EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000001353 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 25453 bases
Position: chrCCOE01000365.1:123302-148754
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000001709	EST1	PF10374.9	3.4e-24	1	1
ENSACIP00000001709	EST1_DNA_bind	PF10373.9	9.9e-41	1	1
ENSACIP00000001709	PIN_4	PF13638.6	9.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000001781	-	3090	-	ENSACIP00000001709	1029 (aa)	-	-

Gene Model

Click here to download ENSACIG00000001353's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000001353's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000001353	smg5	99	66.667	ENSG00000198952	SMG5	99	65.038	Homo_sapiens
ENSACIG00000001353	smg5	99	87.961	ENSAPOG00000019690	smg5	99	87.670	Acanthochromis_polyacanthus
ENSACIG00000001353	smg5	98	64.643	ENSAMEG00000014458	SMG5	100	63.158	Ailuropoda_melanoleuca
ENSACIG00000001353	smg5	95	89.479	ENSAOCG00000019483	smg5	100	85.663	Amphiprion_ocellaris
ENSACIG00000001353	smg5	98	89.662	ENSAPEG00000022949	smg5	98	89.066	Amphiprion_percula
ENSACIG00000001353	smg5	100	88.995	ENSATEG00000005348	smg5	100	88.804	Anabas_testudineus
ENSACIG00000001353	smg5	98	65.444	ENSAPLG00000010263	SMG5	100	65.024	Anas_platyrhynchos
ENSACIG00000001353	smg5	99	65.544	ENSANAG00000032899	SMG5	99	65.029	Aotus_nancymaae
ENSACIG00000001353	smg5	100	92.636	ENSACLG00000009311	smg5	100	92.733	Astatotilapia_calliptera
ENSACIG00000001353	smg5	99	77.306	ENSAMXG00000024616	smg5	100	77.879	Astyanax_mexicanus
ENSACIG00000001353	smg5	99	66.475	ENSBTAG00000009435	SMG5	99	64.751	Bos_taurus
ENSACIG00000001353	smg5	99	40.598	ENSBTAG00000021747	-	99	39.961	Bos_taurus
ENSACIG00000001353	smg5	99	65.544	ENSCJAG00000005684	SMG5	99	65.125	Callithrix_jacchus
ENSACIG00000001353	smg5	99	65.377	ENSCAFG00000016839	SMG5	99	64.603	Canis_familiaris
ENSACIG00000001353	smg5	99	65.377	ENSCAFG00020006061	SMG5	99	64.603	Canis_lupus_dingo
ENSACIG00000001353	smg5	99	39.922	ENSCHIG00000006323	-	99	39.571	Capra_hircus
ENSACIG00000001353	smg5	99	67.051	ENSCHIG00000007709	SMG5	99	65.134	Capra_hircus
ENSACIG00000001353	smg5	99	66.059	ENSTSYG00000004099	SMG5	99	64.442	Carlito_syrichta
ENSACIG00000001353	smg5	94	50.660	ENSCAPG00000003631	SMG5	100	50.454	Cavia_aperea
ENSACIG00000001353	smg5	99	65.962	ENSCPOG00000015696	SMG5	99	65.105	Cavia_porcellus
ENSACIG00000001353	smg5	99	65.607	ENSCCAG00000027409	SMG5	99	65.029	Cebus_capucinus
ENSACIG00000001353	smg5	99	66.763	ENSCATG00000030539	SMG5	99	65.038	Cercocebus_atys
ENSACIG00000001353	smg5	99	65.772	ENSCLAG00000003983	SMG5	99	65.010	Chinchilla_lanigera
ENSACIG00000001353	smg5	99	66.763	ENSCSAG00000002120	SMG5	99	65.038	Chlorocebus_sabaeus
ENSACIG00000001353	smg5	53	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSACIG00000001353	smg5	94	65.663	ENSCPBG00000025848	SMG5	100	65.361	Chrysemys_picta_bellii
ENSACIG00000001353	smg5	93	33.098	ENSCING00000008706	-	98	32.560	Ciona_intestinalis
ENSACIG00000001353	smg5	99	63.985	ENSCANG00000029208	SMG5	99	62.250	Colobus_angolensis_palliatus
ENSACIG00000001353	smg5	99	65.580	ENSCGRG00001006336	Smg5	99	64.961	Cricetulus_griseus_chok1gshd
ENSACIG00000001353	smg5	98	65.463	ENSCGRG00000005111	Smg5	100	64.798	Cricetulus_griseus_crigri
ENSACIG00000001353	smg5	100	85.274	ENSCSEG00000014220	smg5	100	84.889	Cynoglossus_semilaevis
ENSACIG00000001353	smg5	99	79.883	ENSCVAG00000000529	smg5	99	80.078	Cyprinodon_variegatus
ENSACIG00000001353	smg5	99	74.955	ENSDARG00000041481	smg5	100	75.335	Danio_rerio
ENSACIG00000001353	smg5	92	33.299	ENSDNOG00000039862	-	85	39.071	Dasypus_novemcinctus
ENSACIG00000001353	smg5	99	63.628	ENSDNOG00000000051	SMG5	99	61.909	Dasypus_novemcinctus
ENSACIG00000001353	smg5	99	66.027	ENSDORG00000010382	Smg5	99	64.689	Dipodomys_ordii
ENSACIG00000001353	smg5	74	84.466	ENSETEG00000010336	SMG5	82	84.466	Echinops_telfairi
ENSACIG00000001353	smg5	91	45.786	ENSEBUG00000003739	smg5	99	45.511	Eptatretus_burgeri
ENSACIG00000001353	smg5	99	66.089	ENSEASG00005019122	SMG5	99	65.355	Equus_asinus_asinus
ENSACIG00000001353	smg5	99	65.992	ENSECAG00000001389	SMG5	99	65.355	Equus_caballus
ENSACIG00000001353	smg5	72	79.037	ENSEEUG00000012690	SMG5	75	78.187	Erinaceus_europaeus
ENSACIG00000001353	smg5	99	81.625	ENSELUG00000012585	smg5	99	81.783	Esox_lucius
ENSACIG00000001353	smg5	99	65.861	ENSFCAG00000011783	SMG5	99	64.569	Felis_catus
ENSACIG00000001353	smg5	57	68.781	ENSFALG00000001166	-	95	67.559	Ficedula_albicollis
ENSACIG00000001353	smg5	98	65.815	ENSFDAG00000017388	SMG5	100	64.418	Fukomys_damarensis
ENSACIG00000001353	smg5	94	79.552	ENSFHEG00000013939	smg5	98	78.433	Fundulus_heteroclitus
ENSACIG00000001353	smg5	99	76.064	ENSGMOG00000007310	smg5	100	77.285	Gadus_morhua
ENSACIG00000001353	smg5	99	65.744	ENSGALG00000029918	-	99	65.213	Gallus_gallus
ENSACIG00000001353	smg5	99	76.727	ENSGAFG00000021691	smg5	100	77.545	Gambusia_affinis
ENSACIG00000001353	smg5	99	80.410	ENSGACG00000013142	smg5	100	81.441	Gasterosteus_aculeatus
ENSACIG00000001353	smg5	99	66.446	ENSGAGG00000016131	SMG5	99	65.733	Gopherus_agassizii
ENSACIG00000001353	smg5	99	66.315	ENSGGOG00000010932	SMG5	99	64.751	Gorilla_gorilla
ENSACIG00000001353	smg5	100	92.560	ENSHBUG00000008654	smg5	100	91.954	Haplochromis_burtoni
ENSACIG00000001353	smg5	99	65.994	ENSHGLG00000019152	SMG5	99	64.532	Heterocephalus_glaber_female
ENSACIG00000001353	smg5	90	66.844	ENSHGLG00100015948	SMG5	99	65.217	Heterocephalus_glaber_male
ENSACIG00000001353	smg5	87	83.575	ENSHCOG00000010229	smg5	93	83.575	Hippocampus_comes
ENSACIG00000001353	smg5	99	75.518	ENSIPUG00000006624	Smg5	100	76.833	Ictalurus_punctatus
ENSACIG00000001353	smg5	99	66.475	ENSSTOG00000001780	SMG5	99	65.038	Ictidomys_tridecemlineatus
ENSACIG00000001353	smg5	99	65.709	ENSJJAG00000022763	Smg5	99	64.947	Jaculus_jaculus
ENSACIG00000001353	smg5	99	83.363	ENSKMAG00000014586	smg5	100	82.829	Kryptolebias_marmoratus
ENSACIG00000001353	smg5	99	87.078	ENSLBEG00000002145	smg5	99	87.271	Labrus_bergylta
ENSACIG00000001353	smg5	99	59.716	ENSLACG00000010521	SMG5	99	59.621	Latimeria_chalumnae
ENSACIG00000001353	smg5	99	64.808	ENSLAFG00000006241	SMG5	99	64.519	Loxodonta_africana
ENSACIG00000001353	smg5	99	66.763	ENSMFAG00000045357	SMG5	99	65.038	Macaca_fascicularis
ENSACIG00000001353	smg5	99	67.444	ENSMMUG00000000090	SMG5	99	65.795	Macaca_mulatta
ENSACIG00000001353	smg5	99	66.667	ENSMNEG00000044425	SMG5	99	64.943	Macaca_nemestrina
ENSACIG00000001353	smg5	99	61.435	ENSMLEG00000041192	SMG5	99	60.019	Mandrillus_leucophaeus
ENSACIG00000001353	smg5	99	82.562	ENSMAMG00000010683	smg5	100	83.452	Mastacembelus_armatus
ENSACIG00000001353	smg5	62	87.635	ENSMZEG00005016543	smg5	100	88.563	Maylandia_zebra
ENSACIG00000001353	smg5	100	88.781	ENSMZEG00005015815	smg5	100	88.878	Maylandia_zebra
ENSACIG00000001353	smg5	56	39.898	ENSMAUG00000000043	-	68	50.643	Mesocricetus_auratus
ENSACIG00000001353	smg5	99	65.484	ENSMAUG00000010381	Smg5	99	64.334	Mesocricetus_auratus
ENSACIG00000001353	smg5	99	65.637	ENSMICG00000002257	SMG5	99	64.938	Microcebus_murinus
ENSACIG00000001353	smg5	99	65.709	ENSMOCG00000016590	Smg5	99	64.368	Microtus_ochrogaster
ENSACIG00000001353	smg5	99	81.042	ENSMMOG00000017199	smg5	100	81.312	Mola_mola
ENSACIG00000001353	smg5	76	35.751	ENSMODG00000004511	-	77	35.751	Monodelphis_domestica
ENSACIG00000001353	smg5	77	35.149	ENSMODG00000004532	-	85	35.149	Monodelphis_domestica
ENSACIG00000001353	smg5	87	66.375	ENSMODG00000016901	SMG5	98	64.995	Monodelphis_domestica
ENSACIG00000001353	smg5	75	34.447	ENSMODG00000010675	-	86	34.447	Monodelphis_domestica
ENSACIG00000001353	smg5	78	34.359	ENSMODG00000004735	-	90	34.190	Monodelphis_domestica
ENSACIG00000001353	smg5	99	81.389	ENSMALG00000010375	smg5	100	81.923	Monopterus_albus
ENSACIG00000001353	smg5	99	65.577	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSACIG00000001353	smg5	99	65.865	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSACIG00000001353	smg5	99	65.835	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSACIG00000001353	smg5	99	65.769	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSACIG00000001353	smg5	94	65.057	ENSMPUG00000004546	SMG5	100	63.571	Mustela_putorius_furo
ENSACIG00000001353	smg5	99	66.378	ENSMLUG00000008518	SMG5	99	65.288	Myotis_lucifugus
ENSACIG00000001353	smg5	99	65.833	ENSNGAG00000020706	Smg5	99	64.779	Nannospalax_galili
ENSACIG00000001353	smg5	97	86.414	ENSNBRG00000004332	smg5	98	86.214	Neolamprologus_brichardi
ENSACIG00000001353	smg5	99	66.763	ENSNLEG00000012439	SMG5	99	65.038	Nomascus_leucogenys
ENSACIG00000001353	smg5	99	65.138	ENSMEUG00000012834	SMG5	99	64.054	Notamacropus_eugenii
ENSACIG00000001353	smg5	99	66.379	ENSOPRG00000009152	SMG5	99	64.943	Ochotona_princeps
ENSACIG00000001353	smg5	99	66.282	ENSODEG00000012237	SMG5	99	65.355	Octodon_degus
ENSACIG00000001353	smg5	99	86.234	ENSONIG00000008632	smg5	100	86.234	Oreochromis_niloticus
ENSACIG00000001353	smg5	90	37.247	ENSOCUG00000023338	-	99	36.026	Oryctolagus_cuniculus
ENSACIG00000001353	smg5	98	66.503	ENSOCUG00000012886	SMG5	100	64.844	Oryctolagus_cuniculus
ENSACIG00000001353	smg5	99	80.270	ENSORLG00000016239	smg5	100	81.171	Oryzias_latipes
ENSACIG00000001353	smg5	99	80.884	ENSORLG00020013127	smg5	100	81.368	Oryzias_latipes_hni
ENSACIG00000001353	smg5	99	81.298	ENSORLG00015019014	smg5	100	81.818	Oryzias_latipes_hsok
ENSACIG00000001353	smg5	82	78.710	ENSOMEG00000021330	smg5	92	79.936	Oryzias_melastigma
ENSACIG00000001353	smg5	99	65.511	ENSOGAG00000004966	SMG5	99	64.541	Otolemur_garnettii
ENSACIG00000001353	smg5	99	40.691	ENSOARG00000011963	-	99	40.058	Ovis_aries
ENSACIG00000001353	smg5	99	66.955	ENSOARG00000005778	SMG5	99	65.038	Ovis_aries
ENSACIG00000001353	smg5	99	66.571	ENSPPAG00000011996	SMG5	99	64.847	Pan_paniscus
ENSACIG00000001353	smg5	98	65.782	ENSPPRG00000011901	SMG5	100	64.596	Panthera_pardus
ENSACIG00000001353	smg5	97	62.165	ENSPTIG00000007892	SMG5	98	61.056	Panthera_tigris_altaica
ENSACIG00000001353	smg5	99	66.571	ENSPTRG00000023925	SMG5	99	64.847	Pan_troglodytes
ENSACIG00000001353	smg5	99	66.571	ENSPTRG00000049282	-	99	64.847	Pan_troglodytes
ENSACIG00000001353	smg5	99	66.763	ENSPANG00000011201	SMG5	99	65.038	Papio_anubis
ENSACIG00000001353	smg5	100	76.689	ENSPKIG00000009402	smg5	100	76.600	Paramormyrops_kingsleyae
ENSACIG00000001353	smg5	98	66.861	ENSPSIG00000015198	SMG5	100	66.181	Pelodiscus_sinensis
ENSACIG00000001353	smg5	99	72.329	ENSPMGG00000010465	smg5	100	71.807	Periophthalmus_magnuspinnatus
ENSACIG00000001353	smg5	99	65.964	ENSPEMG00000001819	Smg5	99	65.058	Peromyscus_maniculatus_bairdii
ENSACIG00000001353	smg5	58	39.836	ENSPEMG00000010022	-	68	50.372	Peromyscus_maniculatus_bairdii
ENSACIG00000001353	smg5	99	49.378	ENSPMAG00000000410	smg5	99	49.437	Petromyzon_marinus
ENSACIG00000001353	smg5	99	65.962	ENSPCIG00000018938	SMG5	99	64.914	Phascolarctos_cinereus
ENSACIG00000001353	smg5	99	82.159	ENSPFOG00000010191	smg5	100	81.088	Poecilia_formosa
ENSACIG00000001353	smg5	99	82.021	ENSPLAG00000009332	smg5	100	81.843	Poecilia_latipinna
ENSACIG00000001353	smg5	99	89.093	ENSPMEG00000014105	smg5	99	88.900	Poecilia_mexicana
ENSACIG00000001353	smg5	99	82.437	ENSPREG00000017713	smg5	100	82.527	Poecilia_reticulata
ENSACIG00000001353	smg5	99	66.667	ENSPPYG00000000723	SMG5	99	64.943	Pongo_abelii
ENSACIG00000001353	smg5	75	80.000	ENSPCAG00000008412	SMG5	81	80.000	Procavia_capensis
ENSACIG00000001353	smg5	99	66.346	ENSPCOG00000004741	SMG5	99	65.314	Propithecus_coquereli
ENSACIG00000001353	smg5	99	59.249	ENSPVAG00000016748	SMG5	99	58.863	Pteropus_vampyrus
ENSACIG00000001353	smg5	99	85.575	ENSPNYG00000013397	smg5	100	85.310	Pundamilia_nyererei
ENSACIG00000001353	smg5	99	76.757	ENSPNAG00000028363	smg5	100	77.355	Pygocentrus_nattereri
ENSACIG00000001353	smg5	99	65.514	ENSRNOG00000019590	Smg5	99	64.513	Rattus_norvegicus
ENSACIG00000001353	smg5	99	66.859	ENSRBIG00000027428	SMG5	99	64.914	Rhinopithecus_bieti
ENSACIG00000001353	smg5	99	66.763	ENSRROG00000030035	SMG5	99	64.818	Rhinopithecus_roxellana
ENSACIG00000001353	smg5	99	65.703	ENSSBOG00000033339	SMG5	99	65.125	Saimiri_boliviensis_boliviensis
ENSACIG00000001353	smg5	76	41.176	ENSSHAG00000009572	-	79	41.422	Sarcophilus_harrisii
ENSACIG00000001353	smg5	75	36.667	ENSSHAG00000000561	-	85	36.154	Sarcophilus_harrisii
ENSACIG00000001353	smg5	54	36.410	ENSSHAG00000000935	-	79	36.410	Sarcophilus_harrisii
ENSACIG00000001353	smg5	98	65.953	ENSSHAG00000014163	SMG5	100	64.626	Sarcophilus_harrisii
ENSACIG00000001353	smg5	100	79.826	ENSSFOG00015024175	smg5	100	79.364	Scleropages_formosus
ENSACIG00000001353	smg5	99	82.740	ENSSMAG00000013059	smg5	100	82.562	Scophthalmus_maximus
ENSACIG00000001353	smg5	99	83.894	ENSSDUG00000007122	smg5	100	84.248	Seriola_dumerili
ENSACIG00000001353	smg5	99	84.458	ENSSLDG00000011418	smg5	100	84.813	Seriola_lalandi_dorsalis
ENSACIG00000001353	smg5	90	59.318	ENSSARG00000012484	SMG5	99	57.962	Sorex_araneus
ENSACIG00000001353	smg5	94	65.331	ENSSPUG00000002260	SMG5	100	64.329	Sphenodon_punctatus
ENSACIG00000001353	smg5	99	88.218	ENSSPAG00000014266	smg5	98	87.294	Stegastes_partitus
ENSACIG00000001353	smg5	99	66.667	ENSSSCG00000006490	-	100	64.513	Sus_scrofa
ENSACIG00000001353	smg5	99	51.888	ENSSSCG00000039308	-	99	51.062	Sus_scrofa
ENSACIG00000001353	smg5	99	66.892	ENSTGUG00000003748	-	99	66.475	Taeniopygia_guttata
ENSACIG00000001353	smg5	99	79.545	ENSTRUG00000012580	smg5	99	78.883	Takifugu_rubripes
ENSACIG00000001353	smg5	99	81.489	ENSTNIG00000010303	smg5	99	80.861	Tetraodon_nigroviridis
ENSACIG00000001353	smg5	57	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSACIG00000001353	smg5	99	61.850	ENSTTRG00000001401	SMG5	99	60.983	Tursiops_truncatus
ENSACIG00000001353	smg5	99	65.571	ENSUAMG00000013721	SMG5	99	64.100	Ursus_americanus
ENSACIG00000001353	smg5	99	61.176	ENSUMAG00000018041	SMG5	99	59.981	Ursus_maritimus
ENSACIG00000001353	smg5	91	71.287	ENSVPAG00000009446	SMG5	99	57.185	Vicugna_pacos
ENSACIG00000001353	smg5	99	65.541	ENSVVUG00000005887	SMG5	99	64.603	Vulpes_vulpes
ENSACIG00000001353	smg5	77	58.959	ENSXETG00000033791	SMG5	99	56.181	Xenopus_tropicalis
ENSACIG00000001353	smg5	80	94.505	ENSXCOG00000004379	smg5	98	94.505	Xiphophorus_couchianus
ENSACIG00000001353	smg5	99	86.969	ENSXMAG00000013499	smg5	99	86.486	Xiphophorus_maculatus