EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000012941 (Gene tree)
Gene ID: 100558379
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 10604 bases
Position: chrGL343725.1:245187-255790
Accession: 100558379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000012704	zf-CCCH	PF00642.24	1.8e-20	1	2
ENSACAP00000012704	zf-CCCH	PF00642.24	1.8e-20	2	2
ENSACAP00000012704	zf-CCHC	PF00098.23	3.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000012960	CPSF4-201	5499	XM_003228804	ENSACAP00000012704	302 (aa)	XP_003228852	H9GJF7

Gene Model

Click here to download ENSACAG00000012941's gene model file

Pathways

Pathway ID	Pathway Name	Source
acs03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000012941's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000012941	CPSF4	89	93.680	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSACAG00000012941	CPSF4	60	73.077	ENSAPOG00000004921	cpsf4	100	73.077	Acanthochromis_polyacanthus
ENSACAG00000012941	CPSF4	89	93.309	ENSAMEG00000006252	CPSF4	100	93.309	Ailuropoda_melanoleuca
ENSACAG00000012941	CPSF4	89	76.952	ENSACIG00000009248	cpsf4	100	75.556	Amphilophus_citrinellus
ENSACAG00000012941	CPSF4	89	83.704	ENSAOCG00000019616	cpsf4	100	83.704	Amphiprion_ocellaris
ENSACAG00000012941	CPSF4	89	83.704	ENSAPEG00000011679	cpsf4	100	83.704	Amphiprion_percula
ENSACAG00000012941	CPSF4	89	82.721	ENSATEG00000007010	cpsf4	100	82.721	Anabas_testudineus
ENSACAG00000012941	CPSF4	89	93.680	ENSANAG00000021360	CPSF4	100	93.680	Aotus_nancymaae
ENSACAG00000012941	CPSF4	89	82.593	ENSACLG00000010374	cpsf4	100	82.593	Astatotilapia_calliptera
ENSACAG00000012941	CPSF4	89	83.395	ENSAMXG00000031647	cpsf4	100	82.288	Astyanax_mexicanus
ENSACAG00000012941	CPSF4	89	82.156	ENSBTAG00000002090	CPSF4	100	82.900	Bos_taurus
ENSACAG00000012941	CPSF4	89	93.680	ENSCJAG00000015826	CPSF4	100	93.680	Callithrix_jacchus
ENSACAG00000012941	CPSF4	89	93.309	ENSCAFG00000015036	CPSF4	100	93.309	Canis_familiaris
ENSACAG00000012941	CPSF4	89	87.361	ENSCAFG00020014462	CPSF4	100	87.361	Canis_lupus_dingo
ENSACAG00000012941	CPSF4	89	93.309	ENSCHIG00000014313	CPSF4	100	93.309	Capra_hircus
ENSACAG00000012941	CPSF4	79	78.838	ENSTSYG00000008195	-	99	76.800	Carlito_syrichta
ENSACAG00000012941	CPSF4	89	77.778	ENSTSYG00000014604	-	100	75.926	Carlito_syrichta
ENSACAG00000012941	CPSF4	89	83.643	ENSTSYG00000005712	-	100	84.015	Carlito_syrichta
ENSACAG00000012941	CPSF4	72	94.037	ENSCAPG00000013881	CPSF4	87	94.037	Cavia_aperea
ENSACAG00000012941	CPSF4	89	82.900	ENSCPOG00000001783	CPSF4	100	83.271	Cavia_porcellus
ENSACAG00000012941	CPSF4	89	93.680	ENSCCAG00000028291	CPSF4	100	93.680	Cebus_capucinus
ENSACAG00000012941	CPSF4	89	93.680	ENSCATG00000038440	CPSF4	100	93.680	Cercocebus_atys
ENSACAG00000012941	CPSF4	89	93.309	ENSCLAG00000007050	CPSF4	100	93.309	Chinchilla_lanigera
ENSACAG00000012941	CPSF4	89	93.680	ENSCSAG00000017795	CPSF4	100	93.680	Chlorocebus_sabaeus
ENSACAG00000012941	CPSF4	72	97.222	ENSCPBG00000020869	CPSF4	100	97.222	Chrysemys_picta_bellii
ENSACAG00000012941	CPSF4	55	80.606	ENSCPBG00000010269	-	100	80.120	Chrysemys_picta_bellii
ENSACAG00000012941	CPSF4	86	55.556	ENSCING00000021080	-	97	55.000	Ciona_intestinalis
ENSACAG00000012941	CPSF4	86	54.417	ENSCSAVG00000011469	-	97	53.737	Ciona_savignyi
ENSACAG00000012941	CPSF4	89	93.680	ENSCANG00000019384	CPSF4	100	93.680	Colobus_angolensis_palliatus
ENSACAG00000012941	CPSF4	89	82.900	ENSCGRG00001024184	Cpsf4	100	83.271	Cricetulus_griseus_chok1gshd
ENSACAG00000012941	CPSF4	89	93.309	ENSCGRG00000013892	Cpsf4	100	93.309	Cricetulus_griseus_crigri
ENSACAG00000012941	CPSF4	89	82.593	ENSCSEG00000019055	cpsf4	100	82.593	Cynoglossus_semilaevis
ENSACAG00000012941	CPSF4	89	81.852	ENSCVAG00000016528	cpsf4	100	81.852	Cyprinodon_variegatus
ENSACAG00000012941	CPSF4	89	83.764	ENSDARG00000020217	cpsf4	100	83.764	Danio_rerio
ENSACAG00000012941	CPSF4	89	93.680	ENSDNOG00000006344	CPSF4	100	93.680	Dasypus_novemcinctus
ENSACAG00000012941	CPSF4	72	94.009	ENSDORG00000000742	Cpsf4	100	94.009	Dipodomys_ordii
ENSACAG00000012941	CPSF4	89	54.452	FBgn0015621	Clp	99	54.795	Drosophila_melanogaster
ENSACAG00000012941	CPSF4	62	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSACAG00000012941	CPSF4	88	65.543	ENSEBUG00000012552	cpsf4	98	65.543	Eptatretus_burgeri
ENSACAG00000012941	CPSF4	89	82.900	ENSEASG00005002487	CPSF4	100	83.271	Equus_asinus_asinus
ENSACAG00000012941	CPSF4	89	93.309	ENSECAG00000007525	CPSF4	100	93.309	Equus_caballus
ENSACAG00000012941	CPSF4	56	97.015	ENSEEUG00000002158	CPSF4	73	97.015	Erinaceus_europaeus
ENSACAG00000012941	CPSF4	89	82.117	ENSELUG00000011481	cpsf4	100	80.292	Esox_lucius
ENSACAG00000012941	CPSF4	89	93.309	ENSFCAG00000015070	CPSF4	100	93.309	Felis_catus
ENSACAG00000012941	CPSF4	55	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSACAG00000012941	CPSF4	89	85.874	ENSFALG00000013799	CPSF4	100	83.271	Ficedula_albicollis
ENSACAG00000012941	CPSF4	80	93.416	ENSFDAG00000014092	CPSF4	100	93.416	Fukomys_damarensis
ENSACAG00000012941	CPSF4	89	80.370	ENSFHEG00000010880	cpsf4	100	80.370	Fundulus_heteroclitus
ENSACAG00000012941	CPSF4	89	77.122	ENSGMOG00000002330	cpsf4	100	75.182	Gadus_morhua
ENSACAG00000012941	CPSF4	89	85.502	ENSGALG00000004714	CPSF4	100	83.271	Gallus_gallus
ENSACAG00000012941	CPSF4	88	39.247	ENSGALG00000004441	-	92	38.710	Gallus_gallus
ENSACAG00000012941	CPSF4	89	81.111	ENSGAFG00000010580	cpsf4	100	81.111	Gambusia_affinis
ENSACAG00000012941	CPSF4	89	74.908	ENSGACG00000007792	cpsf4	100	74.539	Gasterosteus_aculeatus
ENSACAG00000012941	CPSF4	55	80.606	ENSGAGG00000020579	-	92	80.606	Gopherus_agassizii
ENSACAG00000012941	CPSF4	89	95.911	ENSGAGG00000021835	CPSF4	100	95.911	Gopherus_agassizii
ENSACAG00000012941	CPSF4	89	93.680	ENSGGOG00000015131	CPSF4	100	93.680	Gorilla_gorilla
ENSACAG00000012941	CPSF4	89	82.593	ENSHBUG00000013699	cpsf4	100	82.593	Haplochromis_burtoni
ENSACAG00000012941	CPSF4	89	92.251	ENSHGLG00000017150	CPSF4	100	92.251	Heterocephalus_glaber_female
ENSACAG00000012941	CPSF4	59	66.102	ENSHGLG00100017302	-	100	51.301	Heterocephalus_glaber_male
ENSACAG00000012941	CPSF4	77	91.102	ENSHGLG00100009215	-	100	91.102	Heterocephalus_glaber_male
ENSACAG00000012941	CPSF4	89	78.889	ENSHCOG00000004397	cpsf4	100	78.889	Hippocampus_comes
ENSACAG00000012941	CPSF4	89	82.288	ENSIPUG00000017147	cpsf4	100	82.288	Ictalurus_punctatus
ENSACAG00000012941	CPSF4	89	93.309	ENSSTOG00000001688	CPSF4	100	93.309	Ictidomys_tridecemlineatus
ENSACAG00000012941	CPSF4	89	93.309	ENSJJAG00000019426	Cpsf4	100	93.309	Jaculus_jaculus
ENSACAG00000012941	CPSF4	89	80.741	ENSKMAG00000015642	cpsf4	100	80.741	Kryptolebias_marmoratus
ENSACAG00000012941	CPSF4	89	88.148	ENSLACG00000010938	CPSF4	100	88.148	Latimeria_chalumnae
ENSACAG00000012941	CPSF4	89	60.370	ENSLACG00000018470	-	100	60.370	Latimeria_chalumnae
ENSACAG00000012941	CPSF4	89	88.104	ENSLOCG00000004814	cpsf4	100	88.104	Lepisosteus_oculatus
ENSACAG00000012941	CPSF4	89	92.937	ENSLAFG00000000159	CPSF4	100	92.937	Loxodonta_africana
ENSACAG00000012941	CPSF4	89	93.680	ENSMFAG00000001462	CPSF4	100	93.680	Macaca_fascicularis
ENSACAG00000012941	CPSF4	89	93.680	ENSMMUG00000019191	CPSF4	100	93.680	Macaca_mulatta
ENSACAG00000012941	CPSF4	89	93.680	ENSMNEG00000032306	CPSF4	100	93.680	Macaca_nemestrina
ENSACAG00000012941	CPSF4	89	93.680	ENSMLEG00000034721	CPSF4	100	93.680	Mandrillus_leucophaeus
ENSACAG00000012941	CPSF4	89	82.222	ENSMAMG00000006244	cpsf4	100	80.220	Mastacembelus_armatus
ENSACAG00000012941	CPSF4	89	82.593	ENSMZEG00005007515	cpsf4	100	82.593	Maylandia_zebra
ENSACAG00000012941	CPSF4	78	84.681	ENSMGAG00000004235	CPSF4	100	82.128	Meleagris_gallopavo
ENSACAG00000012941	CPSF4	89	93.309	ENSMAUG00000021253	Cpsf4	100	93.309	Mesocricetus_auratus
ENSACAG00000012941	CPSF4	89	93.309	ENSMICG00000017429	CPSF4	100	93.309	Microcebus_murinus
ENSACAG00000012941	CPSF4	89	93.309	ENSMOCG00000014901	Cpsf4	100	93.309	Microtus_ochrogaster
ENSACAG00000012941	CPSF4	89	81.852	ENSMMOG00000001813	cpsf4	100	81.852	Mola_mola
ENSACAG00000012941	CPSF4	89	94.796	ENSMODG00000001367	CPSF4	100	94.796	Monodelphis_domestica
ENSACAG00000012941	CPSF4	89	81.481	ENSMALG00000012611	cpsf4	100	79.259	Monopterus_albus
ENSACAG00000012941	CPSF4	89	93.309	MGP_CAROLIEiJ_G0028012	Cpsf4	100	93.309	Mus_caroli
ENSACAG00000012941	CPSF4	89	93.309	ENSMUSG00000029625	Cpsf4	100	93.309	Mus_musculus
ENSACAG00000012941	CPSF4	89	93.309	MGP_PahariEiJ_G0024581	Cpsf4	100	93.309	Mus_pahari
ENSACAG00000012941	CPSF4	89	93.309	MGP_SPRETEiJ_G0029013	Cpsf4	100	93.309	Mus_spretus
ENSACAG00000012941	CPSF4	89	93.309	ENSMPUG00000016508	CPSF4	100	93.309	Mustela_putorius_furo
ENSACAG00000012941	CPSF4	78	80.851	ENSMLUG00000010980	CPSF4	100	81.702	Myotis_lucifugus
ENSACAG00000012941	CPSF4	89	93.309	ENSNGAG00000001567	Cpsf4	100	93.309	Nannospalax_galili
ENSACAG00000012941	CPSF4	81	82.114	ENSNBRG00000003943	cpsf4	98	82.114	Neolamprologus_brichardi
ENSACAG00000012941	CPSF4	89	90.706	ENSNLEG00000011074	CPSF4	100	90.706	Nomascus_leucogenys
ENSACAG00000012941	CPSF4	89	94.796	ENSMEUG00000006955	CPSF4	100	94.796	Notamacropus_eugenii
ENSACAG00000012941	CPSF4	89	92.937	ENSOPRG00000013663	CPSF4	100	92.937	Ochotona_princeps
ENSACAG00000012941	CPSF4	88	72.075	ENSODEG00000018283	-	91	70.566	Octodon_degus
ENSACAG00000012941	CPSF4	89	93.309	ENSODEG00000011181	-	100	93.309	Octodon_degus
ENSACAG00000012941	CPSF4	89	70.696	ENSODEG00000009779	-	100	70.696	Octodon_degus
ENSACAG00000012941	CPSF4	89	82.593	ENSONIG00000008495	cpsf4	100	82.593	Oreochromis_niloticus
ENSACAG00000012941	CPSF4	89	52.878	ENSOANG00000009568	-	100	51.799	Ornithorhynchus_anatinus
ENSACAG00000012941	CPSF4	78	93.191	ENSOANG00000007729	CPSF4	100	93.191	Ornithorhynchus_anatinus
ENSACAG00000012941	CPSF4	95	89.199	ENSOCUG00000002437	CPSF4	75	89.199	Oryctolagus_cuniculus
ENSACAG00000012941	CPSF4	89	81.784	ENSORLG00000022798	cpsf4	100	81.784	Oryzias_latipes
ENSACAG00000012941	CPSF4	89	81.784	ENSORLG00020008548	cpsf4	100	81.784	Oryzias_latipes_hni
ENSACAG00000012941	CPSF4	89	81.413	ENSORLG00015019575	cpsf4	100	81.413	Oryzias_latipes_hsok
ENSACAG00000012941	CPSF4	89	80.669	ENSOMEG00000005176	cpsf4	100	80.669	Oryzias_melastigma
ENSACAG00000012941	CPSF4	89	93.309	ENSOGAG00000010884	CPSF4	100	93.309	Otolemur_garnettii
ENSACAG00000012941	CPSF4	89	84.249	ENSOARG00000018668	CPSF4	100	83.150	Ovis_aries
ENSACAG00000012941	CPSF4	89	93.680	ENSPPAG00000043355	CPSF4	100	93.680	Pan_paniscus
ENSACAG00000012941	CPSF4	89	93.309	ENSPPRG00000003134	CPSF4	100	93.309	Panthera_pardus
ENSACAG00000012941	CPSF4	80	94.215	ENSPTIG00000005604	CPSF4	90	94.215	Panthera_tigris_altaica
ENSACAG00000012941	CPSF4	89	93.680	ENSPTRG00000019453	CPSF4	100	93.680	Pan_troglodytes
ENSACAG00000012941	CPSF4	89	93.680	ENSPANG00000023123	CPSF4	100	93.680	Papio_anubis
ENSACAG00000012941	CPSF4	89	83.577	ENSPKIG00000014278	cpsf4	100	83.577	Paramormyrops_kingsleyae
ENSACAG00000012941	CPSF4	72	96.759	ENSPSIG00000011229	CPSF4	100	96.759	Pelodiscus_sinensis
ENSACAG00000012941	CPSF4	72	58.257	ENSPSIG00000018198	-	100	56.306	Pelodiscus_sinensis
ENSACAG00000012941	CPSF4	89	72.862	ENSPMGG00000017735	cpsf4	100	71.004	Periophthalmus_magnuspinnatus
ENSACAG00000012941	CPSF4	89	93.309	ENSPEMG00000004508	Cpsf4	100	93.309	Peromyscus_maniculatus_bairdii
ENSACAG00000012941	CPSF4	89	94.796	ENSPCIG00000024776	CPSF4	100	94.796	Phascolarctos_cinereus
ENSACAG00000012941	CPSF4	89	81.111	ENSPFOG00000014912	cpsf4	100	81.111	Poecilia_formosa
ENSACAG00000012941	CPSF4	89	74.349	ENSPLAG00000009599	cpsf4	100	74.349	Poecilia_latipinna
ENSACAG00000012941	CPSF4	89	81.111	ENSPMEG00000009790	cpsf4	100	81.111	Poecilia_mexicana
ENSACAG00000012941	CPSF4	89	80.370	ENSPREG00000018166	cpsf4	100	77.695	Poecilia_reticulata
ENSACAG00000012941	CPSF4	77	94.017	ENSPPYG00000017378	CPSF4	100	94.017	Pongo_abelii
ENSACAG00000012941	CPSF4	89	92.937	ENSPCAG00000001892	CPSF4	100	92.937	Procavia_capensis
ENSACAG00000012941	CPSF4	89	93.309	ENSPCOG00000012771	CPSF4	100	93.309	Propithecus_coquereli
ENSACAG00000012941	CPSF4	89	86.989	ENSPVAG00000007531	CPSF4	100	86.989	Pteropus_vampyrus
ENSACAG00000012941	CPSF4	89	82.593	ENSPNYG00000018559	cpsf4	100	82.593	Pundamilia_nyererei
ENSACAG00000012941	CPSF4	89	84.074	ENSPNAG00000003736	cpsf4	100	84.074	Pygocentrus_nattereri
ENSACAG00000012941	CPSF4	89	82.156	ENSRNOG00000000985	Cpsf4	100	82.900	Rattus_norvegicus
ENSACAG00000012941	CPSF4	77	94.444	ENSRBIG00000033886	CPSF4	100	94.444	Rhinopithecus_bieti
ENSACAG00000012941	CPSF4	89	85.502	ENSRROG00000040431	CPSF4	100	83.643	Rhinopithecus_roxellana
ENSACAG00000012941	CPSF4	89	93.680	ENSSBOG00000020493	CPSF4	100	93.680	Saimiri_boliviensis_boliviensis
ENSACAG00000012941	CPSF4	89	94.796	ENSSHAG00000011533	CPSF4	100	94.796	Sarcophilus_harrisii
ENSACAG00000012941	CPSF4	89	85.145	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSACAG00000012941	CPSF4	89	76.296	ENSSMAG00000006374	cpsf4	100	75.465	Scophthalmus_maximus
ENSACAG00000012941	CPSF4	89	82.222	ENSSDUG00000018887	cpsf4	100	82.222	Seriola_dumerili
ENSACAG00000012941	CPSF4	89	82.222	ENSSLDG00000019078	cpsf4	100	82.222	Seriola_lalandi_dorsalis
ENSACAG00000012941	CPSF4	77	94.017	ENSSARG00000012416	CPSF4	100	94.017	Sorex_araneus
ENSACAG00000012941	CPSF4	89	94.424	ENSSPUG00000003549	CPSF4	100	94.424	Sphenodon_punctatus
ENSACAG00000012941	CPSF4	85	59.231	ENSSPUG00000014803	-	97	59.302	Sphenodon_punctatus
ENSACAG00000012941	CPSF4	89	77.695	ENSSPAG00000006174	cpsf4	100	75.836	Stegastes_partitus
ENSACAG00000012941	CPSF4	89	85.130	ENSSSCG00000026896	CPSF4	100	83.271	Sus_scrofa
ENSACAG00000012941	CPSF4	89	84.871	ENSTGUG00000007552	CPSF4	100	82.288	Taeniopygia_guttata
ENSACAG00000012941	CPSF4	89	79.336	ENSTRUG00000024220	cpsf4	100	79.336	Takifugu_rubripes
ENSACAG00000012941	CPSF4	89	78.229	ENSTNIG00000006265	cpsf4	100	79.705	Tetraodon_nigroviridis
ENSACAG00000012941	CPSF4	77	84.615	ENSTBEG00000011406	CPSF4	100	84.615	Tupaia_belangeri
ENSACAG00000012941	CPSF4	89	74.721	ENSTTRG00000003007	CPSF4	100	74.721	Tursiops_truncatus
ENSACAG00000012941	CPSF4	82	80.567	ENSUAMG00000008051	CPSF4	85	81.377	Ursus_americanus
ENSACAG00000012941	CPSF4	89	82.156	ENSUMAG00000009474	CPSF4	100	82.900	Ursus_maritimus
ENSACAG00000012941	CPSF4	89	82.528	ENSVVUG00000008824	CPSF4	100	82.900	Vulpes_vulpes
ENSACAG00000012941	CPSF4	88	61.255	ENSXETG00000004641	cpsf4l	99	58.719	Xenopus_tropicalis
ENSACAG00000012941	CPSF4	89	87.097	ENSXETG00000009892	cpsf4	100	87.097	Xenopus_tropicalis
ENSACAG00000012941	CPSF4	89	80.741	ENSXCOG00000016040	cpsf4	100	80.741	Xiphophorus_couchianus
ENSACAG00000012941	CPSF4	89	81.111	ENSXMAG00000024670	cpsf4	100	81.111	Xiphophorus_maculatus