EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000009655 (Gene tree)
Gene ID: 100551901
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 82950 bases
Position: chrGL343636.1:12442-95391
Accession: 100551901
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000009545	CPSF_A	PF03178.15	3.1e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000009742	CPSF1-201	4159	XM_008122026	ENSACAP00000009545	1334 (aa)	-	H9GFJ4

Gene Model

Click here to download ENSACAG00000009655's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000009655's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000009655	CPSF1	100	81.561	ENSG00000071894	CPSF1	99	83.511	Homo_sapiens
ENSACAG00000009655	CPSF1	100	73.657	ENSAPOG00000019621	cpsf1	93	73.948	Acanthochromis_polyacanthus
ENSACAG00000009655	CPSF1	97	81.706	ENSAMEG00000005557	CPSF1	94	81.706	Ailuropoda_melanoleuca
ENSACAG00000009655	CPSF1	100	74.664	ENSACIG00000006112	cpsf1	93	74.870	Amphilophus_citrinellus
ENSACAG00000009655	CPSF1	100	74.465	ENSAOCG00000007120	cpsf1	93	74.317	Amphiprion_ocellaris
ENSACAG00000009655	CPSF1	100	75.074	ENSAPEG00000005755	cpsf1	93	75.074	Amphiprion_percula
ENSACAG00000009655	CPSF1	100	73.986	ENSATEG00000011097	cpsf1	93	74.366	Anabas_testudineus
ENSACAG00000009655	CPSF1	100	81.696	ENSANAG00000036514	CPSF1	93	81.696	Aotus_nancymaae
ENSACAG00000009655	CPSF1	100	73.983	ENSACLG00000012231	cpsf1	92	74.242	Astatotilapia_calliptera
ENSACAG00000009655	CPSF1	100	68.940	ENSAMXG00000008485	cpsf1	92	69.014	Astyanax_mexicanus
ENSACAG00000009655	CPSF1	100	81.798	ENSBTAG00000008355	CPSF1	91	81.798	Bos_taurus
ENSACAG00000009655	CPSF1	98	31.263	WBGene00022301	cpsf-1	91	31.121	Caenorhabditis_elegans
ENSACAG00000009655	CPSF1	100	81.622	ENSCJAG00000021421	CPSF1	93	81.622	Callithrix_jacchus
ENSACAG00000009655	CPSF1	97	81.846	ENSCAFG00000001600	CPSF1	92	81.846	Canis_familiaris
ENSACAG00000009655	CPSF1	100	82.244	ENSCAFG00020020821	CPSF1	93	82.244	Canis_lupus_dingo
ENSACAG00000009655	CPSF1	96	80.623	ENSCHIG00000015833	CPSF1	91	80.623	Capra_hircus
ENSACAG00000009655	CPSF1	100	81.771	ENSTSYG00000028560	CPSF1	93	81.771	Carlito_syrichta
ENSACAG00000009655	CPSF1	96	79.861	ENSCAPG00000014921	CPSF1	92	79.861	Cavia_aperea
ENSACAG00000009655	CPSF1	100	79.762	ENSCPOG00000011448	CPSF1	93	79.762	Cavia_porcellus
ENSACAG00000009655	CPSF1	100	81.696	ENSCCAG00000037658	CPSF1	93	81.696	Cebus_capucinus
ENSACAG00000009655	CPSF1	100	81.473	ENSCATG00000037234	CPSF1	89	88.955	Cercocebus_atys
ENSACAG00000009655	CPSF1	100	81.683	ENSCLAG00000012166	CPSF1	93	81.683	Chinchilla_lanigera
ENSACAG00000009655	CPSF1	100	81.622	ENSCSAG00000008502	CPSF1	93	81.622	Chlorocebus_sabaeus
ENSACAG00000009655	CPSF1	100	87.193	ENSCPBG00000018910	CPSF1	90	87.193	Chrysemys_picta_bellii
ENSACAG00000009655	CPSF1	99	45.575	ENSCING00000000514	-	97	45.575	Ciona_intestinalis
ENSACAG00000009655	CPSF1	99	45.428	ENSCSAVG00000002293	-	93	45.254	Ciona_savignyi
ENSACAG00000009655	CPSF1	99	77.085	ENSCANG00000032760	CPSF1	92	77.085	Colobus_angolensis_palliatus
ENSACAG00000009655	CPSF1	100	81.385	ENSCGRG00001016344	Cpsf1	93	81.385	Cricetulus_griseus_chok1gshd
ENSACAG00000009655	CPSF1	100	79.151	ENSCGRG00000003118	Cpsf1	93	79.151	Cricetulus_griseus_crigri
ENSACAG00000009655	CPSF1	100	73.532	ENSCSEG00000013464	cpsf1	93	73.755	Cynoglossus_semilaevis
ENSACAG00000009655	CPSF1	84	72.277	ENSCVAG00000014059	cpsf1	81	72.277	Cyprinodon_variegatus
ENSACAG00000009655	CPSF1	100	75.962	ENSDARG00000034178	cpsf1	93	76.036	Danio_rerio
ENSACAG00000009655	CPSF1	61	82.639	ENSDNOG00000043654	CPSF1	94	70.690	Dasypus_novemcinctus
ENSACAG00000009655	CPSF1	96	81.361	ENSDORG00000006278	Cpsf1	92	81.361	Dipodomys_ordii
ENSACAG00000009655	CPSF1	100	42.632	FBgn0024698	Cpsf160	93	42.837	Drosophila_melanogaster
ENSACAG00000009655	CPSF1	82	91.111	ENSETEG00000006022	CPSF1	77	91.111	Echinops_telfairi
ENSACAG00000009655	CPSF1	100	82.244	ENSEASG00005010774	CPSF1	93	82.244	Equus_asinus_asinus
ENSACAG00000009655	CPSF1	100	82.244	ENSECAG00000022209	CPSF1	93	82.244	Equus_caballus
ENSACAG00000009655	CPSF1	100	80.921	ENSEEUG00000000471	CPSF1	93	80.921	Erinaceus_europaeus
ENSACAG00000009655	CPSF1	100	73.495	ENSELUG00000012271	cpsf1	93	73.935	Esox_lucius
ENSACAG00000009655	CPSF1	100	81.683	ENSFDAG00000016060	CPSF1	93	81.683	Fukomys_damarensis
ENSACAG00000009655	CPSF1	100	73.560	ENSFHEG00000016801	cpsf1	93	73.781	Fundulus_heteroclitus
ENSACAG00000009655	CPSF1	100	73.536	ENSGMOG00000000796	cpsf1	93	73.907	Gadus_morhua
ENSACAG00000009655	CPSF1	99	72.584	ENSGAFG00000018890	cpsf1	97	72.734	Gambusia_affinis
ENSACAG00000009655	CPSF1	100	74.222	ENSGACG00000008703	cpsf1	93	74.148	Gasterosteus_aculeatus
ENSACAG00000009655	CPSF1	85	97.163	ENSGAGG00000004276	CPSF1	89	97.163	Gopherus_agassizii
ENSACAG00000009655	CPSF1	100	81.683	ENSGGOG00000016185	CPSF1	93	81.683	Gorilla_gorilla
ENSACAG00000009655	CPSF1	100	75.056	ENSHBUG00000018900	cpsf1	93	75.297	Haplochromis_burtoni
ENSACAG00000009655	CPSF1	100	81.608	ENSHGLG00000016139	CPSF1	93	81.608	Heterocephalus_glaber_female
ENSACAG00000009655	CPSF1	100	81.534	ENSHGLG00100009750	CPSF1	93	81.534	Heterocephalus_glaber_male
ENSACAG00000009655	CPSF1	100	72.906	ENSHCOG00000018509	cpsf1	93	72.794	Hippocampus_comes
ENSACAG00000009655	CPSF1	100	72.366	ENSIPUG00000011259	cpsf1	93	72.587	Ictalurus_punctatus
ENSACAG00000009655	CPSF1	96	80.938	ENSSTOG00000009957	CPSF1	92	80.938	Ictidomys_tridecemlineatus
ENSACAG00000009655	CPSF1	100	81.757	ENSJJAG00000023002	Cpsf1	93	81.757	Jaculus_jaculus
ENSACAG00000009655	CPSF1	91	85.514	ENSKMAG00000001940	cpsf1	91	85.514	Kryptolebias_marmoratus
ENSACAG00000009655	CPSF1	100	73.275	ENSLBEG00000003601	cpsf1	93	73.745	Labrus_bergylta
ENSACAG00000009655	CPSF1	87	75.890	ENSLACG00000000233	CPSF1	84	75.890	Latimeria_chalumnae
ENSACAG00000009655	CPSF1	100	75.111	ENSLOCG00000008484	cpsf1	93	75.519	Lepisosteus_oculatus
ENSACAG00000009655	CPSF1	96	80.985	ENSLAFG00000022601	CPSF1	93	80.985	Loxodonta_africana
ENSACAG00000009655	CPSF1	100	81.473	ENSMFAG00000037013	CPSF1	90	88.657	Macaca_fascicularis
ENSACAG00000009655	CPSF1	100	81.548	ENSMMUG00000007380	CPSF1	88	89.137	Macaca_mulatta
ENSACAG00000009655	CPSF1	96	81.250	ENSMNEG00000043564	CPSF1	92	81.376	Macaca_nemestrina
ENSACAG00000009655	CPSF1	100	81.548	ENSMLEG00000043010	CPSF1	90	88.955	Mandrillus_leucophaeus
ENSACAG00000009655	CPSF1	100	73.822	ENSMAMG00000003803	cpsf1	93	74.093	Mastacembelus_armatus
ENSACAG00000009655	CPSF1	100	72.383	ENSMZEG00005001168	cpsf1	92	72.626	Maylandia_zebra
ENSACAG00000009655	CPSF1	100	81.236	ENSMAUG00000003601	Cpsf1	93	81.236	Mesocricetus_auratus
ENSACAG00000009655	CPSF1	100	81.608	ENSMICG00000015767	CPSF1	93	81.608	Microcebus_murinus
ENSACAG00000009655	CPSF1	100	81.534	ENSMOCG00000022758	Cpsf1	93	81.534	Microtus_ochrogaster
ENSACAG00000009655	CPSF1	100	74.481	ENSMMOG00000021245	cpsf1	93	74.629	Mola_mola
ENSACAG00000009655	CPSF1	100	83.556	ENSMODG00000010755	CPSF1	93	83.556	Monodelphis_domestica
ENSACAG00000009655	CPSF1	100	73.110	ENSMALG00000020545	cpsf1	93	73.183	Monopterus_albus
ENSACAG00000009655	CPSF1	100	81.832	MGP_CAROLIEiJ_G0019936	Cpsf1	93	81.832	Mus_caroli
ENSACAG00000009655	CPSF1	100	81.757	ENSMUSG00000034022	Cpsf1	93	81.757	Mus_musculus
ENSACAG00000009655	CPSF1	100	81.906	MGP_PahariEiJ_G0019946	Cpsf1	93	81.906	Mus_pahari
ENSACAG00000009655	CPSF1	100	81.757	MGP_SPRETEiJ_G0020839	Cpsf1	93	81.757	Mus_spretus
ENSACAG00000009655	CPSF1	94	81.660	ENSMPUG00000006419	CPSF1	87	81.660	Mustela_putorius_furo
ENSACAG00000009655	CPSF1	100	81.832	ENSNGAG00000022460	Cpsf1	93	81.832	Nannospalax_galili
ENSACAG00000009655	CPSF1	100	70.178	ENSNBRG00000000813	cpsf1	92	70.178	Neolamprologus_brichardi
ENSACAG00000009655	CPSF1	85	90.517	ENSNLEG00000010633	-	90	90.517	Nomascus_leucogenys
ENSACAG00000009655	CPSF1	81	91.045	ENSMEUG00000014922	CPSF1	78	91.045	Notamacropus_eugenii
ENSACAG00000009655	CPSF1	54	80.132	ENSOPRG00000004693	-	59	80.132	Ochotona_princeps
ENSACAG00000009655	CPSF1	100	81.683	ENSODEG00000013995	CPSF1	93	81.683	Octodon_degus
ENSACAG00000009655	CPSF1	100	75.353	ENSONIG00000007676	cpsf1	93	75.481	Oreochromis_niloticus
ENSACAG00000009655	CPSF1	62	87.143	ENSOANG00000010716	CPSF1	87	87.143	Ornithorhynchus_anatinus
ENSACAG00000009655	CPSF1	100	74.945	ENSORLG00000013544	cpsf1	92	81.557	Oryzias_latipes
ENSACAG00000009655	CPSF1	100	75.018	ENSORLG00020021693	cpsf1	92	81.557	Oryzias_latipes_hni
ENSACAG00000009655	CPSF1	100	75.018	ENSORLG00015009979	cpsf1	93	74.726	Oryzias_latipes_hsok
ENSACAG00000009655	CPSF1	100	74.708	ENSOMEG00000011849	cpsf1	93	74.854	Oryzias_melastigma
ENSACAG00000009655	CPSF1	100	81.696	ENSOGAG00000000315	CPSF1	93	81.696	Otolemur_garnettii
ENSACAG00000009655	CPSF1	51	79.365	ENSOARG00000013594	-	89	79.365	Ovis_aries
ENSACAG00000009655	CPSF1	100	81.771	ENSPPAG00000019280	CPSF1	93	81.771	Pan_paniscus
ENSACAG00000009655	CPSF1	100	81.771	ENSPTRG00000051253	-	93	80.356	Pan_troglodytes
ENSACAG00000009655	CPSF1	100	81.771	ENSPTRG00000049288	-	93	81.771	Pan_troglodytes
ENSACAG00000009655	CPSF1	96	81.327	ENSPANG00000015005	CPSF1	92	81.453	Papio_anubis
ENSACAG00000009655	CPSF1	100	76.427	ENSPKIG00000002582	cpsf1	93	76.649	Paramormyrops_kingsleyae
ENSACAG00000009655	CPSF1	100	83.704	ENSPCIG00000009035	CPSF1	93	83.704	Phascolarctos_cinereus
ENSACAG00000009655	CPSF1	100	73.004	ENSPFOG00000012870	cpsf1	93	73.149	Poecilia_formosa
ENSACAG00000009655	CPSF1	100	73.057	ENSPREG00000016307	cpsf1	93	73.420	Poecilia_reticulata
ENSACAG00000009655	CPSF1	99	76.929	ENSPPYG00000018973	CPSF1	93	76.854	Pongo_abelii
ENSACAG00000009655	CPSF1	90	87.854	ENSPCAG00000011541	CPSF1	85	87.854	Procavia_capensis
ENSACAG00000009655	CPSF1	100	80.491	ENSPCOG00000020001	CPSF1	94	80.417	Propithecus_coquereli
ENSACAG00000009655	CPSF1	91	90.551	ENSPVAG00000006761	CPSF1	84	90.551	Pteropus_vampyrus
ENSACAG00000009655	CPSF1	100	74.085	ENSPNYG00000004906	cpsf1	93	74.250	Pundamilia_nyererei
ENSACAG00000009655	CPSF1	100	73.259	ENSPNAG00000024395	cpsf1	93	73.259	Pygocentrus_nattereri
ENSACAG00000009655	CPSF1	100	81.534	ENSRNOG00000030705	Cpsf1	93	81.534	Rattus_norvegicus
ENSACAG00000009655	CPSF1	100	81.548	ENSRBIG00000044907	CPSF1	89	88.690	Rhinopithecus_bieti
ENSACAG00000009655	CPSF1	100	81.622	ENSRROG00000044861	CPSF1	89	88.690	Rhinopithecus_roxellana
ENSACAG00000009655	CPSF1	96	81.298	ENSSBOG00000027177	CPSF1	92	81.298	Saimiri_boliviensis_boliviensis
ENSACAG00000009655	CPSF1	100	83.556	ENSSHAG00000006500	CPSF1	93	83.556	Sarcophilus_harrisii
ENSACAG00000009655	CPSF1	100	73.891	ENSSFOG00015004606	cpsf1	92	77.044	Scleropages_formosus
ENSACAG00000009655	CPSF1	100	73.328	ENSSMAG00000020547	cpsf1	93	73.638	Scophthalmus_maximus
ENSACAG00000009655	CPSF1	100	74.611	ENSSDUG00000001100	cpsf1	93	74.870	Seriola_dumerili
ENSACAG00000009655	CPSF1	100	74.777	ENSSLDG00000003619	cpsf1	93	74.852	Seriola_lalandi_dorsalis
ENSACAG00000009655	CPSF1	92	89.583	ENSSARG00000003643	CPSF1	88	89.583	Sorex_araneus
ENSACAG00000009655	CPSF1	96	86.724	ENSSPUG00000014396	CPSF1	93	86.724	Sphenodon_punctatus
ENSACAG00000009655	CPSF1	100	73.803	ENSSPAG00000005349	cpsf1	93	74.165	Stegastes_partitus
ENSACAG00000009655	CPSF1	100	81.501	ENSSSCG00000005906	CPSF1	93	81.501	Sus_scrofa
ENSACAG00000009655	CPSF1	96	73.565	ENSTRUG00000013134	cpsf1	92	73.716	Takifugu_rubripes
ENSACAG00000009655	CPSF1	100	74.558	ENSTNIG00000014027	cpsf1	93	74.705	Tetraodon_nigroviridis
ENSACAG00000009655	CPSF1	76	79.795	ENSTBEG00000001756	CPSF1	83	79.452	Tupaia_belangeri
ENSACAG00000009655	CPSF1	89	81.354	ENSTTRG00000001937	CPSF1	83	81.354	Tursiops_truncatus
ENSACAG00000009655	CPSF1	97	81.846	ENSUAMG00000006476	CPSF1	91	81.846	Ursus_americanus
ENSACAG00000009655	CPSF1	100	73.739	ENSXCOG00000003608	cpsf1	93	73.887	Xiphophorus_couchianus
ENSACAG00000009655	CPSF1	100	73.220	ENSXMAG00000005798	cpsf1	93	73.516	Xiphophorus_maculatus