EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000000619 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 10741 bases
Position: chrCCOE01000792.1:804221-814961
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000000920	RNA_bind	PF08675.11	1.4e-33	1	1
ENSACIP00000000970	RNA_bind	PF08675.11	1.5e-33	1	1
ENSACIP00000000920	CAF1	PF04857.20	7.9e-75	1	1
ENSACIP00000000970	CAF1	PF04857.20	2.5e-60	1	1
ENSACIP00000000938	CAF1	PF04857.20	3.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000001016	-	1944	-	ENSACIP00000000970	647 (aa)	-	-
ENSACIT00000000983	-	243	-	ENSACIP00000000938	80 (aa)	-	-
ENSACIT00000000963	-	1881	-	ENSACIP00000000920	626 (aa)	-	-

Gene Model

Click here to download ENSACIG00000000619's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000000619's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000000619	parn	83	76.493	ENSG00000140694	PARN	92	78.333	Homo_sapiens
ENSACIG00000000619	parn	81	86.154	ENSAPOG00000019730	-	100	78.636	Acanthochromis_polyacanthus
ENSACIG00000000619	parn	83	75.605	ENSAMEG00000011208	PARN	83	75.605	Ailuropoda_melanoleuca
ENSACIG00000000619	parn	99	84.664	ENSAOCG00000003465	parn	86	84.664	Amphiprion_ocellaris
ENSACIG00000000619	parn	78	89.243	ENSAPEG00000010661	parn	96	89.243	Amphiprion_percula
ENSACIG00000000619	parn	99	83.881	ENSATEG00000004661	parn	87	83.881	Anabas_testudineus
ENSACIG00000000619	parn	86	73.201	ENSAPLG00000013914	PARN	87	73.741	Anas_platyrhynchos
ENSACIG00000000619	parn	97	69.342	ENSACAG00000004973	PARN	90	69.021	Anolis_carolinensis
ENSACIG00000000619	parn	83	76.493	ENSANAG00000031516	PARN	92	78.333	Aotus_nancymaae
ENSACIG00000000619	parn	99	85.446	ENSACLG00000004742	parn	87	85.446	Astatotilapia_calliptera
ENSACIG00000000619	parn	99	69.922	ENSAMXG00000012390	parn	96	69.735	Astyanax_mexicanus
ENSACIG00000000619	parn	87	70.285	ENSBTAG00000018097	PARN	85	72.655	Bos_taurus
ENSACIG00000000619	parn	83	76.679	ENSCJAG00000015866	PARN	92	78.333	Callithrix_jacchus
ENSACIG00000000619	parn	83	75.373	ENSCAFG00000018795	PARN	83	75.373	Canis_familiaris
ENSACIG00000000619	parn	83	75.560	ENSCAFG00020024126	PARN	83	75.560	Canis_lupus_dingo
ENSACIG00000000619	parn	83	75.560	ENSCHIG00000018143	PARN	83	75.560	Capra_hircus
ENSACIG00000000619	parn	72	53.632	ENSCAPG00000007984	PARN	78	55.876	Cavia_aperea
ENSACIG00000000619	parn	83	76.291	ENSCPOG00000002263	PARN	85	76.291	Cavia_porcellus
ENSACIG00000000619	parn	83	76.679	ENSCCAG00000030367	PARN	92	78.333	Cebus_capucinus
ENSACIG00000000619	parn	83	76.306	ENSCATG00000041368	PARN	95	76.306	Cercocebus_atys
ENSACIG00000000619	parn	83	75.933	ENSCLAG00000015406	PARN	83	75.933	Chinchilla_lanigera
ENSACIG00000000619	parn	83	76.679	ENSCSAG00000008142	PARN	83	76.679	Chlorocebus_sabaeus
ENSACIG00000000619	parn	83	66.667	ENSCHOG00000007014	PARN	88	55.536	Choloepus_hoffmanni
ENSACIG00000000619	parn	77	74.052	ENSCPBG00000006609	PARN	86	73.913	Chrysemys_picta_bellii
ENSACIG00000000619	parn	79	40.713	ENSCING00000010142	-	99	40.713	Ciona_intestinalis
ENSACIG00000000619	parn	84	71.642	ENSCANG00000023734	-	100	61.792	Colobus_angolensis_palliatus
ENSACIG00000000619	parn	76	77.049	ENSCANG00000028849	-	75	79.245	Colobus_angolensis_palliatus
ENSACIG00000000619	parn	83	74.813	ENSCGRG00001012096	Parn	84	74.813	Cricetulus_griseus_chok1gshd
ENSACIG00000000619	parn	83	74.813	ENSCGRG00000004939	Parn	84	74.813	Cricetulus_griseus_crigri
ENSACIG00000000619	parn	99	77.812	ENSCSEG00000002064	parn	100	72.273	Cynoglossus_semilaevis
ENSACIG00000000619	parn	99	79.592	ENSCVAG00000014848	parn	86	79.278	Cyprinodon_variegatus
ENSACIG00000000619	parn	94	67.105	ENSDARG00000102634	parn	100	66.667	Danio_rerio
ENSACIG00000000619	parn	83	75.560	ENSDNOG00000000833	PARN	94	75.560	Dasypus_novemcinctus
ENSACIG00000000619	parn	84	68.657	ENSDORG00000027812	-	100	60.181	Dipodomys_ordii
ENSACIG00000000619	parn	80	73.438	ENSETEG00000014828	-	69	70.076	Echinops_telfairi
ENSACIG00000000619	parn	83	75.746	ENSEASG00005011400	PARN	83	75.746	Equus_asinus_asinus
ENSACIG00000000619	parn	83	75.560	ENSECAG00000017792	PARN	83	75.560	Equus_caballus
ENSACIG00000000619	parn	89	67.606	ENSEEUG00000010370	PARN	60	79.630	Erinaceus_europaeus
ENSACIG00000000619	parn	100	73.488	ENSELUG00000013139	parn	79	73.488	Esox_lucius
ENSACIG00000000619	parn	83	75.933	ENSFCAG00000044961	PARN	83	75.933	Felis_catus
ENSACIG00000000619	parn	86	73.333	ENSFALG00000003911	PARN	85	73.874	Ficedula_albicollis
ENSACIG00000000619	parn	87	72.043	ENSFDAG00000009234	PARN	88	72.043	Fukomys_damarensis
ENSACIG00000000619	parn	100	76.526	ENSFHEG00000013738	parn	92	89.831	Fundulus_heteroclitus
ENSACIG00000000619	parn	86	81.851	ENSGMOG00000003231	parn	99	81.488	Gadus_morhua
ENSACIG00000000619	parn	87	72.776	ENSGALG00000003091	PARN	88	73.310	Gallus_gallus
ENSACIG00000000619	parn	100	78.538	ENSGAFG00000011061	parn	87	78.538	Gambusia_affinis
ENSACIG00000000619	parn	86	86.618	ENSGACG00000019501	parn	89	86.257	Gasterosteus_aculeatus
ENSACIG00000000619	parn	83	76.679	ENSGGOG00000025224	PARN	92	78.333	Gorilla_gorilla
ENSACIG00000000619	parn	99	85.446	ENSHBUG00000017906	parn	93	90.698	Haplochromis_burtoni
ENSACIG00000000619	parn	83	75.187	ENSHGLG00000010886	PARN	83	75.187	Heterocephalus_glaber_female
ENSACIG00000000619	parn	83	75.187	ENSHGLG00100014659	PARN	83	75.187	Heterocephalus_glaber_male
ENSACIG00000000619	parn	86	79.354	ENSHCOG00000008683	parn	95	79.964	Hippocampus_comes
ENSACIG00000000619	parn	85	68.431	ENSIPUG00000012401	parn	81	68.670	Ictalurus_punctatus
ENSACIG00000000619	parn	96	68.404	ENSSTOG00000007519	PARN	91	68.404	Ictidomys_tridecemlineatus
ENSACIG00000000619	parn	85	73.091	ENSJJAG00000023049	Parn	87	73.091	Jaculus_jaculus
ENSACIG00000000619	parn	99	81.221	ENSKMAG00000009462	parn	87	81.221	Kryptolebias_marmoratus
ENSACIG00000000619	parn	99	82.031	ENSLBEG00000009167	parn	93	81.719	Labrus_bergylta
ENSACIG00000000619	parn	78	73.214	ENSLACG00000004207	PARN	100	71.934	Latimeria_chalumnae
ENSACIG00000000619	parn	86	79.964	ENSLOCG00000000715	parn	80	79.964	Lepisosteus_oculatus
ENSACIG00000000619	parn	83	75.933	ENSLAFG00000015036	PARN	84	75.933	Loxodonta_africana
ENSACIG00000000619	parn	83	72.761	ENSMFAG00000044852	PARN	77	82.178	Macaca_fascicularis
ENSACIG00000000619	parn	83	76.679	ENSMMUG00000018849	PARN	83	76.679	Macaca_mulatta
ENSACIG00000000619	parn	83	76.679	ENSMNEG00000045108	PARN	83	76.679	Macaca_nemestrina
ENSACIG00000000619	parn	83	76.493	ENSMLEG00000031743	PARN	83	76.493	Mandrillus_leucophaeus
ENSACIG00000000619	parn	99	83.750	ENSMAMG00000006939	parn	87	83.750	Mastacembelus_armatus
ENSACIG00000000619	parn	99	85.446	ENSMZEG00005013590	parn	94	89.445	Maylandia_zebra
ENSACIG00000000619	parn	83	72.862	ENSMGAG00000001004	PARN	84	72.862	Meleagris_gallopavo
ENSACIG00000000619	parn	83	68.624	ENSMAUG00000008025	Parn	84	68.624	Mesocricetus_auratus
ENSACIG00000000619	parn	97	68.269	ENSMICG00000016053	PARN	92	76.667	Microcebus_murinus
ENSACIG00000000619	parn	91	64.384	ENSMOCG00000022211	Parn	100	76.162	Microtus_ochrogaster
ENSACIG00000000619	parn	88	85.080	ENSMMOG00000011333	parn	92	85.080	Mola_mola
ENSACIG00000000619	parn	77	78.068	ENSMODG00000004915	PARN	99	78.068	Monodelphis_domestica
ENSACIG00000000619	parn	95	82.787	ENSMALG00000019426	parn	97	88.266	Monopterus_albus
ENSACIG00000000619	parn	85	71.583	MGP_CAROLIEiJ_G0020466	Parn	88	71.583	Mus_caroli
ENSACIG00000000619	parn	85	71.123	ENSMUSG00000022685	Parn	100	76.829	Mus_musculus
ENSACIG00000000619	parn	85	71.071	MGP_PahariEiJ_G0016172	Parn	88	71.071	Mus_pahari
ENSACIG00000000619	parn	86	71.150	MGP_SPRETEiJ_G0021361	Parn	89	71.150	Mus_spretus
ENSACIG00000000619	parn	83	76.119	ENSMPUG00000014464	PARN	83	76.119	Mustela_putorius_furo
ENSACIG00000000619	parn	91	64.384	ENSMLUG00000005414	PARN	100	75.354	Myotis_lucifugus
ENSACIG00000000619	parn	91	65.753	ENSNGAG00000024082	-	100	60.455	Nannospalax_galili
ENSACIG00000000619	parn	89	87.456	ENSNBRG00000006805	parn	97	87.456	Neolamprologus_brichardi
ENSACIG00000000619	parn	83	76.679	ENSNLEG00000010241	PARN	92	78.333	Nomascus_leucogenys
ENSACIG00000000619	parn	71	83.784	ENSMEUG00000008178	-	70	83.784	Notamacropus_eugenii
ENSACIG00000000619	parn	81	70.532	ENSOPRG00000012187	PARN	83	70.532	Ochotona_princeps
ENSACIG00000000619	parn	83	73.764	ENSODEG00000001617	PARN	85	73.764	Octodon_degus
ENSACIG00000000619	parn	99	85.759	ENSONIG00000000151	parn	88	90.305	Oreochromis_niloticus
ENSACIG00000000619	parn	96	67.695	ENSOCUG00000000322	PARN	91	67.857	Oryctolagus_cuniculus
ENSACIG00000000619	parn	76	83.607	ENSORLG00000024893	-	100	69.091	Oryzias_latipes
ENSACIG00000000619	parn	99	78.091	ENSORLG00020010313	parn	88	77.934	Oryzias_latipes_hni
ENSACIG00000000619	parn	99	77.778	ENSORLG00015000300	parn	88	77.621	Oryzias_latipes_hsok
ENSACIG00000000619	parn	99	78.091	ENSOMEG00000019555	parn	97	70.455	Oryzias_melastigma
ENSACIG00000000619	parn	76	76.008	ENSOGAG00000014626	PARN	100	76.008	Otolemur_garnettii
ENSACIG00000000619	parn	84	70.149	ENSOARG00000007574	PARN	100	76.970	Ovis_aries
ENSACIG00000000619	parn	83	76.306	ENSPPAG00000031438	PARN	92	78.333	Pan_paniscus
ENSACIG00000000619	parn	83	75.933	ENSPPRG00000018583	PARN	83	75.933	Panthera_pardus
ENSACIG00000000619	parn	83	75.933	ENSPTIG00000012135	PARN	83	75.933	Panthera_tigris_altaica
ENSACIG00000000619	parn	83	76.306	ENSPTRG00000007792	PARN	92	78.333	Pan_troglodytes
ENSACIG00000000619	parn	83	74.532	ENSPANG00000020099	PARN	83	74.579	Papio_anubis
ENSACIG00000000619	parn	99	70.938	ENSPKIG00000022807	parn	87	74.910	Paramormyrops_kingsleyae
ENSACIG00000000619	parn	87	73.684	ENSPSIG00000014804	PARN	88	73.684	Pelodiscus_sinensis
ENSACIG00000000619	parn	99	74.531	ENSPMGG00000014431	parn	77	85.316	Periophthalmus_magnuspinnatus
ENSACIG00000000619	parn	83	72.150	ENSPEMG00000018439	Parn	84	72.150	Peromyscus_maniculatus_bairdii
ENSACIG00000000619	parn	80	67.052	ENSPMAG00000003956	parn	98	67.052	Petromyzon_marinus
ENSACIG00000000619	parn	84	71.642	ENSPCIG00000001259	PARN	92	78.333	Phascolarctos_cinereus
ENSACIG00000000619	parn	100	79.095	ENSPFOG00000012823	parn	87	79.095	Poecilia_formosa
ENSACIG00000000619	parn	100	79.251	ENSPLAG00000006395	parn	87	79.251	Poecilia_latipinna
ENSACIG00000000619	parn	100	79.095	ENSPMEG00000007711	parn	87	79.095	Poecilia_mexicana
ENSACIG00000000619	parn	100	79.251	ENSPREG00000000147	parn	87	79.251	Poecilia_reticulata
ENSACIG00000000619	parn	83	75.836	ENSPPYG00000007123	PARN	83	75.836	Pongo_abelii
ENSACIG00000000619	parn	78	66.203	ENSPCAG00000001741	PARN	82	66.203	Procavia_capensis
ENSACIG00000000619	parn	85	72.161	ENSPCOG00000019292	PARN	92	76.667	Propithecus_coquereli
ENSACIG00000000619	parn	82	72.401	ENSPVAG00000002547	PARN	83	72.401	Pteropus_vampyrus
ENSACIG00000000619	parn	99	85.290	ENSPNYG00000006835	parn	94	87.835	Pundamilia_nyererei
ENSACIG00000000619	parn	92	70.539	ENSPNAG00000018905	parn	80	78.571	Pygocentrus_nattereri
ENSACIG00000000619	parn	86	71.327	ENSRNOG00000002912	Parn	86	71.327	Rattus_norvegicus
ENSACIG00000000619	parn	86	71.014	ENSRROG00000020116	-	97	71.014	Rhinopithecus_roxellana
ENSACIG00000000619	parn	83	74.813	ENSSBOG00000034726	PARN	77	82.508	Saimiri_boliviensis_boliviensis
ENSACIG00000000619	parn	76	72.131	ENSSHAG00000008493	PARN	93	76.077	Sarcophilus_harrisii
ENSACIG00000000619	parn	100	70.698	ENSSFOG00015014165	parn	98	68.944	Scleropages_formosus
ENSACIG00000000619	parn	99	80.438	ENSSMAG00000000685	parn	91	82.143	Scophthalmus_maximus
ENSACIG00000000619	parn	99	83.463	ENSSDUG00000014555	parn	87	83.619	Seriola_dumerili
ENSACIG00000000619	parn	76	95.082	ENSSLDG00000007603	-	100	76.303	Seriola_lalandi_dorsalis
ENSACIG00000000619	parn	67	77.011	ENSSARG00000014339	PARN	75	77.011	Sorex_araneus
ENSACIG00000000619	parn	87	73.843	ENSSPUG00000007719	PARN	87	73.843	Sphenodon_punctatus
ENSACIG00000000619	parn	99	84.507	ENSSPAG00000007095	parn	98	80.231	Stegastes_partitus
ENSACIG00000000619	parn	96	68.130	ENSSSCG00000007878	PARN	74	75.933	Sus_scrofa
ENSACIG00000000619	parn	86	73.381	ENSTGUG00000004971	PARN	86	73.921	Taeniopygia_guttata
ENSACIG00000000619	parn	86	80.000	ENSTRUG00000015208	-	100	93.939	Takifugu_rubripes
ENSACIG00000000619	parn	95	80.130	ENSTNIG00000008252	parn	87	85.091	Tetraodon_nigroviridis
ENSACIG00000000619	parn	74	66.105	ENSTBEG00000010407	PARN	81	66.173	Tupaia_belangeri
ENSACIG00000000619	parn	75	76.543	ENSTTRG00000002843	PARN	77	76.543	Tursiops_truncatus
ENSACIG00000000619	parn	67	68.506	ENSUAMG00000008283	PARN	94	66.118	Ursus_americanus
ENSACIG00000000619	parn	83	75.933	ENSUMAG00000004527	PARN	83	75.933	Ursus_maritimus
ENSACIG00000000619	parn	82	72.779	ENSVPAG00000008968	PARN	85	72.779	Vicugna_pacos
ENSACIG00000000619	parn	83	75.746	ENSVVUG00000019509	PARN	83	75.746	Vulpes_vulpes
ENSACIG00000000619	parn	84	76.119	ENSXETG00000010994	parn	100	74.528	Xenopus_tropicalis
ENSACIG00000000619	parn	100	74.571	ENSXCOG00000015990	parn	100	74.571	Xiphophorus_couchianus
ENSACIG00000000619	parn	100	78.627	ENSXMAG00000014783	parn	87	78.627	Xiphophorus_maculatus