EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000003060 (Gene tree)
Gene ID: -
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 12025 bases
Position: chrCCOE01000098.1:1042191-1054215
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000003887	TruB_N	PF01509.18	8.4e-37	1	1
ENSACIP00000003893	TruB_N	PF01509.18	9.1e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000004020	-	801	-	ENSACIP00000003893	266 (aa)	-	-
ENSACIT00000004013	-	891	-	ENSACIP00000003887	296 (aa)	-	-

Gene Model

Click here to download ENSACIG00000003060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000003060's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000003060	trub1	82	62.602	ENSG00000165832	TRUB1	70	62.602	Homo_sapiens
ENSACIG00000003060	trub1	88	83.588	ENSAPOG00000020565	trub1	96	83.774	Acanthochromis_polyacanthus
ENSACIG00000003060	trub1	94	56.643	ENSAMEG00000014931	TRUB1	81	56.643	Ailuropoda_melanoleuca
ENSACIG00000003060	trub1	88	84.351	ENSAOCG00000017188	trub1	96	84.528	Amphiprion_ocellaris
ENSACIG00000003060	trub1	86	94.220	ENSAPEG00000015209	trub1	96	84.906	Amphiprion_percula
ENSACIG00000003060	trub1	82	82.857	ENSATEG00000023291	trub1	88	82.857	Anabas_testudineus
ENSACIG00000003060	trub1	81	64.754	ENSAPLG00000006808	TRUB1	87	64.754	Anas_platyrhynchos
ENSACIG00000003060	trub1	88	59.023	ENSACAG00000009282	TRUB1	96	59.023	Anolis_carolinensis
ENSACIG00000003060	trub1	94	57.746	ENSANAG00000022870	TRUB1	81	57.746	Aotus_nancymaae
ENSACIG00000003060	trub1	93	84.116	ENSACLG00000000823	trub1	99	84.116	Astatotilapia_calliptera
ENSACIG00000003060	trub1	96	66.551	ENSAMXG00000015845	trub1	95	66.551	Astyanax_mexicanus
ENSACIG00000003060	trub1	94	57.746	ENSBTAG00000012955	TRUB1	81	57.746	Bos_taurus
ENSACIG00000003060	trub1	94	57.746	ENSCJAG00000047815	TRUB1	81	57.746	Callithrix_jacchus
ENSACIG00000003060	trub1	94	57.394	ENSCAFG00000011688	TRUB1	81	57.394	Canis_familiaris
ENSACIG00000003060	trub1	94	57.394	ENSCAFG00020013237	TRUB1	81	57.394	Canis_lupus_dingo
ENSACIG00000003060	trub1	94	57.746	ENSCHIG00000020884	TRUB1	85	57.746	Capra_hircus
ENSACIG00000003060	trub1	94	56.690	ENSTSYG00000000446	TRUB1	81	56.690	Carlito_syrichta
ENSACIG00000003060	trub1	68	61.111	ENSCAPG00000017088	TRUB1	82	56.132	Cavia_aperea
ENSACIG00000003060	trub1	61	59.016	ENSCPOG00000040236	-	75	59.016	Cavia_porcellus
ENSACIG00000003060	trub1	62	58.065	ENSCPOG00000030129	-	72	58.065	Cavia_porcellus
ENSACIG00000003060	trub1	94	57.746	ENSCCAG00000028842	TRUB1	81	57.746	Cebus_capucinus
ENSACIG00000003060	trub1	94	57.394	ENSCATG00000033431	TRUB1	81	57.394	Cercocebus_atys
ENSACIG00000003060	trub1	61	57.923	ENSCLAG00000008664	TRUB1	75	57.923	Chinchilla_lanigera
ENSACIG00000003060	trub1	94	57.746	ENSCSAG00000004891	TRUB1	81	57.746	Chlorocebus_sabaeus
ENSACIG00000003060	trub1	81	55.785	ENSCHOG00000011931	TRUB1	70	55.785	Choloepus_hoffmanni
ENSACIG00000003060	trub1	83	64.800	ENSCPBG00000003051	TRUB1	86	64.800	Chrysemys_picta_bellii
ENSACIG00000003060	trub1	94	57.746	ENSCANG00000029445	TRUB1	81	57.746	Colobus_angolensis_palliatus
ENSACIG00000003060	trub1	80	55.230	ENSCGRG00001010322	-	66	54.472	Cricetulus_griseus_chok1gshd
ENSACIG00000003060	trub1	68	69.444	ENSCGRG00001016772	-	71	62.791	Cricetulus_griseus_chok1gshd
ENSACIG00000003060	trub1	80	62.762	ENSCGRG00000010806	Trub1	75	61.789	Cricetulus_griseus_crigri
ENSACIG00000003060	trub1	86	72.763	ENSCSEG00000011261	trub1	87	70.370	Cynoglossus_semilaevis
ENSACIG00000003060	trub1	84	77.689	ENSCVAG00000008791	trub1	77	77.689	Cyprinodon_variegatus
ENSACIG00000003060	trub1	81	74.537	ENSDARG00000053805	trub1	84	74.537	Danio_rerio
ENSACIG00000003060	trub1	94	55.986	ENSDNOG00000001069	TRUB1	81	55.986	Dasypus_novemcinctus
ENSACIG00000003060	trub1	80	62.762	ENSDORG00000010431	Trub1	71	61.789	Dipodomys_ordii
ENSACIG00000003060	trub1	60	65.116	ENSETEG00000009183	TRUB1	51	65.116	Echinops_telfairi
ENSACIG00000003060	trub1	94	56.690	ENSEASG00005014739	TRUB1	81	56.690	Equus_asinus_asinus
ENSACIG00000003060	trub1	94	56.690	ENSECAG00000007177	TRUB1	81	56.690	Equus_caballus
ENSACIG00000003060	trub1	94	51.408	ENSEEUG00000013993	TRUB1	83	50.167	Erinaceus_europaeus
ENSACIG00000003060	trub1	93	70.251	ENSELUG00000000502	trub1	97	70.251	Esox_lucius
ENSACIG00000003060	trub1	94	57.746	ENSFCAG00000031927	TRUB1	81	57.746	Felis_catus
ENSACIG00000003060	trub1	75	66.337	ENSFALG00000002232	TRUB1	90	60.084	Ficedula_albicollis
ENSACIG00000003060	trub1	61	59.563	ENSFDAG00000008140	TRUB1	75	59.563	Fukomys_damarensis
ENSACIG00000003060	trub1	92	77.899	ENSFHEG00000004016	trub1	94	77.899	Fundulus_heteroclitus
ENSACIG00000003060	trub1	82	62.753	ENSGALG00000009091	TRUB1	84	67.391	Gallus_gallus
ENSACIG00000003060	trub1	92	77.733	ENSGAFG00000009193	trub1	94	77.733	Gambusia_affinis
ENSACIG00000003060	trub1	65	90.805	ENSGACG00000015387	trub1	89	91.160	Gasterosteus_aculeatus
ENSACIG00000003060	trub1	82	65.714	ENSGAGG00000009758	TRUB1	70	65.714	Gopherus_agassizii
ENSACIG00000003060	trub1	82	62.602	ENSGGOG00000004583	TRUB1	70	62.602	Gorilla_gorilla
ENSACIG00000003060	trub1	93	83.755	ENSHBUG00000016787	trub1	99	83.755	Haplochromis_burtoni
ENSACIG00000003060	trub1	82	62.195	ENSHGLG00000015314	TRUB1	70	62.195	Heterocephalus_glaber_female
ENSACIG00000003060	trub1	61	59.016	ENSHGLG00100009183	TRUB1	77	59.016	Heterocephalus_glaber_male
ENSACIG00000003060	trub1	89	81.513	ENSHCOG00000017877	trub1	97	81.513	Hippocampus_comes
ENSACIG00000003060	trub1	83	72.289	ENSIPUG00000017559	trub1	88	72.289	Ictalurus_punctatus
ENSACIG00000003060	trub1	94	56.383	ENSSTOG00000003641	TRUB1	85	56.383	Ictidomys_tridecemlineatus
ENSACIG00000003060	trub1	90	58.824	ENSJJAG00000011800	Trub1	80	58.824	Jaculus_jaculus
ENSACIG00000003060	trub1	89	81.579	ENSKMAG00000006232	trub1	96	81.579	Kryptolebias_marmoratus
ENSACIG00000003060	trub1	91	84.774	ENSLBEG00000026722	trub1	96	84.774	Labrus_bergylta
ENSACIG00000003060	trub1	86	66.795	ENSLACG00000014885	TRUB1	86	66.795	Latimeria_chalumnae
ENSACIG00000003060	trub1	88	69.084	ENSLOCG00000012979	trub1	88	69.084	Lepisosteus_oculatus
ENSACIG00000003060	trub1	83	62.000	ENSLAFG00000015452	TRUB1	71	62.000	Loxodonta_africana
ENSACIG00000003060	trub1	94	57.746	ENSMFAG00000031767	TRUB1	81	57.746	Macaca_fascicularis
ENSACIG00000003060	trub1	94	57.746	ENSMMUG00000001902	TRUB1	81	57.746	Macaca_mulatta
ENSACIG00000003060	trub1	94	59.075	ENSMNEG00000044646	TRUB1	81	59.075	Macaca_nemestrina
ENSACIG00000003060	trub1	94	57.746	ENSMLEG00000042655	TRUB1	81	57.746	Mandrillus_leucophaeus
ENSACIG00000003060	trub1	93	84.116	ENSMZEG00005024095	trub1	99	84.116	Maylandia_zebra
ENSACIG00000003060	trub1	90	59.567	ENSMGAG00000011135	TRUB1	95	59.567	Meleagris_gallopavo
ENSACIG00000003060	trub1	80	60.669	ENSMAUG00000011101	Trub1	72	59.756	Mesocricetus_auratus
ENSACIG00000003060	trub1	94	56.842	ENSMICG00000016324	TRUB1	82	56.842	Microcebus_murinus
ENSACIG00000003060	trub1	79	63.830	ENSMOCG00000017759	Trub1	74	62.810	Microtus_ochrogaster
ENSACIG00000003060	trub1	81	63.934	ENSMODG00000009676	TRUB1	69	63.052	Monodelphis_domestica
ENSACIG00000003060	trub1	81	62.397	MGP_CAROLIEiJ_G0023100	Trub1	76	59.358	Mus_caroli
ENSACIG00000003060	trub1	81	61.570	ENSMUSG00000025086	Trub1	76	58.289	Mus_musculus
ENSACIG00000003060	trub1	82	60.976	MGP_PahariEiJ_G0014588	Trub1	73	60.976	Mus_pahari
ENSACIG00000003060	trub1	81	61.570	MGP_SPRETEiJ_G0024021	Trub1	76	58.289	Mus_spretus
ENSACIG00000003060	trub1	82	63.415	ENSMPUG00000003556	TRUB1	70	63.415	Mustela_putorius_furo
ENSACIG00000003060	trub1	88	60.526	ENSMLUG00000017686	TRUB1	78	60.526	Myotis_lucifugus
ENSACIG00000003060	trub1	82	61.382	ENSNGAG00000018682	Trub1	71	61.382	Nannospalax_galili
ENSACIG00000003060	trub1	85	90.870	ENSNBRG00000023393	trub1	93	90.870	Neolamprologus_brichardi
ENSACIG00000003060	trub1	82	62.602	ENSNLEG00000016345	TRUB1	70	62.602	Nomascus_leucogenys
ENSACIG00000003060	trub1	67	63.682	ENSMEUG00000006603	TRUB1	76	62.621	Notamacropus_eugenii
ENSACIG00000003060	trub1	82	63.821	ENSOPRG00000009371	TRUB1	72	63.821	Ochotona_princeps
ENSACIG00000003060	trub1	83	60.400	ENSODEG00000010854	TRUB1	70	60.976	Octodon_degus
ENSACIG00000003060	trub1	92	86.909	ENSONIG00000007249	trub1	100	86.909	Oreochromis_niloticus
ENSACIG00000003060	trub1	82	62.753	ENSOANG00000001556	TRUB1	82	62.753	Ornithorhynchus_anatinus
ENSACIG00000003060	trub1	88	58.427	ENSOCUG00000009456	TRUB1	77	58.427	Oryctolagus_cuniculus
ENSACIG00000003060	trub1	90	76.580	ENSORLG00000029719	trub1	96	76.580	Oryzias_latipes
ENSACIG00000003060	trub1	90	76.580	ENSORLG00020016767	trub1	95	76.580	Oryzias_latipes_hni
ENSACIG00000003060	trub1	92	75.636	ENSORLG00015014728	trub1	98	75.636	Oryzias_latipes_hsok
ENSACIG00000003060	trub1	86	78.378	ENSOMEG00000014556	trub1	91	78.378	Oryzias_melastigma
ENSACIG00000003060	trub1	94	57.042	ENSOGAG00000015895	TRUB1	81	57.042	Otolemur_garnettii
ENSACIG00000003060	trub1	94	56.701	ENSOARG00000015591	TRUB1	83	56.701	Ovis_aries
ENSACIG00000003060	trub1	82	62.602	ENSPPAG00000043645	TRUB1	70	62.602	Pan_paniscus
ENSACIG00000003060	trub1	94	57.394	ENSPPRG00000007096	TRUB1	81	57.394	Panthera_pardus
ENSACIG00000003060	trub1	94	57.394	ENSPTIG00000006378	TRUB1	81	57.394	Panthera_tigris_altaica
ENSACIG00000003060	trub1	82	62.602	ENSPTRG00000002964	TRUB1	70	62.602	Pan_troglodytes
ENSACIG00000003060	trub1	94	57.746	ENSPANG00000020712	TRUB1	81	57.746	Papio_anubis
ENSACIG00000003060	trub1	63	81.548	ENSPKIG00000003852	trub1	72	81.548	Paramormyrops_kingsleyae
ENSACIG00000003060	trub1	83	64.800	ENSPSIG00000012877	TRUB1	86	64.800	Pelodiscus_sinensis
ENSACIG00000003060	trub1	89	74.436	ENSPMGG00000000075	trub1	94	74.436	Periophthalmus_magnuspinnatus
ENSACIG00000003060	trub1	82	63.008	ENSPEMG00000011156	Trub1	72	63.008	Peromyscus_maniculatus_bairdii
ENSACIG00000003060	trub1	81	63.934	ENSPCIG00000009729	TRUB1	68	63.052	Phascolarctos_cinereus
ENSACIG00000003060	trub1	89	76.981	ENSPFOG00000009950	trub1	97	76.981	Poecilia_formosa
ENSACIG00000003060	trub1	90	77.323	ENSPLAG00000013855	trub1	94	77.323	Poecilia_latipinna
ENSACIG00000003060	trub1	92	75.725	ENSPMEG00000009064	trub1	99	75.725	Poecilia_mexicana
ENSACIG00000003060	trub1	90	76.952	ENSPREG00000003343	trub1	97	76.952	Poecilia_reticulata
ENSACIG00000003060	trub1	82	62.195	ENSPPYG00000002676	TRUB1	70	62.195	Pongo_abelii
ENSACIG00000003060	trub1	83	56.000	ENSPCAG00000008427	TRUB1	71	56.000	Procavia_capensis
ENSACIG00000003060	trub1	94	57.092	ENSPCOG00000024360	TRUB1	81	57.092	Propithecus_coquereli
ENSACIG00000003060	trub1	67	62.376	ENSPVAG00000007575	TRUB1	77	62.376	Pteropus_vampyrus
ENSACIG00000003060	trub1	93	83.755	ENSPNYG00000018614	trub1	99	83.755	Pundamilia_nyererei
ENSACIG00000003060	trub1	86	74.561	ENSPNAG00000006881	trub1	85	74.561	Pygocentrus_nattereri
ENSACIG00000003060	trub1	82	60.163	ENSRNOG00000017321	Trub1	72	60.163	Rattus_norvegicus
ENSACIG00000003060	trub1	94	50.000	ENSRBIG00000033423	TRUB1	80	50.000	Rhinopithecus_bieti
ENSACIG00000003060	trub1	94	57.746	ENSRROG00000033902	TRUB1	81	57.746	Rhinopithecus_roxellana
ENSACIG00000003060	trub1	94	57.746	ENSSBOG00000024237	TRUB1	81	57.746	Saimiri_boliviensis_boliviensis
ENSACIG00000003060	trub1	67	71.271	ENSSHAG00000009346	TRUB1	72	64.186	Sarcophilus_harrisii
ENSACIG00000003060	trub1	86	71.815	ENSSFOG00015022124	trub1	88	71.815	Scleropages_formosus
ENSACIG00000003060	trub1	89	82.642	ENSSMAG00000001020	trub1	94	82.642	Scophthalmus_maximus
ENSACIG00000003060	trub1	90	83.271	ENSSDUG00000016414	trub1	97	83.271	Seriola_dumerili
ENSACIG00000003060	trub1	92	81.159	ENSSLDG00000015486	trub1	99	81.159	Seriola_lalandi_dorsalis
ENSACIG00000003060	trub1	87	61.977	ENSSPUG00000001642	TRUB1	90	61.977	Sphenodon_punctatus
ENSACIG00000003060	trub1	92	80.435	ENSSPAG00000001217	trub1	99	80.435	Stegastes_partitus
ENSACIG00000003060	trub1	94	57.042	ENSSSCG00000010653	TRUB1	81	57.042	Sus_scrofa
ENSACIG00000003060	trub1	88	60.674	ENSTGUG00000010971	TRUB1	96	59.341	Taeniopygia_guttata
ENSACIG00000003060	trub1	68	56.667	ENSTBEG00000002880	TRUB1	83	52.358	Tupaia_belangeri
ENSACIG00000003060	trub1	67	62.376	ENSTTRG00000005767	TRUB1	77	62.376	Tursiops_truncatus
ENSACIG00000003060	trub1	94	57.394	ENSUAMG00000024876	TRUB1	81	57.394	Ursus_americanus
ENSACIG00000003060	trub1	94	57.394	ENSUMAG00000002411	TRUB1	84	57.394	Ursus_maritimus
ENSACIG00000003060	trub1	94	59.155	ENSVPAG00000005507	TRUB1	81	59.155	Vicugna_pacos
ENSACIG00000003060	trub1	82	63.415	ENSVVUG00000010085	TRUB1	59	63.415	Vulpes_vulpes
ENSACIG00000003060	trub1	82	63.265	ENSXETG00000023828	trub1	88	63.265	Xenopus_tropicalis
ENSACIG00000003060	trub1	88	80.769	ENSXCOG00000017847	trub1	90	80.769	Xiphophorus_couchianus
ENSACIG00000003060	trub1	90	78.067	ENSXMAG00000014701	trub1	97	78.067	Xiphophorus_maculatus