EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000004819 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 8287 bases
Position: chrCCOE01000287.1:1138455-1146741
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000006130	TUDOR	PF00567.24	0.00048	1	1
ENSACIP00000006130	SMN	PF06003.12	3.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000006312	-	717	-	ENSACIP00000006130	238 (aa)	-	-

Gene Model

Click here to download ENSACIG00000004819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000004819's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000004819	smndc1	100	77.406	ENSG00000119953	SMNDC1	100	77.406	Homo_sapiens
ENSACIG00000004819	smndc1	100	92.857	ENSAPOG00000021772	smndc1	100	92.857	Acanthochromis_polyacanthus
ENSACIG00000004819	smndc1	100	77.406	ENSAMEG00000005251	SMNDC1	100	77.406	Ailuropoda_melanoleuca
ENSACIG00000004819	smndc1	100	92.437	ENSAOCG00000017869	smndc1	100	92.437	Amphiprion_ocellaris
ENSACIG00000004819	smndc1	100	92.437	ENSAPEG00000007752	smndc1	100	92.437	Amphiprion_percula
ENSACIG00000004819	smndc1	100	93.277	ENSATEG00000006830	smndc1	100	93.277	Anabas_testudineus
ENSACIG00000004819	smndc1	83	77.273	ENSAPLG00000004322	SMNDC1	100	77.273	Anas_platyrhynchos
ENSACIG00000004819	smndc1	100	77.311	ENSACAG00000005983	SMNDC1	100	77.311	Anolis_carolinensis
ENSACIG00000004819	smndc1	100	77.406	ENSANAG00000032875	SMNDC1	100	77.406	Aotus_nancymaae
ENSACIG00000004819	smndc1	100	95.798	ENSACLG00000016360	smndc1	100	95.798	Astatotilapia_calliptera
ENSACIG00000004819	smndc1	100	82.773	ENSAMXG00000020310	smndc1	100	82.773	Astyanax_mexicanus
ENSACIG00000004819	smndc1	100	76.987	ENSBTAG00000000551	SMNDC1	100	76.987	Bos_taurus
ENSACIG00000004819	smndc1	100	77.406	ENSCJAG00000018624	SMNDC1	100	77.406	Callithrix_jacchus
ENSACIG00000004819	smndc1	100	77.406	ENSCAFG00000010720	SMNDC1	100	77.406	Canis_familiaris
ENSACIG00000004819	smndc1	100	77.406	ENSCAFG00020011913	SMNDC1	100	77.406	Canis_lupus_dingo
ENSACIG00000004819	smndc1	100	76.987	ENSCHIG00000010604	SMNDC1	100	76.987	Capra_hircus
ENSACIG00000004819	smndc1	100	76.050	ENSTSYG00000026454	SMNDC1	100	76.050	Carlito_syrichta
ENSACIG00000004819	smndc1	100	63.485	ENSCAPG00000009132	SMNDC1	100	73.762	Cavia_aperea
ENSACIG00000004819	smndc1	100	76.987	ENSCPOG00000031666	SMNDC1	100	76.987	Cavia_porcellus
ENSACIG00000004819	smndc1	100	77.406	ENSCCAG00000021793	SMNDC1	100	77.406	Cebus_capucinus
ENSACIG00000004819	smndc1	100	76.987	ENSCATG00000035910	SMNDC1	100	76.987	Cercocebus_atys
ENSACIG00000004819	smndc1	100	75.630	ENSCLAG00000002838	SMNDC1	100	75.630	Chinchilla_lanigera
ENSACIG00000004819	smndc1	100	77.406	ENSCSAG00000005169	SMNDC1	100	77.406	Chlorocebus_sabaeus
ENSACIG00000004819	smndc1	81	70.984	ENSCHOG00000002936	SMNDC1	100	70.984	Choloepus_hoffmanni
ENSACIG00000004819	smndc1	100	76.471	ENSCPBG00000012837	SMNDC1	100	76.471	Chrysemys_picta_bellii
ENSACIG00000004819	smndc1	100	59.833	ENSCANG00000036994	-	100	59.833	Colobus_angolensis_palliatus
ENSACIG00000004819	smndc1	100	71.548	ENSCANG00000034620	-	100	71.548	Colobus_angolensis_palliatus
ENSACIG00000004819	smndc1	100	77.406	ENSCANG00000031720	-	100	77.406	Colobus_angolensis_palliatus
ENSACIG00000004819	smndc1	100	77.824	ENSCGRG00001012973	Smndc1	100	77.824	Cricetulus_griseus_chok1gshd
ENSACIG00000004819	smndc1	100	77.824	ENSCGRG00000012396	Smndc1	100	77.824	Cricetulus_griseus_crigri
ENSACIG00000004819	smndc1	100	83.613	ENSCSEG00000015621	smndc1	100	83.613	Cynoglossus_semilaevis
ENSACIG00000004819	smndc1	100	88.235	ENSCVAG00000020432	smndc1	100	88.235	Cyprinodon_variegatus
ENSACIG00000004819	smndc1	100	83.682	ENSDARG00000056235	smndc1	100	83.682	Danio_rerio
ENSACIG00000004819	smndc1	100	77.406	ENSDNOG00000016387	SMNDC1	83	77.406	Dasypus_novemcinctus
ENSACIG00000004819	smndc1	100	77.406	ENSDORG00000023715	Smndc1	100	77.406	Dipodomys_ordii
ENSACIG00000004819	smndc1	95	41.767	FBgn0039977	CG17454	98	43.373	Drosophila_melanogaster
ENSACIG00000004819	smndc1	100	68.465	ENSEBUG00000010929	smndc1	100	70.124	Eptatretus_burgeri
ENSACIG00000004819	smndc1	100	77.406	ENSEASG00005014930	SMNDC1	100	77.406	Equus_asinus_asinus
ENSACIG00000004819	smndc1	100	77.406	ENSECAG00000029973	SMNDC1	100	77.406	Equus_caballus
ENSACIG00000004819	smndc1	83	56.281	ENSEEUG00000013407	-	100	56.281	Erinaceus_europaeus
ENSACIG00000004819	smndc1	100	84.874	ENSELUG00000000227	smndc1	100	84.874	Esox_lucius
ENSACIG00000004819	smndc1	100	77.406	ENSFCAG00000027353	SMNDC1	100	77.406	Felis_catus
ENSACIG00000004819	smndc1	100	77.731	ENSFALG00000002306	SMNDC1	100	77.731	Ficedula_albicollis
ENSACIG00000004819	smndc1	100	76.987	ENSFDAG00000006468	SMNDC1	100	76.987	Fukomys_damarensis
ENSACIG00000004819	smndc1	100	89.916	ENSFHEG00000020150	smndc1	100	89.916	Fundulus_heteroclitus
ENSACIG00000004819	smndc1	100	83.613	ENSGMOG00000016585	smndc1	100	83.613	Gadus_morhua
ENSACIG00000004819	smndc1	100	77.731	ENSGALG00000008561	SMNDC1	100	77.731	Gallus_gallus
ENSACIG00000004819	smndc1	100	89.916	ENSGAFG00000011582	smndc1	100	89.916	Gambusia_affinis
ENSACIG00000004819	smndc1	100	90.336	ENSGACG00000009468	smndc1	100	90.336	Gasterosteus_aculeatus
ENSACIG00000004819	smndc1	100	76.471	ENSGAGG00000024547	SMNDC1	100	76.471	Gopherus_agassizii
ENSACIG00000004819	smndc1	100	77.406	ENSGGOG00000010071	SMNDC1	100	77.406	Gorilla_gorilla
ENSACIG00000004819	smndc1	100	95.798	ENSHBUG00000017596	smndc1	100	95.798	Haplochromis_burtoni
ENSACIG00000004819	smndc1	100	76.987	ENSHGLG00000013390	-	100	76.987	Heterocephalus_glaber_female
ENSACIG00000004819	smndc1	100	54.918	ENSHGLG00000001157	-	100	54.918	Heterocephalus_glaber_female
ENSACIG00000004819	smndc1	100	61.066	ENSHGLG00100004278	-	100	60.081	Heterocephalus_glaber_male
ENSACIG00000004819	smndc1	100	76.987	ENSHGLG00100004814	-	100	76.987	Heterocephalus_glaber_male
ENSACIG00000004819	smndc1	100	84.937	ENSHCOG00000000783	smndc1	100	84.937	Hippocampus_comes
ENSACIG00000004819	smndc1	100	84.034	ENSIPUG00000004217	smndc1	100	84.034	Ictalurus_punctatus
ENSACIG00000004819	smndc1	100	76.050	ENSSTOG00000006088	SMNDC1	100	76.050	Ictidomys_tridecemlineatus
ENSACIG00000004819	smndc1	100	76.987	ENSJJAG00000019974	Smndc1	100	76.987	Jaculus_jaculus
ENSACIG00000004819	smndc1	100	88.655	ENSKMAG00000020134	smndc1	100	88.655	Kryptolebias_marmoratus
ENSACIG00000004819	smndc1	100	89.076	ENSLBEG00000004598	smndc1	100	89.076	Labrus_bergylta
ENSACIG00000004819	smndc1	100	74.370	ENSLACG00000007784	SMNDC1	100	74.370	Latimeria_chalumnae
ENSACIG00000004819	smndc1	100	81.513	ENSLOCG00000012355	smndc1	100	81.513	Lepisosteus_oculatus
ENSACIG00000004819	smndc1	100	76.987	ENSLAFG00000014353	SMNDC1	100	76.987	Loxodonta_africana
ENSACIG00000004819	smndc1	100	63.025	ENSMFAG00000038381	-	100	63.025	Macaca_fascicularis
ENSACIG00000004819	smndc1	100	77.406	ENSMFAG00000002433	-	100	77.406	Macaca_fascicularis
ENSACIG00000004819	smndc1	100	63.025	ENSMMUG00000045875	-	100	63.025	Macaca_mulatta
ENSACIG00000004819	smndc1	100	77.406	ENSMMUG00000007775	SMNDC1	100	77.406	Macaca_mulatta
ENSACIG00000004819	smndc1	100	77.406	ENSMNEG00000042963	-	100	77.406	Macaca_nemestrina
ENSACIG00000004819	smndc1	100	68.201	ENSMNEG00000033853	-	100	68.201	Macaca_nemestrina
ENSACIG00000004819	smndc1	100	72.917	ENSMLEG00000040236	SMNDC1	100	72.500	Mandrillus_leucophaeus
ENSACIG00000004819	smndc1	89	90.141	ENSMAMG00000018233	smndc1	87	90.141	Mastacembelus_armatus
ENSACIG00000004819	smndc1	100	95.798	ENSMZEG00005027510	smndc1	100	95.798	Maylandia_zebra
ENSACIG00000004819	smndc1	91	74.074	ENSMGAG00000010777	SMNDC1	91	74.074	Meleagris_gallopavo
ENSACIG00000004819	smndc1	100	77.406	ENSMAUG00000012243	-	100	77.406	Mesocricetus_auratus
ENSACIG00000004819	smndc1	99	63.866	ENSMAUG00000005459	-	93	63.866	Mesocricetus_auratus
ENSACIG00000004819	smndc1	100	76.569	ENSMICG00000027336	-	100	76.569	Microcebus_murinus
ENSACIG00000004819	smndc1	100	65.546	ENSMICG00000031640	-	100	65.546	Microcebus_murinus
ENSACIG00000004819	smndc1	100	76.987	ENSMOCG00000002458	Smndc1	100	76.987	Microtus_ochrogaster
ENSACIG00000004819	smndc1	100	89.076	ENSMMOG00000008856	smndc1	100	89.076	Mola_mola
ENSACIG00000004819	smndc1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSACIG00000004819	smndc1	100	91.176	ENSMALG00000017598	smndc1	100	91.176	Monopterus_albus
ENSACIG00000004819	smndc1	100	76.569	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.569	Mus_caroli
ENSACIG00000004819	smndc1	100	76.987	ENSMUSG00000025024	Smndc1	100	76.987	Mus_musculus
ENSACIG00000004819	smndc1	100	75.630	MGP_PahariEiJ_G0014560	Smndc1	100	75.630	Mus_pahari
ENSACIG00000004819	smndc1	100	76.987	MGP_SPRETEiJ_G0023993	Smndc1	100	76.987	Mus_spretus
ENSACIG00000004819	smndc1	100	77.406	ENSMPUG00000002089	SMNDC1	100	77.406	Mustela_putorius_furo
ENSACIG00000004819	smndc1	100	76.050	ENSMLUG00000016007	SMNDC1	100	76.050	Myotis_lucifugus
ENSACIG00000004819	smndc1	100	76.050	ENSNGAG00000006833	Smndc1	100	76.050	Nannospalax_galili
ENSACIG00000004819	smndc1	100	96.639	ENSNBRG00000017089	smndc1	100	96.639	Neolamprologus_brichardi
ENSACIG00000004819	smndc1	100	77.406	ENSNLEG00000015471	SMNDC1	100	77.406	Nomascus_leucogenys
ENSACIG00000004819	smndc1	82	54.040	ENSMEUG00000010120	-	98	54.040	Notamacropus_eugenii
ENSACIG00000004819	smndc1	100	76.987	ENSOPRG00000015348	SMNDC1	100	76.987	Ochotona_princeps
ENSACIG00000004819	smndc1	100	54.202	ENSODEG00000007594	-	100	53.556	Octodon_degus
ENSACIG00000004819	smndc1	100	96.639	ENSONIG00000000434	smndc1	100	96.639	Oreochromis_niloticus
ENSACIG00000004819	smndc1	100	76.471	ENSOANG00000001598	SMNDC1	100	76.471	Ornithorhynchus_anatinus
ENSACIG00000004819	smndc1	100	76.987	ENSOCUG00000008145	-	100	76.987	Oryctolagus_cuniculus
ENSACIG00000004819	smndc1	100	56.303	ENSOCUG00000012274	-	100	58.824	Oryctolagus_cuniculus
ENSACIG00000004819	smndc1	100	81.933	ENSORLG00000005934	smndc1	95	81.933	Oryzias_latipes
ENSACIG00000004819	smndc1	100	81.933	ENSORLG00020008796	smndc1	95	81.933	Oryzias_latipes_hni
ENSACIG00000004819	smndc1	100	81.513	ENSORLG00015013666	smndc1	100	81.513	Oryzias_latipes_hsok
ENSACIG00000004819	smndc1	100	81.513	ENSOMEG00000007590	smndc1	100	81.513	Oryzias_melastigma
ENSACIG00000004819	smndc1	100	76.987	ENSOGAG00000000571	SMNDC1	100	76.987	Otolemur_garnettii
ENSACIG00000004819	smndc1	100	76.987	ENSOARG00000009500	SMNDC1	100	76.987	Ovis_aries
ENSACIG00000004819	smndc1	100	77.406	ENSPPAG00000027815	SMNDC1	100	77.406	Pan_paniscus
ENSACIG00000004819	smndc1	100	77.406	ENSPPRG00000013749	SMNDC1	100	77.406	Panthera_pardus
ENSACIG00000004819	smndc1	100	77.406	ENSPTIG00000011451	SMNDC1	100	77.406	Panthera_tigris_altaica
ENSACIG00000004819	smndc1	100	77.406	ENSPTRG00000002937	SMNDC1	100	77.406	Pan_troglodytes
ENSACIG00000004819	smndc1	100	72.803	ENSPANG00000031346	-	100	72.803	Papio_anubis
ENSACIG00000004819	smndc1	100	77.406	ENSPANG00000020805	-	100	77.406	Papio_anubis
ENSACIG00000004819	smndc1	100	80.252	ENSPKIG00000017164	smndc1	100	80.252	Paramormyrops_kingsleyae
ENSACIG00000004819	smndc1	100	76.471	ENSPSIG00000012257	SMNDC1	100	76.471	Pelodiscus_sinensis
ENSACIG00000004819	smndc1	100	83.193	ENSPMGG00000015651	smndc1	100	83.193	Periophthalmus_magnuspinnatus
ENSACIG00000004819	smndc1	100	77.406	ENSPEMG00000022058	Smndc1	100	77.406	Peromyscus_maniculatus_bairdii
ENSACIG00000004819	smndc1	100	67.213	ENSPMAG00000007705	smndc1	100	67.213	Petromyzon_marinus
ENSACIG00000004819	smndc1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSACIG00000004819	smndc1	97	58.261	ENSPCIG00000009693	-	100	58.261	Phascolarctos_cinereus
ENSACIG00000004819	smndc1	100	89.496	ENSPFOG00000017113	smndc1	100	89.496	Poecilia_formosa
ENSACIG00000004819	smndc1	100	88.655	ENSPLAG00000010372	smndc1	100	88.655	Poecilia_latipinna
ENSACIG00000004819	smndc1	100	89.496	ENSPMEG00000012288	smndc1	100	89.496	Poecilia_mexicana
ENSACIG00000004819	smndc1	100	88.235	ENSPREG00000012279	smndc1	100	88.235	Poecilia_reticulata
ENSACIG00000004819	smndc1	100	77.406	ENSPPYG00000002643	SMNDC1	100	77.406	Pongo_abelii
ENSACIG00000004819	smndc1	81	73.196	ENSPCAG00000016183	SMNDC1	100	73.196	Procavia_capensis
ENSACIG00000004819	smndc1	100	76.987	ENSPCOG00000024343	SMNDC1	100	76.987	Propithecus_coquereli
ENSACIG00000004819	smndc1	100	61.088	ENSPVAG00000004368	SMNDC1	100	61.088	Pteropus_vampyrus
ENSACIG00000004819	smndc1	83	94.949	ENSPNYG00000024093	smndc1	86	94.949	Pundamilia_nyererei
ENSACIG00000004819	smndc1	100	81.092	ENSPNAG00000025285	smndc1	100	81.092	Pygocentrus_nattereri
ENSACIG00000004819	smndc1	100	76.569	ENSRNOG00000014833	Smndc1	100	76.569	Rattus_norvegicus
ENSACIG00000004819	smndc1	100	76.987	ENSRBIG00000000224	-	100	76.987	Rhinopithecus_bieti
ENSACIG00000004819	smndc1	100	61.345	ENSRBIG00000032452	-	100	61.345	Rhinopithecus_bieti
ENSACIG00000004819	smndc1	100	77.406	ENSRROG00000044992	-	100	77.406	Rhinopithecus_roxellana
ENSACIG00000004819	smndc1	100	61.765	ENSRROG00000039125	-	100	61.765	Rhinopithecus_roxellana
ENSACIG00000004819	smndc1	100	77.406	ENSSBOG00000026789	SMNDC1	100	77.406	Saimiri_boliviensis_boliviensis
ENSACIG00000004819	smndc1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSACIG00000004819	smndc1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSACIG00000004819	smndc1	100	89.916	ENSSMAG00000020118	smndc1	100	89.916	Scophthalmus_maximus
ENSACIG00000004819	smndc1	100	92.857	ENSSDUG00000015330	smndc1	100	92.857	Seriola_dumerili
ENSACIG00000004819	smndc1	100	92.437	ENSSLDG00000017325	smndc1	100	92.437	Seriola_lalandi_dorsalis
ENSACIG00000004819	smndc1	100	75.630	ENSSARG00000006063	SMNDC1	100	75.630	Sorex_araneus
ENSACIG00000004819	smndc1	100	77.311	ENSSPUG00000004574	SMNDC1	100	77.311	Sphenodon_punctatus
ENSACIG00000004819	smndc1	100	91.176	ENSSPAG00000000338	smndc1	100	91.176	Stegastes_partitus
ENSACIG00000004819	smndc1	100	77.406	ENSSSCG00000030507	SMNDC1	100	77.406	Sus_scrofa
ENSACIG00000004819	smndc1	100	77.731	ENSTGUG00000010599	SMNDC1	100	77.731	Taeniopygia_guttata
ENSACIG00000004819	smndc1	100	83.193	ENSTRUG00000023281	smndc1	100	83.193	Takifugu_rubripes
ENSACIG00000004819	smndc1	100	84.034	ENSTNIG00000013331	smndc1	100	84.034	Tetraodon_nigroviridis
ENSACIG00000004819	smndc1	100	76.987	ENSTBEG00000014337	SMNDC1	100	76.987	Tupaia_belangeri
ENSACIG00000004819	smndc1	100	77.406	ENSUAMG00000008142	SMNDC1	100	77.406	Ursus_americanus
ENSACIG00000004819	smndc1	100	77.406	ENSUMAG00000023722	SMNDC1	100	77.406	Ursus_maritimus
ENSACIG00000004819	smndc1	83	75.758	ENSVPAG00000003402	SMNDC1	100	75.758	Vicugna_pacos
ENSACIG00000004819	smndc1	100	77.406	ENSVVUG00000007820	SMNDC1	100	77.406	Vulpes_vulpes
ENSACIG00000004819	smndc1	60	63.380	ENSXETG00000015415	SMNDC1	100	63.380	Xenopus_tropicalis
ENSACIG00000004819	smndc1	100	89.496	ENSXCOG00000009159	smndc1	100	89.496	Xiphophorus_couchianus
ENSACIG00000004819	smndc1	100	90.336	ENSXMAG00000012755	smndc1	100	90.336	Xiphophorus_maculatus