EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACAG00000011841 (Gene tree)
Gene ID: 100561368
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Minus strand
Length: 31564 bases
Position: chr4:143556454-143588017
Accession: 100561368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000011766	PABP	PF00658.18	1.5e-29	1	1
ENSACAP00000011766	RRM_1	PF00076.22	4.2e-88	1	4
ENSACAP00000011766	RRM_1	PF00076.22	4.2e-88	2	4
ENSACAP00000011766	RRM_1	PF00076.22	4.2e-88	3	4
ENSACAP00000011766	RRM_1	PF00076.22	4.2e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000012009	PABPC1L-201	1965	XM_003220629	ENSACAP00000011766	635 (aa)	XP_003220677	G1KLR8

Gene Model

Click here to download ENSACAG00000011841's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03013	RNA transport	KEGG
acs03015	mRNA surveillance pathway	KEGG
acs03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000011841's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACAG00000011841	PABPC1L	57	35.338	ENSACAG00000001569	RBM23	51	34.177
ENSACAG00000011841	PABPC1L	97	68.873	ENSACAG00000002544	PABPC4	98	68.873
ENSACAG00000011841	PABPC1L	57	37.158	ENSACAG00000010019	SF3B4	71	37.158
ENSACAG00000011841	PABPC1L	61	34.940	ENSACAG00000004527	ELAVL4	72	34.940
ENSACAG00000011841	PABPC1L	99	69.016	ENSACAG00000016470	PABPC1	99	69.016
ENSACAG00000011841	PABPC1L	61	36.145	ENSACAG00000017521	ELAVL2	80	36.145

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000011841	PABPC1L	98	74.478	ENSG00000101104	PABPC1L	98	82.716	Homo_sapiens
ENSACAG00000011841	PABPC1L	99	70.111	ENSAPOG00000010842	pabpc1l	99	70.317	Acanthochromis_polyacanthus
ENSACAG00000011841	PABPC1L	98	68.865	ENSAMEG00000004099	PABPC1L	99	69.585	Ailuropoda_melanoleuca
ENSACAG00000011841	PABPC1L	99	73.768	ENSACIG00000021004	-	99	79.024	Amphilophus_citrinellus
ENSACAG00000011841	PABPC1L	99	70.440	ENSAOCG00000006167	-	99	70.978	Amphiprion_ocellaris
ENSACAG00000011841	PABPC1L	99	71.451	ENSAPEG00000010558	-	98	83.568	Amphiprion_percula
ENSACAG00000011841	PABPC1L	99	73.693	ENSATEG00000007428	pabpc1l	99	73.693	Anabas_testudineus
ENSACAG00000011841	PABPC1L	97	82.581	ENSAPLG00000008415	PABPC1L	99	82.428	Anas_platyrhynchos
ENSACAG00000011841	PABPC1L	98	73.836	ENSANAG00000026826	PABPC1L	99	73.836	Aotus_nancymaae
ENSACAG00000011841	PABPC1L	99	74.250	ENSACLG00000024791	pabpc1l	99	74.250	Astatotilapia_calliptera
ENSACAG00000011841	PABPC1L	99	76.899	ENSAMXG00000013552	pabpc1l	99	76.899	Astyanax_mexicanus
ENSACAG00000011841	PABPC1L	54	94.643	ENSBTAG00000055300	-	100	94.643	Bos_taurus
ENSACAG00000011841	PABPC1L	59	73.469	ENSBTAG00000016849	PABPC1L	74	73.469	Bos_taurus
ENSACAG00000011841	PABPC1L	98	74.318	ENSCJAG00000017628	PABPC1L	99	74.318	Callithrix_jacchus
ENSACAG00000011841	PABPC1L	58	81.034	ENSCJAG00000038506	-	100	81.034	Callithrix_jacchus
ENSACAG00000011841	PABPC1L	98	68.944	ENSCAFG00000009573	PABPC1L	99	68.944	Canis_familiaris
ENSACAG00000011841	PABPC1L	98	73.836	ENSCAFG00020013828	PABPC1L	99	73.836	Canis_lupus_dingo
ENSACAG00000011841	PABPC1L	97	72.964	ENSCHIG00000025759	PABPC1L	91	72.964	Capra_hircus
ENSACAG00000011841	PABPC1L	98	72.713	ENSTSYG00000006645	PABPC1L	99	72.713	Carlito_syrichta
ENSACAG00000011841	PABPC1L	97	67.207	ENSCAPG00000014519	PABPC1L	99	67.207	Cavia_aperea
ENSACAG00000011841	PABPC1L	98	70.560	ENSCPOG00000013633	PABPC1L	99	70.560	Cavia_porcellus
ENSACAG00000011841	PABPC1L	98	73.836	ENSCCAG00000023338	PABPC1L	99	73.836	Cebus_capucinus
ENSACAG00000011841	PABPC1L	98	74.478	ENSCATG00000034065	PABPC1L	99	74.639	Cercocebus_atys
ENSACAG00000011841	PABPC1L	98	70.240	ENSCLAG00000005298	PABPC1L	99	70.240	Chinchilla_lanigera
ENSACAG00000011841	PABPC1L	98	74.318	ENSCSAG00000014242	PABPC1L	99	74.478	Chlorocebus_sabaeus
ENSACAG00000011841	PABPC1L	70	90.541	ENSCPBG00000017755	-	99	90.541	Chrysemys_picta_bellii
ENSACAG00000011841	PABPC1L	51	83.582	ENSCPBG00000007810	-	84	83.582	Chrysemys_picta_bellii
ENSACAG00000011841	PABPC1L	96	51.690	ENSCING00000002796	-	97	51.690	Ciona_intestinalis
ENSACAG00000011841	PABPC1L	98	57.298	ENSCSAVG00000003102	-	100	85.616	Ciona_savignyi
ENSACAG00000011841	PABPC1L	98	70.332	ENSCSAVG00000004246	-	89	72.857	Ciona_savignyi
ENSACAG00000011841	PABPC1L	98	70.551	ENSCANG00000037530	PABPC1L	99	70.709	Colobus_angolensis_palliatus
ENSACAG00000011841	PABPC1L	98	66.401	ENSCGRG00001021938	Pabpc1l	99	66.401	Cricetulus_griseus_chok1gshd
ENSACAG00000011841	PABPC1L	98	66.401	ENSCGRG00000007946	Pabpc1l	99	66.401	Cricetulus_griseus_crigri
ENSACAG00000011841	PABPC1L	98	67.147	ENSCSEG00000021295	pabpc1l	99	67.147	Cynoglossus_semilaevis
ENSACAG00000011841	PABPC1L	99	72.841	ENSCVAG00000015943	-	86	90.840	Cyprinodon_variegatus
ENSACAG00000011841	PABPC1L	99	75.753	ENSDARG00000002597	pabpc1l	88	91.538	Danio_rerio
ENSACAG00000011841	PABPC1L	98	76.244	ENSDNOG00000048450	PABPC1L	99	76.244	Dasypus_novemcinctus
ENSACAG00000011841	PABPC1L	98	71.429	ENSDORG00000001067	Pabpc1l	99	71.429	Dipodomys_ordii
ENSACAG00000011841	PABPC1L	95	81.707	ENSETEG00000009969	PABPC1L	72	81.707	Echinops_telfairi
ENSACAG00000011841	PABPC1L	51	79.641	ENSEASG00005023407	-	67	79.641	Equus_asinus_asinus
ENSACAG00000011841	PABPC1L	54	92.262	ENSEASG00005023408	-	100	92.262	Equus_asinus_asinus
ENSACAG00000011841	PABPC1L	65	72.574	ENSECAG00000040139	-	84	72.574	Equus_caballus
ENSACAG00000011841	PABPC1L	98	71.292	ENSEEUG00000005978	PABPC1L	99	71.292	Erinaceus_europaeus
ENSACAG00000011841	PABPC1L	99	75.394	ENSELUG00000001811	pabpc1l	95	81.422	Esox_lucius
ENSACAG00000011841	PABPC1L	98	74.799	ENSFCAG00000011692	PABPC1L	99	74.799	Felis_catus
ENSACAG00000011841	PABPC1L	89	79.658	ENSFALG00000005372	PABPC1L	98	79.658	Ficedula_albicollis
ENSACAG00000011841	PABPC1L	98	69.071	ENSFDAG00000008291	PABPC1L	99	69.071	Fukomys_damarensis
ENSACAG00000011841	PABPC1L	99	73.934	ENSFHEG00000003398	pabpc1l	99	73.934	Fundulus_heteroclitus
ENSACAG00000011841	PABPC1L	99	74.086	ENSGMOG00000004437	pabpc1l	100	73.502	Gadus_morhua
ENSACAG00000011841	PABPC1L	82	88.517	ENSGALG00000004123	PABPC1L	98	91.283	Gallus_gallus
ENSACAG00000011841	PABPC1L	99	69.701	ENSGAFG00000021057	pabpc1l	99	69.701	Gambusia_affinis
ENSACAG00000011841	PABPC1L	98	72.742	ENSGACG00000002792	pabpc1l	100	72.742	Gasterosteus_aculeatus
ENSACAG00000011841	PABPC1L	99	87.382	ENSGAGG00000000589	PABPC1L	99	87.382	Gopherus_agassizii
ENSACAG00000011841	PABPC1L	98	74.799	ENSGGOG00000004584	PABPC1L	99	74.799	Gorilla_gorilla
ENSACAG00000011841	PABPC1L	99	74.250	ENSHBUG00000006134	pabpc1l	99	74.250	Haplochromis_burtoni
ENSACAG00000011841	PABPC1L	98	71.040	ENSHGLG00000008434	PABPC1L	99	71.040	Heterocephalus_glaber_female
ENSACAG00000011841	PABPC1L	57	85.955	ENSHGLG00100019506	-	100	85.955	Heterocephalus_glaber_male
ENSACAG00000011841	PABPC1L	98	71.040	ENSHGLG00100012151	PABPC1L	99	71.040	Heterocephalus_glaber_male
ENSACAG00000011841	PABPC1L	98	70.675	ENSHCOG00000009270	pabpc1l	99	70.675	Hippocampus_comes
ENSACAG00000011841	PABPC1L	57	63.218	ENSIPUG00000006760	-	88	63.218	Ictalurus_punctatus
ENSACAG00000011841	PABPC1L	99	77.603	ENSIPUG00000012602	pabpc1l	99	77.603	Ictalurus_punctatus
ENSACAG00000011841	PABPC1L	58	63.793	ENSIPUG00000006780	-	85	63.793	Ictalurus_punctatus
ENSACAG00000011841	PABPC1L	98	72.552	ENSSTOG00000003739	PABPC1L	99	72.552	Ictidomys_tridecemlineatus
ENSACAG00000011841	PABPC1L	99	56.537	ENSJJAG00000022406	Pabpc1l	100	56.537	Jaculus_jaculus
ENSACAG00000011841	PABPC1L	99	73.684	ENSKMAG00000016847	pabpc1l	100	73.684	Kryptolebias_marmoratus
ENSACAG00000011841	PABPC1L	99	72.684	ENSLBEG00000010084	pabpc1l	99	72.684	Labrus_bergylta
ENSACAG00000011841	PABPC1L	99	76.719	ENSLACG00000005762	PABPC1L	98	79.592	Latimeria_chalumnae
ENSACAG00000011841	PABPC1L	99	79.239	ENSLOCG00000007519	pabpc1l	99	79.239	Lepisosteus_oculatus
ENSACAG00000011841	PABPC1L	98	74.080	ENSLAFG00000003553	PABPC1L	100	74.080	Loxodonta_africana
ENSACAG00000011841	PABPC1L	98	74.799	ENSMFAG00000040365	PABPC1L	99	74.960	Macaca_fascicularis
ENSACAG00000011841	PABPC1L	98	73.194	ENSMNEG00000032298	PABPC1L	99	73.355	Macaca_nemestrina
ENSACAG00000011841	PABPC1L	98	74.478	ENSMLEG00000043139	PABPC1L	99	74.639	Mandrillus_leucophaeus
ENSACAG00000011841	PABPC1L	96	73.443	ENSMAMG00000011854	pabpc1l	97	73.443	Mastacembelus_armatus
ENSACAG00000011841	PABPC1L	99	74.250	ENSMZEG00005023713	pabpc1l	99	74.250	Maylandia_zebra
ENSACAG00000011841	PABPC1L	99	83.912	ENSMGAG00000003674	PABPC1L	100	83.912	Meleagris_gallopavo
ENSACAG00000011841	PABPC1L	98	64.800	ENSMOCG00000013186	Pabpc1l	99	64.800	Microtus_ochrogaster
ENSACAG00000011841	PABPC1L	99	73.726	ENSMMOG00000020574	-	90	91.538	Mola_mola
ENSACAG00000011841	PABPC1L	96	78.211	ENSMODG00000016198	PABPC1L	99	78.211	Monodelphis_domestica
ENSACAG00000011841	PABPC1L	96	73.856	ENSMALG00000021622	pabpc1l	100	73.856	Monopterus_albus
ENSACAG00000011841	PABPC1L	99	65.127	MGP_CAROLIEiJ_G0024627	Pabpc1l	100	65.127	Mus_caroli
ENSACAG00000011841	PABPC1L	99	64.968	ENSMUSG00000054582	Pabpc1l	100	64.968	Mus_musculus
ENSACAG00000011841	PABPC1L	99	65.287	MGP_PahariEiJ_G0026071	Pabpc1l	99	65.287	Mus_pahari
ENSACAG00000011841	PABPC1L	99	65.127	MGP_SPRETEiJ_G0025549	Pabpc1l	100	65.127	Mus_spretus
ENSACAG00000011841	PABPC1L	98	74.478	ENSMPUG00000017646	PABPC1L	99	74.478	Mustela_putorius_furo
ENSACAG00000011841	PABPC1L	97	69.048	ENSMLUG00000006324	PABPC1L	98	69.048	Myotis_lucifugus
ENSACAG00000011841	PABPC1L	98	66.986	ENSNGAG00000010458	Pabpc1l	99	66.986	Nannospalax_galili
ENSACAG00000011841	PABPC1L	99	74.841	ENSNBRG00000016633	pabpc1l	99	76.765	Neolamprologus_brichardi
ENSACAG00000011841	PABPC1L	89	71.809	ENSMEUG00000007905	-	89	71.809	Notamacropus_eugenii
ENSACAG00000011841	PABPC1L	98	72.392	ENSOPRG00000011846	PABPC1L	99	72.392	Ochotona_princeps
ENSACAG00000011841	PABPC1L	56	79.375	ENSODEG00000002920	-	97	79.375	Octodon_degus
ENSACAG00000011841	PABPC1L	98	65.329	ENSODEG00000015482	PABPC1L	99	65.329	Octodon_degus
ENSACAG00000011841	PABPC1L	99	74.566	ENSONIG00000017314	pabpc1l	99	74.566	Oreochromis_niloticus
ENSACAG00000011841	PABPC1L	89	67.254	ENSOANG00000015793	-	100	67.254	Ornithorhynchus_anatinus
ENSACAG00000011841	PABPC1L	98	69.632	ENSOCUG00000003005	PABPC1L	99	69.632	Oryctolagus_cuniculus
ENSACAG00000011841	PABPC1L	97	78.177	ENSORLG00000010322	pabpc1l	99	78.177	Oryzias_latipes
ENSACAG00000011841	PABPC1L	97	78.177	ENSORLG00020021193	pabpc1l	99	78.177	Oryzias_latipes_hni
ENSACAG00000011841	PABPC1L	97	78.177	ENSORLG00015017018	pabpc1l	99	78.177	Oryzias_latipes_hsok
ENSACAG00000011841	PABPC1L	99	69.624	ENSOMEG00000010789	pabpc1l	99	69.624	Oryzias_melastigma
ENSACAG00000011841	PABPC1L	98	72.930	ENSOGAG00000032999	PABPC1L	99	72.930	Otolemur_garnettii
ENSACAG00000011841	PABPC1L	98	73.355	ENSOARG00000004578	PABPC1L	99	73.355	Ovis_aries
ENSACAG00000011841	PABPC1L	98	74.639	ENSPPAG00000039677	PABPC1L	99	74.799	Pan_paniscus
ENSACAG00000011841	PABPC1L	61	73.457	ENSPPRG00000019327	-	98	73.457	Panthera_pardus
ENSACAG00000011841	PABPC1L	97	74.554	ENSPTIG00000006524	PABPC1L	99	74.554	Panthera_tigris_altaica
ENSACAG00000011841	PABPC1L	61	83.025	ENSPTRG00000013531	PABPC1L	98	83.025	Pan_troglodytes
ENSACAG00000011841	PABPC1L	98	74.478	ENSPANG00000018788	PABPC1L	99	74.639	Papio_anubis
ENSACAG00000011841	PABPC1L	98	76.997	ENSPKIG00000007322	pabpc1l	99	76.997	Paramormyrops_kingsleyae
ENSACAG00000011841	PABPC1L	51	85.496	ENSPKIG00000016810	-	93	85.496	Paramormyrops_kingsleyae
ENSACAG00000011841	PABPC1L	66	91.449	ENSPSIG00000013289	PABPC1L	99	91.449	Pelodiscus_sinensis
ENSACAG00000011841	PABPC1L	70	69.903	ENSPMGG00000023121	-	94	69.903	Periophthalmus_magnuspinnatus
ENSACAG00000011841	PABPC1L	61	89.394	ENSPMGG00000023117	pabpc1l	97	84.651	Periophthalmus_magnuspinnatus
ENSACAG00000011841	PABPC1L	98	64.263	ENSPEMG00000020671	Pabpc1l	99	64.744	Peromyscus_maniculatus_bairdii
ENSACAG00000011841	PABPC1L	99	73.824	ENSPFOG00000013241	pabpc1l	99	73.824	Poecilia_formosa
ENSACAG00000011841	PABPC1L	99	73.824	ENSPLAG00000017490	-	99	73.824	Poecilia_latipinna
ENSACAG00000011841	PABPC1L	51	92.308	ENSPLAG00000023686	-	92	92.308	Poecilia_latipinna
ENSACAG00000011841	PABPC1L	99	73.659	ENSPMEG00000007677	pabpc1l	99	73.659	Poecilia_mexicana
ENSACAG00000011841	PABPC1L	51	92.308	ENSPMEG00000009185	-	88	92.308	Poecilia_mexicana
ENSACAG00000011841	PABPC1L	65	82.809	ENSPREG00000015886	pabpc1l	99	82.809	Poecilia_reticulata
ENSACAG00000011841	PABPC1L	98	74.639	ENSPPYG00000011042	PABPC1L	99	74.639	Pongo_abelii
ENSACAG00000011841	PABPC1L	60	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSACAG00000011841	PABPC1L	99	73.802	ENSPCOG00000020630	PABPC1L	100	73.802	Propithecus_coquereli
ENSACAG00000011841	PABPC1L	98	71.746	ENSPVAG00000012663	PABPC1L	99	71.746	Pteropus_vampyrus
ENSACAG00000011841	PABPC1L	99	71.451	ENSPNYG00000004101	pabpc1l	99	76.765	Pundamilia_nyererei
ENSACAG00000011841	PABPC1L	99	70.253	ENSPNAG00000021248	pabpc1l	99	70.253	Pygocentrus_nattereri
ENSACAG00000011841	PABPC1L	98	65.072	ENSRNOG00000012750	Pabpc1l	99	65.072	Rattus_norvegicus
ENSACAG00000011841	PABPC1L	98	74.478	ENSRBIG00000035381	PABPC1L	99	74.639	Rhinopithecus_bieti
ENSACAG00000011841	PABPC1L	98	74.318	ENSRROG00000044498	PABPC1L	99	74.478	Rhinopithecus_roxellana
ENSACAG00000011841	PABPC1L	98	73.836	ENSSBOG00000009532	-	99	73.836	Saimiri_boliviensis_boliviensis
ENSACAG00000011841	PABPC1L	97	71.169	ENSSHAG00000011446	PABPC1L	100	71.169	Sarcophilus_harrisii
ENSACAG00000011841	PABPC1L	98	77.316	ENSSFOG00015017304	pabpc1l	99	77.316	Scleropages_formosus
ENSACAG00000011841	PABPC1L	99	72.655	ENSSMAG00000010516	pabpc1l	98	88.235	Scophthalmus_maximus
ENSACAG00000011841	PABPC1L	99	73.934	ENSSDUG00000014743	pabpc1l	99	73.934	Seriola_dumerili
ENSACAG00000011841	PABPC1L	96	73.849	ENSSLDG00000006981	pabpc1l	98	88.517	Seriola_lalandi_dorsalis
ENSACAG00000011841	PABPC1L	100	85.354	ENSSPUG00000004233	PABPC1L	100	85.354	Sphenodon_punctatus
ENSACAG00000011841	PABPC1L	99	63.593	ENSSPAG00000017137	pabpc1l	99	63.593	Stegastes_partitus
ENSACAG00000011841	PABPC1L	99	72.843	ENSSSCG00000007382	PABPC1L	99	72.843	Sus_scrofa
ENSACAG00000011841	PABPC1L	99	82.629	ENSTGUG00000005114	PABPC1L	100	82.629	Taeniopygia_guttata
ENSACAG00000011841	PABPC1L	96	73.127	ENSTRUG00000011085	pabpc1l	97	73.127	Takifugu_rubripes
ENSACAG00000011841	PABPC1L	99	70.978	ENSTNIG00000017903	pabpc1l	99	70.978	Tetraodon_nigroviridis
ENSACAG00000011841	PABPC1L	93	83.562	ENSTBEG00000002851	PABPC1L	78	83.562	Tupaia_belangeri
ENSACAG00000011841	PABPC1L	93	71.524	ENSTTRG00000007618	PABPC1L	100	71.778	Tursiops_truncatus
ENSACAG00000011841	PABPC1L	98	71.589	ENSUAMG00000017682	PABPC1L	99	71.589	Ursus_americanus
ENSACAG00000011841	PABPC1L	65	80.886	ENSUMAG00000025436	PABPC1L	92	80.886	Ursus_maritimus
ENSACAG00000011841	PABPC1L	97	81.028	ENSVVUG00000018939	PABPC1L	98	81.028	Vulpes_vulpes
ENSACAG00000011841	PABPC1L	99	75.868	ENSXETG00000022831	pabpc1l	100	75.868	Xenopus_tropicalis
ENSACAG00000011841	PABPC1L	99	73.851	ENSXCOG00000005459	pabpc1l	99	87.234	Xiphophorus_couchianus
ENSACAG00000011841	PABPC1L	99	73.354	ENSXMAG00000017135	pabpc1l	99	73.354	Xiphophorus_maculatus