EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACAG00000015999 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Anolis_carolinensis
Status: putative
Strand: Plus strand
Length: 18056 bases
Position: chrGL344710.1:3910-21965
Accession: 100551844
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACAP00000015720	EST1	PF10374.9	2.5e-08	1	1
ENSACAP00000015720	EST1_DNA_bind	PF10373.9	1e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACAT00000016035	-	1690	XM_003230288	ENSACAP00000015720	383 (aa)	XP_003230336	H9GMU5

Gene Model

Click here to download ENSACAG00000015999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACAG00000015999's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACAG00000015999	-	81	53.846	ENSCGRG00001000584	-	63	47.619	Cricetulus_griseus_chok1gshd
ENSACAG00000015999	-	75	55.862	ENSCGRG00000009566	-	63	55.862	Cricetulus_griseus_crigri
ENSACAG00000015999	-	100	90.365	ENSFALG00000001166	-	66	90.365	Ficedula_albicollis
ENSACAG00000015999	-	84	86.378	ENSGALG00000049544	-	66	86.378	Gallus_gallus
ENSACAG00000015999	-	52	53.738	ENSMGAG00000017349	-	80	53.738	Meleagris_gallopavo
ENSACAG00000015999	-	66	57.874	ENSMAUG00000000043	-	62	45.431	Mesocricetus_auratus
ENSACAG00000015999	-	66	60.474	ENSMOCG00000008423	-	62	47.721	Microtus_ochrogaster
ENSACAG00000015999	-	63	37.903	ENSMODG00000021488	-	61	36.842	Monodelphis_domestica
ENSACAG00000015999	-	71	57.143	ENSPEMG00000010022	-	60	46.736	Peromyscus_maniculatus_bairdii
ENSACAG00000015999	-	74	38.811	ENSSSCG00000037182	-	57	35.040	Sus_scrofa
ENSACAG00000015999	-	100	57.883	ENSXCOG00000004379	smg5	50	58.772	Xiphophorus_couchianus