EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSACIG00000004685 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein%2C cytoplasmic 1a
Gene Type
protein_coding
Species
Amphilophus_citrinellus
Status
putative
Strand
Minus strand
Length
4283 bases
Position
chrCCOE01000690.1:2658342-2662624
Accession
ZDB-GENE-030131-3238
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSACIP00000005967PABPPF00658.186.4e-3211
ENSACIP00000005967RRM_5PF13893.63.4e-0812
ENSACIP00000005967RRM_5PF13893.63.4e-0822
ENSACIP00000005967RRM_1PF00076.224.1e-9314
ENSACIP00000005967RRM_1PF00076.224.1e-9324
ENSACIP00000005967RRM_1PF00076.224.1e-9334
ENSACIP00000005967RRM_1PF00076.224.1e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSACIT00000006147-1908-ENSACIP00000005967635 (aa)--
Gene Model
Click here to download ENSACIG00000004685's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000004685's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSACIG00000004685pabpc1a10086.562ENSACIG00000018366pabpc1b10086.541
ENSACIG00000004685pabpc1a5734.884ENSACIG00000004318-5534.884
ENSACIG00000004685pabpc1a7139.759ENSACIG00000015357celf5a6637.634
ENSACIG00000004685pabpc1a5736.000ENSACIG00000017780rbm197836.000
ENSACIG00000004685pabpc1a5830.769ENSACIG00000014376-7630.769
ENSACIG00000004685pabpc1a5738.251ENSACIG00000018455sf3b45438.251
ENSACIG00000004685pabpc1a9876.214ENSACIG00000021004-9976.214
ENSACIG00000004685pabpc1a5932.632ENSACIG00000006987-5632.632
ENSACIG00000004685pabpc1a6031.447ENSACIG00000004161trnau1apa7431.056
ENSACIG00000004685pabpc1a9876.592ENSACIG00000023343pabpc49876.752
ENSACIG00000004685pabpc1a5933.684ENSACIG00000021779rbms2a5033.684
ENSACIG00000004685pabpc1a5937.349ENSACIG00000010855ELAVL29937.349
ENSACIG00000004685pabpc1a6041.026ENSACIG00000021116rbm39b7241.026
ENSACIG00000004685pabpc1a5934.043ENSACIG00000016186rbms2b7833.684
ENSACIG00000004685pabpc1a5936.145ENSACIG00000008793elavl48936.145
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSACIG00000004685pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSACIG00000004685pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSACIG00000004685pabpc1a10098.583ENSAPOG00000015105pabpc1a10098.583Acanthochromis_polyacanthus
ENSACIG00000004685pabpc1a10090.596ENSAPOG00000017776pabpc1b10090.596Acanthochromis_polyacanthus
ENSACIG00000004685pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSACIG00000004685pabpc1a10090.439ENSAOCG00000019839pabpc1b10090.439Amphiprion_ocellaris
ENSACIG00000004685pabpc1a10098.740ENSAOCG00000011656pabpc1a10098.740Amphiprion_ocellaris
ENSACIG00000004685pabpc1a10098.740ENSAPEG00000006963pabpc1a10098.740Amphiprion_percula
ENSACIG00000004685pabpc1a10090.439ENSAPEG00000010435pabpc1b10090.439Amphiprion_percula
ENSACIG00000004685pabpc1a10098.425ENSATEG00000024852pabpc1a10098.425Anabas_testudineus
ENSACIG00000004685pabpc1a10089.671ENSATEG00000012917pabpc1b10089.671Anabas_testudineus
ENSACIG00000004685pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSACIG00000004685pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSACIG00000004685pabpc1a10099.213ENSACLG00000009399pabpc1a10099.213Astatotilapia_calliptera
ENSACIG00000004685pabpc1a10089.342ENSACLG00000014335pabpc1b10089.342Astatotilapia_calliptera
ENSACIG00000004685pabpc1a10090.596ENSAMXG00000008599pabpc1b10090.596Astyanax_mexicanus
ENSACIG00000004685pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSACIG00000004685pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSACIG00000004685pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSACIG00000004685pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSACIG00000004685pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSACIG00000004685pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSACIG00000004685pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSACIG00000004685pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSACIG00000004685pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSACIG00000004685pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSACIG00000004685pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSACIG00000004685pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSACIG00000004685pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSACIG00000004685pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSACIG00000004685pabpc1a5780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSACIG00000004685pabpc1a9997.943ENSCSEG00000013324pabpc1a10097.943Cynoglossus_semilaevis
ENSACIG00000004685pabpc1a10088.871ENSCSEG00000015241-10088.871Cynoglossus_semilaevis
ENSACIG00000004685pabpc1a10087.950ENSCVAG00000005489pabpc1b10087.950Cyprinodon_variegatus
ENSACIG00000004685pabpc1a10097.953ENSCVAG00000021872pabpc1a10097.953Cyprinodon_variegatus
ENSACIG00000004685pabpc1a10089.498ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSACIG00000004685pabpc1a10091.850ENSDARG00000017219pabpc1a10091.850Danio_rerio
ENSACIG00000004685pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSACIG00000004685pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSACIG00000004685pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSACIG00000004685pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSACIG00000004685pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSACIG00000004685pabpc1a10088.750ENSELUG00000015062-10088.750Esox_lucius
ENSACIG00000004685pabpc1a9994.025ENSELUG00000003614pabpc1a10094.025Esox_lucius
ENSACIG00000004685pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSACIG00000004685pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSACIG00000004685pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSACIG00000004685pabpc1a10089.342ENSFHEG00000008186pabpc1b10089.498Fundulus_heteroclitus
ENSACIG00000004685pabpc1a10097.795ENSFHEG00000018979pabpc1a10097.795Fundulus_heteroclitus
ENSACIG00000004685pabpc1a9993.354ENSGMOG00000013448pabpc1a9993.509Gadus_morhua
ENSACIG00000004685pabpc1a10081.085ENSGMOG00000002448-10081.085Gadus_morhua
ENSACIG00000004685pabpc1a10090.125ENSGAFG00000010193pabpc1b10090.282Gambusia_affinis
ENSACIG00000004685pabpc1a10097.323ENSGAFG00000019750pabpc1a10097.323Gambusia_affinis
ENSACIG00000004685pabpc1a10088.372ENSGACG00000003771pabpc1b10088.527Gasterosteus_aculeatus
ENSACIG00000004685pabpc1a10097.480ENSGACG00000003572pabpc1a10097.480Gasterosteus_aculeatus
ENSACIG00000004685pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSACIG00000004685pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSACIG00000004685pabpc1a10099.213ENSHBUG00000020487pabpc1a10099.213Haplochromis_burtoni
ENSACIG00000004685pabpc1a10089.342ENSHBUG00000002075pabpc1b10089.342Haplochromis_burtoni
ENSACIG00000004685pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSACIG00000004685pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSACIG00000004685pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSACIG00000004685pabpc1a9870.080ENSHCOG00000003175pabpc1b9969.760Hippocampus_comes
ENSACIG00000004685pabpc1a10097.953ENSHCOG00000013502pabpc1a10097.953Hippocampus_comes
ENSACIG00000004685pabpc1a7858.209ENSIPUG00000018724-7958.209Ictalurus_punctatus
ENSACIG00000004685pabpc1a10090.866ENSIPUG00000008848pabpc1a10090.866Ictalurus_punctatus
ENSACIG00000004685pabpc1a7555.717ENSIPUG00000021244-6555.717Ictalurus_punctatus
ENSACIG00000004685pabpc1a10084.301ENSIPUG00000010791-10084.301Ictalurus_punctatus
ENSACIG00000004685pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSACIG00000004685pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSACIG00000004685pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSACIG00000004685pabpc1a10097.953ENSKMAG00000000605pabpc1a10097.953Kryptolebias_marmoratus
ENSACIG00000004685pabpc1a10088.836ENSKMAG00000008049pabpc1b10088.994Kryptolebias_marmoratus
ENSACIG00000004685pabpc1a10089.498ENSLBEG00000026845pabpc1b10089.498Labrus_bergylta
ENSACIG00000004685pabpc1a10097.638ENSLBEG00000024002-10097.638Labrus_bergylta
ENSACIG00000004685pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSACIG00000004685pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSACIG00000004685pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSACIG00000004685pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSACIG00000004685pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSACIG00000004685pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSACIG00000004685pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSACIG00000004685pabpc1a10097.953ENSMAMG00000004502-10097.953Mastacembelus_armatus
ENSACIG00000004685pabpc1a10089.812ENSMAMG00000014610pabpc1b10089.812Mastacembelus_armatus
ENSACIG00000004685pabpc1a10089.342ENSMZEG00005026745pabpc1b10089.342Maylandia_zebra
ENSACIG00000004685pabpc1a10099.213ENSMZEG00005025416pabpc1a10099.213Maylandia_zebra
ENSACIG00000004685pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSACIG00000004685pabpc1a10084.929ENSMMOG00000018009pabpc1b10084.929Mola_mola
ENSACIG00000004685pabpc1a10095.469ENSMMOG00000018044pabpc1a10095.469Mola_mola
ENSACIG00000004685pabpc1a9872.552ENSMODG00000013156-9872.843Monodelphis_domestica
ENSACIG00000004685pabpc1a9965.831ENSMODG00000015024-9965.831Monodelphis_domestica
ENSACIG00000004685pabpc1a10097.953ENSMALG00000013020-10097.953Monopterus_albus
ENSACIG00000004685pabpc1a10083.516ENSMALG00000006066pabpc1b10085.400Monopterus_albus
ENSACIG00000004685pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSACIG00000004685pabpc1a10089.342ENSNBRG00000013737pabpc1b10089.342Neolamprologus_brichardi
ENSACIG00000004685pabpc1a10099.055ENSNBRG00000003068-10099.055Neolamprologus_brichardi
ENSACIG00000004685pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSACIG00000004685pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSACIG00000004685pabpc1a10098.425ENSONIG00000006871-10098.425Oreochromis_niloticus
ENSACIG00000004685pabpc1a10089.498ENSONIG00000002717pabpc1b10089.498Oreochromis_niloticus
ENSACIG00000004685pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSACIG00000004685pabpc1a9985.215ENSORLG00000003008-9985.056Oryzias_latipes
ENSACIG00000004685pabpc1a9998.810ENSORLG00000002691pabpc1a10098.810Oryzias_latipes
ENSACIG00000004685pabpc1a10096.850ENSORLG00020022398pabpc1a10096.850Oryzias_latipes_hni
ENSACIG00000004685pabpc1a10084.458ENSORLG00020022259-10084.301Oryzias_latipes_hni
ENSACIG00000004685pabpc1a10084.929ENSORLG00015010932-10084.772Oryzias_latipes_hsok
ENSACIG00000004685pabpc1a10096.693ENSORLG00015013633pabpc110096.693Oryzias_latipes_hsok
ENSACIG00000004685pabpc1a10097.638ENSOMEG00000020219pabpc1a10097.638Oryzias_melastigma
ENSACIG00000004685pabpc1a9981.693ENSOMEG00000013627pabpc1b10081.693Oryzias_melastigma
ENSACIG00000004685pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSACIG00000004685pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSACIG00000004685pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSACIG00000004685pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSACIG00000004685pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSACIG00000004685pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSACIG00000004685pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSACIG00000004685pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSACIG00000004685pabpc1a10090.282ENSPKIG00000005676pabpc1b10090.282Paramormyrops_kingsleyae
ENSACIG00000004685pabpc1a7098.427ENSPMGG00000022487pabpc1a9298.427Periophthalmus_magnuspinnatus
ENSACIG00000004685pabpc1a7092.152ENSPMGG00000023134-9792.152Periophthalmus_magnuspinnatus
ENSACIG00000004685pabpc1a9971.791ENSPCIG00000016995-5571.791Phascolarctos_cinereus
ENSACIG00000004685pabpc1a10096.445ENSPFOG00000010815pabpc1a10096.445Poecilia_formosa
ENSACIG00000004685pabpc1a10089.655ENSPFOG00000005917pabpc1b10089.812Poecilia_formosa
ENSACIG00000004685pabpc1a10089.969ENSPLAG00000001388pabpc1b10090.125Poecilia_latipinna
ENSACIG00000004685pabpc1a10098.425ENSPLAG00000004114pabpc1a10098.425Poecilia_latipinna
ENSACIG00000004685pabpc1a10098.425ENSPMEG00000001334pabpc1a10098.425Poecilia_mexicana
ENSACIG00000004685pabpc1a10089.655ENSPMEG00000014399pabpc1b10089.812Poecilia_mexicana
ENSACIG00000004685pabpc1a9996.330ENSPREG00000019595pabpc1a10096.330Poecilia_reticulata
ENSACIG00000004685pabpc1a10089.969ENSPREG00000010911pabpc1b10090.125Poecilia_reticulata
ENSACIG00000004685pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSACIG00000004685pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSACIG00000004685pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSACIG00000004685pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSACIG00000004685pabpc1a10099.213ENSPNYG00000005192pabpc1a10099.213Pundamilia_nyererei
ENSACIG00000004685pabpc1a10089.342ENSPNYG00000012578pabpc1b10089.342Pundamilia_nyererei
ENSACIG00000004685pabpc1a10089.969ENSPNAG00000024626pabpc1b10089.969Pygocentrus_nattereri
ENSACIG00000004685pabpc1a10091.523ENSPNAG00000028408pabpc1a10091.209Pygocentrus_nattereri
ENSACIG00000004685pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSACIG00000004685pabpc1a9986.353ENSRBIG00000028738-9586.353Rhinopithecus_bieti
ENSACIG00000004685pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSACIG00000004685pabpc1a9864.000ENSSHAG00000000511-10064.000Sarcophilus_harrisii
ENSACIG00000004685pabpc1a10090.581ENSSFOG00015002752-10090.581Scleropages_formosus
ENSACIG00000004685pabpc1a6978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSACIG00000004685pabpc1a10089.639ENSSFOG00015006662pabpc1a10089.796Scleropages_formosus
ENSACIG00000004685pabpc1a10097.638ENSSMAG00000010803pabpc1a10097.638Scophthalmus_maximus
ENSACIG00000004685pabpc1a10088.871ENSSMAG00000006869pabpc1b10089.028Scophthalmus_maximus
ENSACIG00000004685pabpc1a10088.558ENSSDUG00000011965pabpc1b10088.715Seriola_dumerili
ENSACIG00000004685pabpc1a10098.110ENSSDUG00000006675pabpc1a10098.110Seriola_dumerili
ENSACIG00000004685pabpc1a10090.202ENSSLDG00000014156pabpc1b10090.358Seriola_lalandi_dorsalis
ENSACIG00000004685pabpc1a10098.110ENSSLDG00000011661pabpc1a10098.110Seriola_lalandi_dorsalis
ENSACIG00000004685pabpc1a10098.740ENSSPAG00000014453-10098.740Stegastes_partitus
ENSACIG00000004685pabpc1a10090.752ENSSPAG00000019265pabpc1b10091.066Stegastes_partitus
ENSACIG00000004685pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSACIG00000004685pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSACIG00000004685pabpc1a10095.283ENSTRUG00000011577-10095.440Takifugu_rubripes
ENSACIG00000004685pabpc1a10086.228ENSTRUG00000003767-10086.228Takifugu_rubripes
ENSACIG00000004685pabpc1a10092.558ENSTNIG00000013307pabpc1a10092.713Tetraodon_nigroviridis
ENSACIG00000004685pabpc1a10086.604ENSTNIG00000009153pabpc1b10086.604Tetraodon_nigroviridis
ENSACIG00000004685pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSACIG00000004685pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSACIG00000004685pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSACIG00000004685pabpc1a9754.369ENSUMAG00000023926-8969.890Ursus_maritimus
ENSACIG00000004685pabpc1a5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSACIG00000004685pabpc1a9744.988ENSXETG00000015439-9745.392Xenopus_tropicalis
ENSACIG00000004685pabpc1a10091.811ENSXCOG00000017066pabpc1a10091.811Xiphophorus_couchianus
ENSACIG00000004685pabpc1a10085.893ENSXCOG00000019901pabpc1b10085.893Xiphophorus_couchianus
ENSACIG00000004685pabpc1a10097.795ENSXMAG00000002555pabpc1a10097.795Xiphophorus_maculatus
ENSACIG00000004685pabpc1a10090.125ENSXMAG00000003753pabpc1b10090.282Xiphophorus_maculatus

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