EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000001863 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 7194 bases
Position: chrCCOE01000953.1:653723-660916
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000002353	RRM_5	PF13893.6	3.5e-06	1	2
ENSACIP00000002353	RRM_5	PF13893.6	3.5e-06	2	2
ENSACIP00000002353	RRM_1	PF00076.22	1.3e-30	1	2
ENSACIP00000002353	RRM_1	PF00076.22	1.3e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000002442	-	963	-	ENSACIP00000002353	320 (aa)	-	-

Gene Model

Click here to download ENSACIG00000001863's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000001863's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000001863	trnau1apb	95	45.130	ENSACIG00000004161	trnau1apa	94	45.130
ENSACIG00000001863	trnau1apb	53	31.707	ENSACIG00000014376	-	72	30.814

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000001863	trnau1apb	100	76.190	ENSAPOG00000010086	trnau1apb	100	76.716	Acanthochromis_polyacanthus
ENSACIG00000001863	trnau1apb	100	84.118	ENSAOCG00000011891	trnau1apb	100	85.294	Amphiprion_ocellaris
ENSACIG00000001863	trnau1apb	100	82.738	ENSAPEG00000008029	trnau1apb	100	86.310	Amphiprion_percula
ENSACIG00000001863	trnau1apb	100	82.991	ENSATEG00000002196	trnau1apb	100	85.000	Anabas_testudineus
ENSACIG00000001863	trnau1apb	100	94.479	ENSACLG00000003016	trnau1apb	100	94.479	Astatotilapia_calliptera
ENSACIG00000001863	trnau1apb	99	65.938	ENSAMXG00000001805	trnau1apb	99	67.500	Astyanax_mexicanus
ENSACIG00000001863	trnau1apb	99	79.412	ENSCSEG00000018215	trnau1apb	100	80.882	Cynoglossus_semilaevis
ENSACIG00000001863	trnau1apb	95	74.618	ENSCVAG00000017866	trnau1apb	100	76.147	Cyprinodon_variegatus
ENSACIG00000001863	trnau1apb	99	65.938	ENSDARG00000056475	trnau1apb	98	67.500	Danio_rerio
ENSACIG00000001863	trnau1apb	100	63.526	ENSELUG00000016683	trnau1apb	99	66.265	Esox_lucius
ENSACIG00000001863	trnau1apb	100	79.420	ENSFHEG00000001267	trnau1apb	100	78.723	Fundulus_heteroclitus
ENSACIG00000001863	trnau1apb	100	73.433	ENSGMOG00000001160	trnau1apb	100	74.328	Gadus_morhua
ENSACIG00000001863	trnau1apb	55	94.350	ENSGAFG00000006770	trnau1apb	100	74.769	Gambusia_affinis
ENSACIG00000001863	trnau1apb	100	79.819	ENSGACG00000014944	trnau1apb	100	80.363	Gasterosteus_aculeatus
ENSACIG00000001863	trnau1apb	69	41.518	ENSGAGG00000022384	-	78	41.964	Gopherus_agassizii
ENSACIG00000001863	trnau1apb	100	88.791	ENSHBUG00000018944	trnau1apb	99	88.791	Haplochromis_burtoni
ENSACIG00000001863	trnau1apb	72	82.096	ENSHCOG00000011350	trnau1apb	75	80.851	Hippocampus_comes
ENSACIG00000001863	trnau1apb	99	62.848	ENSIPUG00000008843	tsp1l	99	66.563	Ictalurus_punctatus
ENSACIG00000001863	trnau1apb	69	90.541	ENSKMAG00000010082	trnau1apb	99	80.645	Kryptolebias_marmoratus
ENSACIG00000001863	trnau1apb	100	80.994	ENSLBEG00000020480	trnau1apb	100	81.579	Labrus_bergylta
ENSACIG00000001863	trnau1apb	100	55.692	ENSLOCG00000013175	trnau1apb	99	56.000	Lepisosteus_oculatus
ENSACIG00000001863	trnau1apb	100	83.186	ENSMAMG00000012192	trnau1apb	100	84.615	Mastacembelus_armatus
ENSACIG00000001863	trnau1apb	100	88.791	ENSMZEG00005014852	trnau1apb	99	88.791	Maylandia_zebra
ENSACIG00000001863	trnau1apb	69	40.969	ENSMGAG00000003234	-	99	41.518	Meleagris_gallopavo
ENSACIG00000001863	trnau1apb	97	73.021	ENSMMOG00000021521	trnau1apb	100	73.021	Mola_mola
ENSACIG00000001863	trnau1apb	100	73.574	ENSMALG00000003772	trnau1apb	100	77.812	Monopterus_albus
ENSACIG00000001863	trnau1apb	97	93.987	ENSNBRG00000000751	trnau1apb	98	93.987	Neolamprologus_brichardi
ENSACIG00000001863	trnau1apb	99	85.489	ENSONIG00000016639	trnau1apb	100	85.489	Oreochromis_niloticus
ENSACIG00000001863	trnau1apb	70	88.839	ENSORLG00000013265	trnau1apb	99	77.493	Oryzias_latipes
ENSACIG00000001863	trnau1apb	100	74.785	ENSORLG00020004464	trnau1apb	99	77.937	Oryzias_latipes_hni
ENSACIG00000001863	trnau1apb	100	74.857	ENSORLG00015021098	trnau1apb	99	78.000	Oryzias_latipes_hsok
ENSACIG00000001863	trnau1apb	70	89.286	ENSOMEG00000016531	trnau1apb	99	80.233	Oryzias_melastigma
ENSACIG00000001863	trnau1apb	57	80.874	ENSPKIG00000007995	trnau1apb	99	61.830	Paramormyrops_kingsleyae
ENSACIG00000001863	trnau1apb	69	44.196	ENSPSIG00000004189	-	78	44.196	Pelodiscus_sinensis
ENSACIG00000001863	trnau1apb	99	66.766	ENSPMGG00000018509	trnau1apb	99	66.467	Periophthalmus_magnuspinnatus
ENSACIG00000001863	trnau1apb	100	81.481	ENSPFOG00000003938	trnau1apb	100	81.481	Poecilia_formosa
ENSACIG00000001863	trnau1apb	100	77.746	ENSPLAG00000015480	trnau1apb	99	78.261	Poecilia_latipinna
ENSACIG00000001863	trnau1apb	100	77.746	ENSPMEG00000012743	trnau1apb	99	78.261	Poecilia_mexicana
ENSACIG00000001863	trnau1apb	100	75.723	ENSPREG00000015035	trnau1apb	99	77.101	Poecilia_reticulata
ENSACIG00000001863	trnau1apb	100	91.718	ENSPNYG00000012127	trnau1apb	100	91.718	Pundamilia_nyererei
ENSACIG00000001863	trnau1apb	99	65.015	ENSPNAG00000019138	trnau1apb	98	66.563	Pygocentrus_nattereri
ENSACIG00000001863	trnau1apb	99	59.159	ENSSFOG00015014158	trnau1apb	99	63.554	Scleropages_formosus
ENSACIG00000001863	trnau1apb	99	78.635	ENSSMAG00000001745	trnau1apb	99	80.655	Scophthalmus_maximus
ENSACIG00000001863	trnau1apb	99	82.059	ENSSDUG00000011109	trnau1apb	99	84.661	Seriola_dumerili
ENSACIG00000001863	trnau1apb	99	82.353	ENSSLDG00000012947	trnau1apb	99	84.956	Seriola_lalandi_dorsalis
ENSACIG00000001863	trnau1apb	69	33.333	ENSSPUG00000016701	-	90	33.453	Sphenodon_punctatus
ENSACIG00000001863	trnau1apb	100	87.963	ENSSPAG00000006917	trnau1apb	100	88.272	Stegastes_partitus
ENSACIG00000001863	trnau1apb	100	77.713	ENSTRUG00000008608	trnau1apb	99	78.592	Takifugu_rubripes
ENSACIG00000001863	trnau1apb	99	74.214	ENSTNIG00000000916	trnau1apb	100	72.642	Tetraodon_nigroviridis
ENSACIG00000001863	trnau1apb	94	70.062	ENSXCOG00000007974	trnau1apb	94	71.207	Xiphophorus_couchianus
ENSACIG00000001863	trnau1apb	100	77.746	ENSXMAG00000029918	trnau1apb	99	78.841	Xiphophorus_maculatus