000009530	LSM5	93	92.857	ENSORLG00015003338	lsm5	62	92.857	Oryzias_latipes_hsok
ENSACAG00000009530	LSM5	93	91.071	ENSOMEG00000001078	lsm5	62	91.071	Oryzias_melastigma
ENSACAG00000009530	LSM5	93	100.000	ENSOGAG00000013892	LSM5	62	100.000	Otolemur_garnettii
ENSACAG00000009530	LSM5	93	100.000	ENSOARG00000006944	LSM5	62	100.000	Ovis_aries
ENSACAG00000009530	LSM5	93	100.000	ENSPPAG00000003697	-	81	92.308	Pan_paniscus
ENSACAG00000009530	LSM5	93	100.000	ENSPPRG00000002550	LSM5	81	92.308	Panthera_pardus
ENSACAG00000009530	LSM5	93	100.000	ENSPTIG00000015604	LSM5	81	92.308	Panthera_tigris_altaica
ENSACAG00000009530	LSM5	93	100.000	ENSPTRG00000019057	LSM5	62	100.000	Pan_troglodytes
ENSACAG00000009530	LSM5	87	92.308	ENSPTRG00000049488	-	60	92.308	Pan_troglodytes
ENSACAG00000009530	LSM5	93	92.857	ENSPANG00000033477	-	62	92.857	Papio_anubis
ENSACAG00000009530	LSM5	93	100.000	ENSPANG00000032179	-	81	92.308	Papio_anubis
ENSACAG00000009530	LSM5	92	98.182	ENSPANG00000032538	-	67	98.182	Papio_anubis
ENSACAG00000009530	LSM5	93	92.857	ENSPKIG00000011910	lsm5	62	92.857	Paramormyrops_kingsleyae
ENSACAG00000009530	LSM5	68	100.000	ENSPSIG00000014796	LSM5	55	100.000	Pelodiscus_sinensis
ENSACAG00000009530	LSM5	83	74.000	ENSPEMG00000022375	-	61	74.000	Peromyscus_maniculatus_bairdii
ENSACAG00000009530	LSM5	78	100.000	ENSPEMG00000019994	-	80	100.000	Peromyscus_maniculatus_bairdii
ENSACAG00000009530	LSM5	93	92.857	ENSPFOG00000001433	lsm5	62	92.857	Poecilia_formosa
ENSACAG00000009530	LSM5	93	92.857	ENSPLAG00000009665	lsm5	62	92.857	Poecilia_latipinna
ENSACAG00000009530	LSM5	93	92.857	ENSPMEG00000022265	lsm5	62	92.857	Poecilia_mexicana
ENSACAG00000009530	LSM5	93	94.643	ENSPPYG00000017661	LSM5	62	94.643	Pongo_abelii
ENSACAG00000009530	LSM5	93	100.000	ENSPCAG00000013740	LSM5	69	100.000	Procavia_capensis
ENSACAG00000009530	LSM5	93	100.000	ENSPVAG00000009786	LSM5	62	100.000	Pteropus_vampyrus
ENSACAG00000009530	LSM5	87	94.231	ENSPNYG00000022236	lsm5	59	94.231	Pundamilia_nyererei
ENSACAG00000009530	LSM5	93	91.071	ENSPNAG00000001887	lsm5	62	91.071	Pygocentrus_nattereri
ENSACAG00000009530	LSM5	93	100.000	ENSRNOG00000042126	Lsm5	62	100.000	Rattus_norvegicus
ENSACAG00000009530	LSM5	93	92.982	ENSRNOG00000027305	AABR07065089.1	62	92.982	Rattus_norvegicus
ENSACAG00000009530	LSM5	93	100.000	ENSRBIG00000030340	-	62	100.000	Rhinopithecus_bieti
ENSACAG00000009530	LSM5	93	100.000	ENSRBIG00000027803	-	83	90.741	Rhinopithecus_bieti
ENSACAG00000009530	LSM5	93	100.000	ENSRBIG00000030714	-	62	100.000	Rhinopithecus_bieti
ENSACAG00000009530	LSM5	93	100.000	ENSRBIG00000024431	-	62	100.000	Rhinopithecus_bieti
ENSACAG00000009530	LSM5	93	100.000	ENSRROG00000023884	-	62	100.000	Rhinopithecus_roxellana
ENSACAG00000009530	LSM5	93	100.000	ENSRROG00000004655	-	62	100.000	Rhinopithecus_roxellana
ENSACAG00000009530	LSM5	93	100.000	ENSRROG00000042782	-	83	90.741	Rhinopithecus_roxellana
ENSACAG00000009530	LSM5	93	69.643	ENSSBOG00000034794	-	56	69.643	Saimiri_boliviensis_boliviensis
ENSACAG00000009530	LSM5	93	100.000	ENSSBOG00000012312	LSM5	81	92.308	Saimiri_boliviensis_boliviensis
ENSACAG00000009530	LSM5	93	98.214	ENSSBOG00000019124	-	62	98.214	Saimiri_boliviensis_boliviensis
ENSACAG00000009530	LSM5	93	92.857	ENSSFOG00015010099	lsm5	62	92.857	Scleropages_formosus
ENSACAG00000009530	LSM5	93	92.857	ENSSLDG00000025242	lsm5	62	92.857	Seriola_lalandi_dorsalis
ENSACAG00000009530	LSM5	78	78.723	ENSSLDG00000008014	-	56	78.723	Seriola_lalandi_dorsalis
ENSACAG00000009530	LSM5	93	98.214	ENSSARG00000003330	LSM5	62	98.214	Sorex_araneus
ENSACAG00000009530	LSM5	93	96.429	ENSSPUG00000002690	LSM5	62	96.429	Sphenodon_punctatus
ENSACAG00000009530	LSM5	93	100.000	ENSSSCG00000026064	-	62	100.000	Sus_scrofa
ENSACAG00000009530	LSM5	93	89.286	ENSSSCG00000029661	-	78	89.286	Sus_scrofa
ENSACAG00000009530	LSM5	93	94.643	ENSTGUG00000017539	LSM5	62	94.643	Taeniopygia_guttata
ENSACAG00000009530	LSM5	87	96.154	ENSTNIG00000008695	lsm5	59	96.154	Tetraodon_nigroviridis
ENSACAG00000009530	LSM5	93	100.000	ENSTBEG00000004876	LSM5	62	100.000	Tupaia_belangeri
ENSACAG00000009530	LSM5	93	100.000	ENSTTRG00000004237	LSM5	62	100.000	Tursiops_truncatus
ENSACAG00000009530	LSM5	87	92.308	ENSUAMG00000009786	LSM5	68	92.308	Ursus_americanus
ENSACAG00000009530	LSM5	93	100.000	ENSVPAG00000009985	LSM5	62	100.000	Vicugna_pacos
ENSACAG00000009530	LSM5	93	100.000	ENSVVUG00000021311	LSM5	62	100.000	Vulpes_vulpes
ENSACAG00000009530	LSM5	93	94.643	ENSXETG00000026465	lsm5	68	94.643	Xenopus_tropicalis
ENSACAG00000009530	LSM5	93	92.857	ENSXMAG00000029988	lsm5	62	92.857	Xiphophorus_maculatus