EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSACIG00000004574 (Gene tree)
Gene ID
-
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Amphilophus_citrinellus
Status
putative
Strand
Minus strand
Length
2279 bases
Position
chrCCOE01001330.1:985652-987930
Accession
ZDB-GENE-161207-2
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSACIP00000005802LSMPF01423.227.9e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSACIT00000005979-432-ENSACIP00000005802143 (aa)--
Gene Model
Click here to download ENSACIG00000004574's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000004574's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSACIG00000004574lsm36033.333ENSACIG00000022689snrpd27632.927
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSACIG00000004574lsm37194.118ENSG00000170860LSM310094.118Homo_sapiens
ENSACIG00000004574lsm37199.020ENSAPOG00000018947lsm310099.020Acanthochromis_polyacanthus
ENSACIG00000004574lsm37194.118ENSAMEG00000009405LSM310094.118Ailuropoda_melanoleuca
ENSACIG00000004574lsm37199.020ENSAOCG00000007658lsm310099.020Amphiprion_ocellaris
ENSACIG00000004574lsm37199.020ENSAPEG00000018621lsm310099.020Amphiprion_percula
ENSACIG00000004574lsm37199.020ENSATEG00000005153lsm310099.020Anabas_testudineus
ENSACIG00000004574lsm36695.789ENSAPLG00000014499LSM310095.789Anas_platyrhynchos
ENSACIG00000004574lsm37195.098ENSACAG00000013503LSM310095.098Anolis_carolinensis
ENSACIG00000004574lsm37194.118ENSANAG00000034627LSM310094.118Aotus_nancymaae
ENSACIG00000004574lsm37190.196ENSANAG00000002903-10090.196Aotus_nancymaae
ENSACIG00000004574lsm36898.969ENSACLG00000001726-9498.969Astatotilapia_calliptera
ENSACIG00000004574lsm37197.059ENSAMXG00000041214lsm310097.059Astyanax_mexicanus
ENSACIG00000004574lsm36795.833ENSBTAG00000007363LSM310095.833Bos_taurus
ENSACIG00000004574lsm37169.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSACIG00000004574lsm37192.157ENSCAFG00000001760LSM310092.157Canis_familiaris
ENSACIG00000004574lsm37192.157ENSCAFG00020017266-10092.157Canis_lupus_dingo
ENSACIG00000004574lsm37191.176ENSCAFG00020026452-10091.176Canis_lupus_dingo
ENSACIG00000004574lsm37184.112ENSCAFG00020020950-10084.112Canis_lupus_dingo
ENSACIG00000004574lsm37192.157ENSCAFG00020021584-10092.157Canis_lupus_dingo
ENSACIG00000004574lsm37185.294ENSCAFG00020016680-10085.294Canis_lupus_dingo
ENSACIG00000004574lsm37194.118ENSCHIG00000024650LSM310094.118Capra_hircus
ENSACIG00000004574lsm37176.238ENSTSYG00000028528-9976.238Carlito_syrichta
ENSACIG00000004574lsm37195.098ENSTSYG00000005204-10095.098Carlito_syrichta
ENSACIG00000004574lsm36795.833ENSCAPG00000015760LSM310095.833Cavia_aperea
ENSACIG00000004574lsm37194.118ENSCPOG00000034071LSM310094.118Cavia_porcellus
ENSACIG00000004574lsm37194.118ENSCCAG00000019503-10094.118Cebus_capucinus
ENSACIG00000004574lsm37194.118ENSCCAG00000036499-10094.118Cebus_capucinus
ENSACIG00000004574lsm37174.510ENSCCAG00000032763-10074.510Cebus_capucinus
ENSACIG00000004574lsm37174.257ENSCATG00000031630-9974.257Cercocebus_atys
ENSACIG00000004574lsm37194.118ENSCATG00000039421LSM310094.118Cercocebus_atys
ENSACIG00000004574lsm37194.118ENSCLAG00000015997LSM310094.118Chinchilla_lanigera
ENSACIG00000004574lsm37189.216ENSCSAG00000019525-10089.216Chlorocebus_sabaeus
ENSACIG00000004574lsm37195.098ENSCPBG00000014531LSM310095.098Chrysemys_picta_bellii
ENSACIG00000004574lsm37180.769ENSCSAVG00000009542-10080.769Ciona_savignyi
ENSACIG00000004574lsm37194.118ENSCANG00000033944-10094.118Colobus_angolensis_palliatus
ENSACIG00000004574lsm37192.157ENSCANG00000018782-10092.157Colobus_angolensis_palliatus
ENSACIG00000004574lsm37191.176ENSCANG00000038037-10091.176Colobus_angolensis_palliatus
ENSACIG00000004574lsm37170.874ENSCGRG00001008639-10070.874Cricetulus_griseus_chok1gshd
ENSACIG00000004574lsm37079.000ENSCGRG00001011396-10079.000Cricetulus_griseus_chok1gshd
ENSACIG00000004574lsm37194.118ENSCGRG00001017598Lsm310094.118Cricetulus_griseus_chok1gshd
ENSACIG00000004574lsm37194.118ENSCGRG00000016159Lsm310094.118Cricetulus_griseus_crigri
ENSACIG00000004574lsm36681.053ENSCGRG00000012129-10081.053Cricetulus_griseus_crigri
ENSACIG00000004574lsm37893.750ENSCSEG00000015071lsm38393.750Cynoglossus_semilaevis
ENSACIG00000004574lsm37198.039ENSCVAG00000006933lsm310098.039Cyprinodon_variegatus
ENSACIG00000004574lsm37195.098ENSDARG00000089663lsm310095.098Danio_rerio
ENSACIG00000004574lsm37194.118ENSDNOG00000030808LSM310094.118Dasypus_novemcinctus
ENSACIG00000004574lsm37194.118ENSDORG00000006894-10094.118Dipodomys_ordii
ENSACIG00000004574lsm37174.510ENSDORG00000024490-10074.510Dipodomys_ordii
ENSACIG00000004574lsm37178.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSACIG00000004574lsm37194.118ENSETEG00000016207LSM310094.118Echinops_telfairi
ENSACIG00000004574lsm37188.235ENSEBUG00000004943lsm310088.235Eptatretus_burgeri
ENSACIG00000004574lsm37194.118ENSEASG00005015443LSM310094.118Equus_asinus_asinus
ENSACIG00000004574lsm37194.118ENSECAG00000007803LSM310094.118Equus_caballus
ENSACIG00000004574lsm37197.059ENSELUG00000018922lsm310097.059Esox_lucius
ENSACIG00000004574lsm37171.569ENSFCAG00000044344-10071.569Felis_catus
ENSACIG00000004574lsm37194.118ENSFCAG00000038453LSM310094.118Felis_catus
ENSACIG00000004574lsm37195.098ENSFALG00000012644LSM310095.098Ficedula_albicollis
ENSACIG00000004574lsm37194.118ENSFDAG00000011470LSM310094.118Fukomys_damarensis
ENSACIG00000004574lsm37199.020ENSFHEG00000000876lsm310099.020Fundulus_heteroclitus
ENSACIG00000004574lsm36696.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSACIG00000004574lsm37199.020ENSGAFG00000013965lsm310099.020Gambusia_affinis
ENSACIG00000004574lsm37199.020ENSGACG00000003488lsm310099.020Gasterosteus_aculeatus
ENSACIG00000004574lsm37195.098ENSGAGG00000025707LSM310095.098Gopherus_agassizii
ENSACIG00000004574lsm37194.118ENSGGOG00000010006LSM310094.118Gorilla_gorilla
ENSACIG00000004574lsm37199.020ENSHBUG00000022399lsm310099.020Haplochromis_burtoni
ENSACIG00000004574lsm37194.118ENSHGLG00000000651LSM310094.118Heterocephalus_glaber_female
ENSACIG00000004574lsm37174.510ENSHGLG00000015564-10074.510Heterocephalus_glaber_female
ENSACIG00000004574lsm37174.510ENSHGLG00100010658-10074.510Heterocephalus_glaber_male
ENSACIG00000004574lsm37194.118ENSHGLG00100011343LSM310094.118Heterocephalus_glaber_male
ENSACIG00000004574lsm37199.020ENSHCOG00000013481lsm310099.020Hippocampus_comes
ENSACIG00000004574lsm37197.059ENSIPUG00000009207lsm310097.059Ictalurus_punctatus
ENSACIG00000004574lsm37194.118ENSSTOG00000006842LSM310094.118Ictidomys_tridecemlineatus
ENSACIG00000004574lsm37186.275ENSJJAG00000012797-10086.275Jaculus_jaculus
ENSACIG00000004574lsm37171.569ENSJJAG00000018311-10071.569Jaculus_jaculus
ENSACIG00000004574lsm37194.118ENSJJAG00000017351Lsm310094.118Jaculus_jaculus
ENSACIG00000004574lsm37199.020ENSKMAG00000015182lsm310099.020Kryptolebias_marmoratus
ENSACIG00000004574lsm36996.939ENSLBEG00000021292lsm310096.939Labrus_bergylta
ENSACIG00000004574lsm37195.098ENSLOCG00000013560lsm310095.098Lepisosteus_oculatus
ENSACIG00000004574lsm37193.204ENSLAFG00000023308LSM310093.204Loxodonta_africana
ENSACIG00000004574lsm37194.118ENSMFAG00000003185LSM310094.118Macaca_fascicularis
ENSACIG00000004574lsm37171.569ENSMMUG00000043596-10071.569Macaca_mulatta
ENSACIG00000004574lsm37194.118ENSMMUG00000023126LSM310094.118Macaca_mulatta
ENSACIG00000004574lsm36974.490ENSMMUG00000002294-9574.490Macaca_mulatta
ENSACIG00000004574lsm37194.118ENSMNEG00000043632LSM310094.118Macaca_nemestrina
ENSACIG00000004574lsm37176.238ENSMNEG00000037686-9976.238Macaca_nemestrina
ENSACIG00000004574lsm37194.118ENSMLEG00000036162LSM310094.118Mandrillus_leucophaeus
ENSACIG00000004574lsm37199.020ENSMAMG00000012807lsm310099.020Mastacembelus_armatus
ENSACIG00000004574lsm39385.075ENSMZEG00005016682lsm39685.075Maylandia_zebra
ENSACIG00000004574lsm36795.833ENSMGAG00000007776LSM310095.833Meleagris_gallopavo
ENSACIG00000004574lsm37180.392ENSMICG00000027821-10080.392Microcebus_murinus
ENSACIG00000004574lsm37193.137ENSMICG00000032361-10093.137Microcebus_murinus
ENSACIG00000004574lsm37194.118ENSMOCG00000014269Lsm310094.118Microtus_ochrogaster
ENSACIG00000004574lsm37199.020ENSMMOG00000020715lsm310099.020Mola_mola
ENSACIG00000004574lsm37193.137ENSMODG00000007275LSM310093.137Monodelphis_domestica
ENSACIG00000004574lsm37199.020ENSMALG00000006485lsm310099.020Monopterus_albus
ENSACIG00000004574lsm37194.118ENSMUSG00000034192Lsm310094.118Mus_musculus
ENSACIG00000004574lsm37194.118MGP_PahariEiJ_G0022402Lsm310094.118Mus_pahari
ENSACIG00000004574lsm37194.118MGP_SPRETEiJ_G0029681Lsm310094.118Mus_spretus
ENSACIG00000004574lsm35985.882ENSMPUG00000017256-10085.882Mustela_putorius_furo
ENSACIG00000004574lsm36984.848ENSMPUG00000019120-9784.848Mustela_putorius_furo
ENSACIG00000004574lsm37189.216ENSMLUG00000024700-10089.216Myotis_lucifugus
ENSACIG00000004574lsm37194.118ENSMLUG00000010677LSM310094.118Myotis_lucifugus
ENSACIG00000004574lsm37194.118ENSNGAG00000022450Lsm310094.118Nannospalax_galili
ENSACIG00000004574lsm37170.588ENSNGAG00000013716-10070.588Nannospalax_galili
ENSACIG00000004574lsm37177.228ENSNGAG00000010207-9977.228Nannospalax_galili
ENSACIG00000004574lsm37199.020ENSNBRG00000014318lsm310099.020Neolamprologus_brichardi
ENSACIG00000004574lsm37185.294ENSNLEG00000030229-10085.294Nomascus_leucogenys
ENSACIG00000004574lsm37194.118ENSNLEG00000005079LSM310094.118Nomascus_leucogenys
ENSACIG00000004574lsm37193.137ENSODEG00000019740-10093.137Octodon_degus
ENSACIG00000004574lsm37187.255ENSODEG00000019403-10087.255Octodon_degus
ENSACIG00000004574lsm37194.118ENSODEG00000001726LSM310094.118Octodon_degus
ENSACIG00000004574lsm37192.157ENSODEG00000019158-10092.157Octodon_degus
ENSACIG00000004574lsm37199.020ENSONIG00000000370lsm310099.020Oreochromis_niloticus
ENSACIG00000004574lsm37199.020ENSONIG00000021369-10099.020Oreochromis_niloticus
ENSACIG00000004574lsm37193.137ENSOANG00000012273LSM310093.137Ornithorhynchus_anatinus
ENSACIG00000004574lsm37191.176ENSOCUG00000011088-10091.176Oryctolagus_cuniculus
ENSACIG00000004574lsm37194.118ENSOCUG00000027653-10094.118Oryctolagus_cuniculus
ENSACIG00000004574lsm37198.039ENSORLG00000025900lsm310098.039Oryzias_latipes
ENSACIG00000004574lsm37198.039ENSORLG00020007125lsm310098.039Oryzias_latipes_hni
ENSACIG00000004574lsm37198.039ENSORLG00015002944lsm310098.039Oryzias_latipes_hsok
ENSACIG00000004574lsm37198.039ENSOMEG00000001915lsm310098.039Oryzias_melastigma
ENSACIG00000004574lsm37194.118ENSOGAG00000007659-10094.118Otolemur_garnettii
ENSACIG00000004574lsm37185.294ENSOGAG00000033051-10085.294Otolemur_garnettii
ENSACIG00000004574lsm36992.857ENSOGAG00000028858-10092.857Otolemur_garnettii
ENSACIG00000004574lsm37193.204ENSOARG00000000600LSM310093.204Ovis_aries
ENSACIG00000004574lsm37194.118ENSPPAG00000034074LSM310094.118Pan_paniscus
ENSACIG00000004574lsm37194.118ENSPPRG00000012912-10094.118Panthera_pardus
ENSACIG00000004574lsm37193.137ENSPPRG00000020953-10093.137Panthera_pardus
ENSACIG00000004574lsm37187.129ENSPPRG00000010610-8987.129Panthera_pardus
ENSACIG00000004574lsm37194.118ENSPTIG00000013072-10094.118Panthera_tigris_altaica
ENSACIG00000004574lsm37194.118ENSPTIG00000003463-10094.118Panthera_tigris_altaica
ENSACIG00000004574lsm37194.118ENSPTRG00000014650LSM310094.118Pan_troglodytes
ENSACIG00000004574lsm37172.549ENSPANG00000032192-10072.549Papio_anubis
ENSACIG00000004574lsm37194.118ENSPANG00000009378LSM310094.118Papio_anubis
ENSACIG00000004574lsm38384.746ENSPKIG00000008037lsm310084.746Paramormyrops_kingsleyae
ENSACIG00000004574lsm37195.098ENSPSIG00000015720LSM310095.098Pelodiscus_sinensis
ENSACIG00000004574lsm36894.845ENSPMGG00000012103lsm39894.845Periophthalmus_magnuspinnatus
ENSACIG00000004574lsm37178.431ENSPEMG00000020213-10078.431Peromyscus_maniculatus_bairdii
ENSACIG00000004574lsm37194.118ENSPEMG00000015797Lsm310094.118Peromyscus_maniculatus_bairdii
ENSACIG00000004574lsm37199.020ENSPFOG00000008372lsm310099.020Poecilia_formosa
ENSACIG00000004574lsm37199.020ENSPLAG00000000563lsm310099.020Poecilia_latipinna
ENSACIG00000004574lsm37199.020ENSPMEG00000022052lsm310099.020Poecilia_mexicana
ENSACIG00000004574lsm37199.020ENSPREG00000022485lsm310099.020Poecilia_reticulata
ENSACIG00000004574lsm37194.118ENSPPYG00000013402LSM310094.118Pongo_abelii
ENSACIG00000004574lsm37194.118ENSPCAG00000017077LSM310094.118Procavia_capensis
ENSACIG00000004574lsm37193.137ENSPCOG00000016217-10093.137Propithecus_coquereli
ENSACIG00000004574lsm36772.917ENSPCOG00000014435-9872.917Propithecus_coquereli
ENSACIG00000004574lsm37194.118ENSPVAG00000016795LSM310094.118Pteropus_vampyrus
ENSACIG00000004574lsm39385.821ENSPNYG00000009552lsm39685.821Pundamilia_nyererei
ENSACIG00000004574lsm37197.059ENSPNAG00000023467lsm310097.059Pygocentrus_nattereri
ENSACIG00000004574lsm37194.118ENSRNOG00000008733Lsm310094.118Rattus_norvegicus
ENSACIG00000004574lsm37178.431ENSRBIG00000043783-10078.431Rhinopithecus_bieti
ENSACIG00000004574lsm37194.118ENSRBIG00000034399LSM310094.118Rhinopithecus_bieti
ENSACIG00000004574lsm37194.118ENSRROG00000033276-10094.118Rhinopithecus_roxellana
ENSACIG00000004574lsm37183.333ENSRROG00000044047-10083.333Rhinopithecus_roxellana
ENSACIG00000004574lsm37175.490ENSRROG00000044056-10075.490Rhinopithecus_roxellana
ENSACIG00000004574lsm37179.412ENSRROG00000039868-10079.412Rhinopithecus_roxellana
ENSACIG00000004574lsm37194.118ENSSBOG00000024310LSM310094.118Saimiri_boliviensis_boliviensis
ENSACIG00000004574lsm37197.059ENSSFOG00015007071lsm310097.059Scleropages_formosus
ENSACIG00000004574lsm37199.020ENSSMAG00000001818lsm310099.020Scophthalmus_maximus
ENSACIG00000004574lsm37199.020ENSSDUG00000006040lsm310099.020Seriola_dumerili
ENSACIG00000004574lsm37199.020ENSSLDG00000006399lsm310099.020Seriola_lalandi_dorsalis
ENSACIG00000004574lsm37185.294ENSSPUG00000005394LSM310085.294Sphenodon_punctatus
ENSACIG00000004574lsm36695.789ENSSPUG00000017047-9995.789Sphenodon_punctatus
ENSACIG00000004574lsm37186.275ENSSPAG00000000934lsm310086.275Stegastes_partitus
ENSACIG00000004574lsm37194.118ENSSSCG00000011601LSM310094.118Sus_scrofa
ENSACIG00000004574lsm36871.134ENSSSCG00000023718-9971.134Sus_scrofa
ENSACIG00000004574lsm37195.098ENSTGUG00000008327LSM310095.098Taeniopygia_guttata
ENSACIG00000004574lsm37199.020ENSTRUG00000023175lsm310099.020Takifugu_rubripes
ENSACIG00000004574lsm37199.020ENSTNIG00000005589lsm310099.020Tetraodon_nigroviridis
ENSACIG00000004574lsm37184.314ENSTBEG00000001050-9984.314Tupaia_belangeri
ENSACIG00000004574lsm37194.118ENSTTRG00000011197LSM310094.118Tursiops_truncatus
ENSACIG00000004574lsm37194.118ENSUAMG00000017250-10094.118Ursus_americanus
ENSACIG00000004574lsm37194.118ENSUMAG00000015905LSM310094.118Ursus_maritimus
ENSACIG00000004574lsm36695.789ENSVPAG00000010709LSM310095.789Vicugna_pacos
ENSACIG00000004574lsm37188.235ENSVVUG00000005684-10088.235Vulpes_vulpes
ENSACIG00000004574lsm37190.196ENSVVUG00000029294-10090.196Vulpes_vulpes
ENSACIG00000004574lsm37190.196ENSVVUG00000007332-9190.196Vulpes_vulpes
ENSACIG00000004574lsm37189.216ENSVVUG00000006481-10089.216Vulpes_vulpes
ENSACIG00000004574lsm37185.294ENSVVUG00000024228-10085.294Vulpes_vulpes
ENSACIG00000004574lsm37194.118ENSXETG00000011534lsm310094.118Xenopus_tropicalis
ENSACIG00000004574lsm37199.020ENSXCOG00000017432LSM310099.020Xiphophorus_couchianus
ENSACIG00000004574lsm37199.020ENSXMAG00000009151lsm310099.020Xiphophorus_maculatus

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