EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000001057 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 22010 bases
Position: chrCCOE01001244.1:1027616-1049625
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000001615	XRN_N	PF03159.18	1.3e-94	1	1
ENSACIP00000001620	XRN_N	PF03159.18	2.3e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000001684	-	4968	-	ENSACIP00000001615	1655 (aa)	-	-
ENSACIT00000001689	-	4869	-	ENSACIP00000001620	1622 (aa)	-	-

Gene Model

Click here to download ENSACIG00000001057's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000001057's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000001057	xrn1	99	72.254	ENSG00000114127	XRN1	97	94.231	Homo_sapiens
ENSACIG00000001057	xrn1	99	86.740	ENSAPOG00000000622	xrn1	100	86.924	Acanthochromis_polyacanthus
ENSACIG00000001057	xrn1	93	72.182	ENSAMEG00000012538	XRN1	93	72.227	Ailuropoda_melanoleuca
ENSACIG00000001057	xrn1	99	90.222	ENSAOCG00000014097	xrn1	100	84.752	Amphiprion_ocellaris
ENSACIG00000001057	xrn1	99	90.574	ENSAPEG00000006620	xrn1	95	90.902	Amphiprion_percula
ENSACIG00000001057	xrn1	99	80.762	ENSATEG00000009752	xrn1	99	85.781	Anabas_testudineus
ENSACIG00000001057	xrn1	96	72.810	ENSAPLG00000004905	XRN1	93	72.750	Anas_platyrhynchos
ENSACIG00000001057	xrn1	98	72.019	ENSACAG00000004985	XRN1	94	70.109	Anolis_carolinensis
ENSACIG00000001057	xrn1	99	72.683	ENSANAG00000029013	XRN1	99	73.550	Aotus_nancymaae
ENSACIG00000001057	xrn1	99	93.694	ENSACLG00000004806	xrn1	95	93.694	Astatotilapia_calliptera
ENSACIG00000001057	xrn1	98	75.899	ENSAMXG00000019370	xrn1	95	96.117	Astyanax_mexicanus
ENSACIG00000001057	xrn1	98	72.439	ENSBTAG00000011524	XRN1	95	72.484	Bos_taurus
ENSACIG00000001057	xrn1	73	38.456	WBGene00012730	xrn-1	79	60.149	Caenorhabditis_elegans
ENSACIG00000001057	xrn1	99	72.461	ENSCJAG00000001872	XRN1	95	72.299	Callithrix_jacchus
ENSACIG00000001057	xrn1	93	73.089	ENSCAFG00000007783	XRN1	95	72.883	Canis_familiaris
ENSACIG00000001057	xrn1	93	73.089	ENSCAFG00020009120	XRN1	99	76.415	Canis_lupus_dingo
ENSACIG00000001057	xrn1	98	72.321	ENSCHIG00000019192	XRN1	92	72.403	Capra_hircus
ENSACIG00000001057	xrn1	99	72.661	ENSTSYG00000002705	XRN1	95	72.498	Carlito_syrichta
ENSACIG00000001057	xrn1	58	62.541	ENSCAPG00000004604	-	99	62.541	Cavia_aperea
ENSACIG00000001057	xrn1	99	72.520	ENSCCAG00000034800	XRN1	99	77.971	Cebus_capucinus
ENSACIG00000001057	xrn1	94	72.638	ENSCATG00000041794	XRN1	95	72.476	Cercocebus_atys
ENSACIG00000001057	xrn1	98	72.683	ENSCLAG00000001451	XRN1	99	78.447	Chinchilla_lanigera
ENSACIG00000001057	xrn1	94	72.661	ENSCSAG00000011265	XRN1	95	72.498	Chlorocebus_sabaeus
ENSACIG00000001057	xrn1	56	92.208	ENSCHOG00000013961	-	52	92.208	Choloepus_hoffmanni
ENSACIG00000001057	xrn1	73	50.349	ENSCSAVG00000008584	-	93	50.349	Ciona_savignyi
ENSACIG00000001057	xrn1	94	72.742	ENSCANG00000037495	XRN1	99	77.971	Colobus_angolensis_palliatus
ENSACIG00000001057	xrn1	93	72.276	ENSCGRG00001019411	Xrn1	99	78.130	Cricetulus_griseus_chok1gshd
ENSACIG00000001057	xrn1	93	72.276	ENSCGRG00000012464	Xrn1	99	78.130	Cricetulus_griseus_crigri
ENSACIG00000001057	xrn1	98	80.260	ENSCSEG00000021285	xrn1	93	98.058	Cynoglossus_semilaevis
ENSACIG00000001057	xrn1	70	86.360	ENSCVAG00000013089	xrn1	99	86.360	Cyprinodon_variegatus
ENSACIG00000001057	xrn1	98	80.360	ENSDARG00000091652	xrn1	98	83.579	Danio_rerio
ENSACIG00000001057	xrn1	98	72.254	ENSDORG00000013833	Xrn1	94	72.254	Dipodomys_ordii
ENSACIG00000001057	xrn1	73	40.579	FBgn0020261	pcm	71	40.579	Drosophila_melanogaster
ENSACIG00000001057	xrn1	85	70.270	ENSETEG00000003978	XRN1	88	70.248	Echinops_telfairi
ENSACIG00000001057	xrn1	93	73.068	ENSEASG00005002687	XRN1	99	78.639	Equus_asinus_asinus
ENSACIG00000001057	xrn1	93	72.986	ENSECAG00000008301	XRN1	95	72.868	Equus_caballus
ENSACIG00000001057	xrn1	90	65.336	ENSEEUG00000011323	XRN1	87	65.336	Erinaceus_europaeus
ENSACIG00000001057	xrn1	99	75.635	ENSELUG00000000169	xrn1	94	80.389	Esox_lucius
ENSACIG00000001057	xrn1	96	67.831	ENSFCAG00000027589	XRN1	99	80.000	Felis_catus
ENSACIG00000001057	xrn1	98	72.654	ENSFALG00000007021	XRN1	97	70.830	Ficedula_albicollis
ENSACIG00000001057	xrn1	98	71.928	ENSFDAG00000020494	XRN1	99	78.288	Fukomys_damarensis
ENSACIG00000001057	xrn1	93	74.013	ENSGMOG00000006396	xrn1	84	74.753	Gadus_morhua
ENSACIG00000001057	xrn1	98	73.279	ENSGALG00000002706	XRN1	94	71.451	Gallus_gallus
ENSACIG00000001057	xrn1	99	88.033	ENSGACG00000014328	xrn1	94	88.033	Gasterosteus_aculeatus
ENSACIG00000001057	xrn1	93	70.465	ENSGAGG00000017535	XRN1	93	70.209	Gopherus_agassizii
ENSACIG00000001057	xrn1	99	72.335	ENSGGOG00000008047	XRN1	95	72.172	Gorilla_gorilla
ENSACIG00000001057	xrn1	100	89.246	ENSHBUG00000005908	xrn1	100	87.993	Haplochromis_burtoni
ENSACIG00000001057	xrn1	99	69.555	ENSHGLG00000014476	XRN1	99	78.288	Heterocephalus_glaber_female
ENSACIG00000001057	xrn1	99	69.555	ENSHGLG00100015130	XRN1	99	78.288	Heterocephalus_glaber_male
ENSACIG00000001057	xrn1	96	84.258	ENSHCOG00000014062	xrn1	99	84.258	Hippocampus_comes
ENSACIG00000001057	xrn1	98	78.741	ENSIPUG00000015229	xrn1	95	78.676	Ictalurus_punctatus
ENSACIG00000001057	xrn1	98	72.801	ENSSTOG00000013552	XRN1	99	77.655	Ictidomys_tridecemlineatus
ENSACIG00000001057	xrn1	97	72.282	ENSJJAG00000010863	Xrn1	99	77.558	Jaculus_jaculus
ENSACIG00000001057	xrn1	99	79.114	ENSKMAG00000021356	xrn1	95	84.824	Kryptolebias_marmoratus
ENSACIG00000001057	xrn1	98	86.628	ENSLBEG00000018656	xrn1	98	97.115	Labrus_bergylta
ENSACIG00000001057	xrn1	98	71.961	ENSLACG00000009020	XRN1	93	71.961	Latimeria_chalumnae
ENSACIG00000001057	xrn1	99	76.705	ENSLOCG00000007944	xrn1	99	74.712	Lepisosteus_oculatus
ENSACIG00000001057	xrn1	65	73.585	ENSLAFG00000015426	XRN1	99	73.458	Loxodonta_africana
ENSACIG00000001057	xrn1	94	72.661	ENSMFAG00000032599	XRN1	95	72.498	Macaca_fascicularis
ENSACIG00000001057	xrn1	94	72.661	ENSMMUG00000014038	XRN1	95	72.498	Macaca_mulatta
ENSACIG00000001057	xrn1	94	72.579	ENSMNEG00000034217	XRN1	95	72.417	Macaca_nemestrina
ENSACIG00000001057	xrn1	99	80.833	ENSMAMG00000013219	xrn1	92	89.218	Mastacembelus_armatus
ENSACIG00000001057	xrn1	99	93.694	ENSMZEG00005015099	xrn1	95	93.694	Maylandia_zebra
ENSACIG00000001057	xrn1	97	71.370	ENSMGAG00000006333	XRN1	93	71.228	Meleagris_gallopavo
ENSACIG00000001057	xrn1	99	72.846	ENSMICG00000048948	XRN1	97	94.231	Microcebus_murinus
ENSACIG00000001057	xrn1	60	78.288	ENSMOCG00000008665	Xrn1	99	78.130	Microtus_ochrogaster
ENSACIG00000001057	xrn1	97	73.394	ENSMODG00000021236	XRN1	95	71.855	Monodelphis_domestica
ENSACIG00000001057	xrn1	99	78.682	ENSMALG00000004098	xrn1	100	79.038	Monopterus_albus
ENSACIG00000001057	xrn1	96	78.503	MGP_CAROLIEiJ_G0032535	Xrn1	100	87.805	Mus_caroli
ENSACIG00000001057	xrn1	98	72.186	ENSMUSG00000032410	Xrn1	100	87.805	Mus_musculus
ENSACIG00000001057	xrn1	98	72.023	MGP_PahariEiJ_G0015404	Xrn1	100	87.805	Mus_pahari
ENSACIG00000001057	xrn1	98	72.104	MGP_SPRETEiJ_G0033678	Xrn1	100	87.805	Mus_spretus
ENSACIG00000001057	xrn1	97	62.840	ENSMPUG00000012040	XRN1	95	72.927	Mustela_putorius_furo
ENSACIG00000001057	xrn1	98	72.182	ENSMLUG00000016885	XRN1	93	72.159	Myotis_lucifugus
ENSACIG00000001057	xrn1	60	73.028	ENSNGAG00000023964	Xrn1	99	74.010	Nannospalax_galili
ENSACIG00000001057	xrn1	94	72.417	ENSNLEG00000004726	XRN1	95	72.254	Nomascus_leucogenys
ENSACIG00000001057	xrn1	68	94.845	ENSMEUG00000014473	-	66	95.146	Notamacropus_eugenii
ENSACIG00000001057	xrn1	74	66.720	ENSOPRG00000007337	-	72	67.675	Ochotona_princeps
ENSACIG00000001057	xrn1	99	94.290	ENSONIG00000016673	xrn1	99	90.571	Oreochromis_niloticus
ENSACIG00000001057	xrn1	90	70.374	ENSOANG00000006735	XRN1	94	70.283	Ornithorhynchus_anatinus
ENSACIG00000001057	xrn1	98	72.927	ENSOCUG00000001861	XRN1	93	73.008	Oryctolagus_cuniculus
ENSACIG00000001057	xrn1	98	87.131	ENSORLG00000013005	xrn1	93	87.131	Oryzias_latipes
ENSACIG00000001057	xrn1	98	86.967	ENSORLG00020005559	xrn1	94	86.967	Oryzias_latipes_hni
ENSACIG00000001057	xrn1	98	86.803	ENSORLG00015022523	xrn1	100	79.882	Oryzias_latipes_hsok
ENSACIG00000001057	xrn1	98	88.115	ENSOMEG00000015397	xrn1	99	87.469	Oryzias_melastigma
ENSACIG00000001057	xrn1	98	70.488	ENSOGAG00000000170	XRN1	95	70.455	Otolemur_garnettii
ENSACIG00000001057	xrn1	98	72.344	ENSOARG00000006343	XRN1	95	72.425	Ovis_aries
ENSACIG00000001057	xrn1	99	72.498	ENSPPAG00000010180	XRN1	95	72.335	Pan_paniscus
ENSACIG00000001057	xrn1	96	72.830	ENSPPRG00000007125	XRN1	95	72.912	Panthera_pardus
ENSACIG00000001057	xrn1	96	72.868	ENSPTIG00000021081	XRN1	95	72.912	Panthera_tigris_altaica
ENSACIG00000001057	xrn1	99	72.498	ENSPTRG00000015482	XRN1	95	72.335	Pan_troglodytes
ENSACIG00000001057	xrn1	99	72.661	ENSPANG00000010638	XRN1	95	72.498	Papio_anubis
ENSACIG00000001057	xrn1	99	72.132	ENSPSIG00000018050	XRN1	93	72.132	Pelodiscus_sinensis
ENSACIG00000001057	xrn1	60	87.122	ENSPMGG00000002648	xrn1	99	86.446	Periophthalmus_magnuspinnatus
ENSACIG00000001057	xrn1	60	78.605	ENSPEMG00000020610	Xrn1	99	78.288	Peromyscus_maniculatus_bairdii
ENSACIG00000001057	xrn1	68	51.092	ENSPMAG00000002975	xrn1	99	48.992	Petromyzon_marinus
ENSACIG00000001057	xrn1	97	72.982	ENSPCIG00000028735	XRN1	99	78.254	Phascolarctos_cinereus
ENSACIG00000001057	xrn1	89	88.000	ENSPFOG00000013932	xrn1	99	82.944	Poecilia_formosa
ENSACIG00000001057	xrn1	89	88.770	ENSPLAG00000021653	xrn1	99	83.149	Poecilia_latipinna
ENSACIG00000001057	xrn1	87	85.191	ENSPMEG00000003076	xrn1	95	83.178	Poecilia_mexicana
ENSACIG00000001057	xrn1	99	84.735	ENSPREG00000021147	xrn1	100	80.397	Poecilia_reticulata
ENSACIG00000001057	xrn1	99	72.661	ENSPPYG00000014172	XRN1	95	72.498	Pongo_abelii
ENSACIG00000001057	xrn1	84	67.498	ENSPCAG00000005638	XRN1	90	67.167	Procavia_capensis
ENSACIG00000001057	xrn1	99	72.439	ENSPCOG00000013089	XRN1	99	77.655	Propithecus_coquereli
ENSACIG00000001057	xrn1	89	70.060	ENSPVAG00000016265	XRN1	91	70.060	Pteropus_vampyrus
ENSACIG00000001057	xrn1	100	90.118	ENSPNYG00000010570	xrn1	96	92.822	Pundamilia_nyererei
ENSACIG00000001057	xrn1	98	75.775	ENSPNAG00000023531	xrn1	95	76.101	Pygocentrus_nattereri
ENSACIG00000001057	xrn1	98	72.172	ENSRNOG00000042951	Xrn1	93	72.033	Rattus_norvegicus
ENSACIG00000001057	xrn1	94	72.579	ENSRBIG00000041227	XRN1	95	72.417	Rhinopithecus_bieti
ENSACIG00000001057	xrn1	74	32.798	YGL173C	XRN1	73	52.033	Saccharomyces_cerevisiae
ENSACIG00000001057	xrn1	99	72.683	ENSSBOG00000029561	XRN1	95	72.439	Saimiri_boliviensis_boliviensis
ENSACIG00000001057	xrn1	96	71.844	ENSSHAG00000016207	XRN1	94	71.678	Sarcophilus_harrisii
ENSACIG00000001057	xrn1	97	77.887	ENSSFOG00015024211	xrn1	95	77.887	Scleropages_formosus
ENSACIG00000001057	xrn1	98	87.643	ENSSMAG00000016534	xrn1	94	87.643	Scophthalmus_maximus
ENSACIG00000001057	xrn1	91	90.640	ENSSDUG00000010306	xrn1	97	90.640	Seriola_dumerili
ENSACIG00000001057	xrn1	99	88.627	ENSSLDG00000021543	xrn1	100	87.299	Seriola_lalandi_dorsalis
ENSACIG00000001057	xrn1	64	67.795	ENSSARG00000007741	-	75	67.593	Sorex_araneus
ENSACIG00000001057	xrn1	99	72.352	ENSTGUG00000008498	XRN1	95	72.191	Taeniopygia_guttata
ENSACIG00000001057	xrn1	99	73.545	ENSTRUG00000004895	xrn1	97	85.745	Takifugu_rubripes
ENSACIG00000001057	xrn1	98	81.714	ENSTNIG00000017615	xrn1	93	82.555	Tetraodon_nigroviridis
ENSACIG00000001057	xrn1	78	84.450	ENSTBEG00000003256	XRN1	78	82.609	Tupaia_belangeri
ENSACIG00000001057	xrn1	98	69.919	ENSTTRG00000012914	XRN1	95	69.968	Tursiops_truncatus
ENSACIG00000001057	xrn1	93	70.732	ENSUAMG00000001608	XRN1	99	74.882	Ursus_americanus
ENSACIG00000001057	xrn1	93	72.602	ENSUMAG00000013625	XRN1	95	72.646	Ursus_maritimus
ENSACIG00000001057	xrn1	99	58.951	ENSVPAG00000004690	XRN1	95	69.593	Vicugna_pacos
ENSACIG00000001057	xrn1	92	73.008	ENSVVUG00000024461	XRN1	99	78.673	Vulpes_vulpes
ENSACIG00000001057	xrn1	98	72.059	ENSXETG00000000619	xrn1	99	84.555	Xenopus_tropicalis
ENSACIG00000001057	xrn1	99	79.522	ENSXCOG00000007917	xrn1	100	79.821	Xiphophorus_couchianus
ENSACIG00000001057	xrn1	93	86.323	ENSXMAG00000018320	xrn1	98	86.405	Xiphophorus_maculatus