EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000006112 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 17164 bases
Position: chrCCOE01000882.1:164819-181982
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000007878	CPSF_A	PF03178.15	6.8e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000008110	-	4290	-	ENSACIP00000007878	1429 (aa)	-	-

Gene Model

Click here to download ENSACIG00000006112's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000006112's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000006112	cpsf1	100	77.870	ENSG00000071894	CPSF1	100	80.093	Homo_sapiens
ENSACIG00000006112	cpsf1	100	89.844	ENSAPOG00000019621	cpsf1	100	89.573	Acanthochromis_polyacanthus
ENSACIG00000006112	cpsf1	97	77.016	ENSAMEG00000005557	CPSF1	99	76.445	Ailuropoda_melanoleuca
ENSACIG00000006112	cpsf1	100	91.022	ENSAOCG00000007120	cpsf1	100	90.953	Amphiprion_ocellaris
ENSACIG00000006112	cpsf1	100	91.931	ENSAPEG00000005755	cpsf1	100	91.655	Amphiprion_percula
ENSACIG00000006112	cpsf1	100	89.114	ENSATEG00000011097	cpsf1	100	89.317	Anabas_testudineus
ENSACIG00000006112	cpsf1	93	74.870	ENSACAG00000009655	CPSF1	100	74.664	Anolis_carolinensis
ENSACIG00000006112	cpsf1	100	78.062	ENSANAG00000036514	CPSF1	100	78.270	Aotus_nancymaae
ENSACIG00000006112	cpsf1	99	92.334	ENSACLG00000012231	cpsf1	99	92.248	Astatotilapia_calliptera
ENSACIG00000006112	cpsf1	100	79.279	ENSAMXG00000008485	cpsf1	100	78.933	Astyanax_mexicanus
ENSACIG00000006112	cpsf1	100	77.242	ENSBTAG00000008355	CPSF1	100	78.001	Bos_taurus
ENSACIG00000006112	cpsf1	100	32.324	WBGene00022301	cpsf-1	99	41.926	Caenorhabditis_elegans
ENSACIG00000006112	cpsf1	100	78.408	ENSCJAG00000021421	CPSF1	100	78.201	Callithrix_jacchus
ENSACIG00000006112	cpsf1	96	78.510	ENSCAFG00000001600	CPSF1	100	77.928	Canis_familiaris
ENSACIG00000006112	cpsf1	100	78.023	ENSCAFG00020020821	CPSF1	100	78.023	Canis_lupus_dingo
ENSACIG00000006112	cpsf1	100	76.299	ENSCHIG00000015833	CPSF1	100	76.022	Capra_hircus
ENSACIG00000006112	cpsf1	100	78.754	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSACIG00000006112	cpsf1	97	78.112	ENSCAPG00000014921	CPSF1	99	77.897	Cavia_aperea
ENSACIG00000006112	cpsf1	100	77.509	ENSCPOG00000011448	CPSF1	100	77.163	Cavia_porcellus
ENSACIG00000006112	cpsf1	100	78.478	ENSCCAG00000037658	CPSF1	100	79.817	Cebus_capucinus
ENSACIG00000006112	cpsf1	100	77.855	ENSCATG00000037234	CPSF1	100	80.093	Cercocebus_atys
ENSACIG00000006112	cpsf1	100	79.086	ENSCLAG00000012166	CPSF1	100	78.878	Chinchilla_lanigera
ENSACIG00000006112	cpsf1	100	78.339	ENSCSAG00000008502	CPSF1	100	78.131	Chlorocebus_sabaeus
ENSACIG00000006112	cpsf1	99	80.014	ENSCPBG00000018910	CPSF1	96	79.874	Chrysemys_picta_bellii
ENSACIG00000006112	cpsf1	96	47.550	ENSCING00000000514	-	100	47.406	Ciona_intestinalis
ENSACIG00000006112	cpsf1	99	48.460	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSACIG00000006112	cpsf1	98	75.159	ENSCANG00000032760	CPSF1	100	80.093	Colobus_angolensis_palliatus
ENSACIG00000006112	cpsf1	100	78.601	ENSCGRG00001016344	Cpsf1	100	78.324	Cricetulus_griseus_chok1gshd
ENSACIG00000006112	cpsf1	100	76.870	ENSCGRG00000003118	Cpsf1	100	76.593	Cricetulus_griseus_crigri
ENSACIG00000006112	cpsf1	100	87.005	ENSCSEG00000013464	cpsf1	100	86.727	Cynoglossus_semilaevis
ENSACIG00000006112	cpsf1	85	85.903	ENSCVAG00000014059	cpsf1	100	81.944	Cyprinodon_variegatus
ENSACIG00000006112	cpsf1	100	86.285	ENSDARG00000034178	cpsf1	100	86.079	Danio_rerio
ENSACIG00000006112	cpsf1	56	78.322	ENSDNOG00000043654	CPSF1	94	77.457	Dasypus_novemcinctus
ENSACIG00000006112	cpsf1	97	78.838	ENSDORG00000006278	Cpsf1	99	78.623	Dipodomys_ordii
ENSACIG00000006112	cpsf1	100	43.657	FBgn0024698	Cpsf160	100	43.616	Drosophila_melanogaster
ENSACIG00000006112	cpsf1	81	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSACIG00000006112	cpsf1	100	78.369	ENSEASG00005010774	CPSF1	100	78.300	Equus_asinus_asinus
ENSACIG00000006112	cpsf1	100	78.231	ENSECAG00000022209	CPSF1	100	78.162	Equus_caballus
ENSACIG00000006112	cpsf1	100	78.453	ENSEEUG00000000471	CPSF1	100	78.246	Erinaceus_europaeus
ENSACIG00000006112	cpsf1	100	85.076	ENSELUG00000012271	cpsf1	100	84.732	Esox_lucius
ENSACIG00000006112	cpsf1	100	79.155	ENSFDAG00000016060	CPSF1	100	78.878	Fukomys_damarensis
ENSACIG00000006112	cpsf1	100	87.751	ENSFHEG00000016801	cpsf1	100	87.958	Fundulus_heteroclitus
ENSACIG00000006112	cpsf1	100	85.754	ENSGMOG00000000796	cpsf1	100	85.990	Gadus_morhua
ENSACIG00000006112	cpsf1	95	87.500	ENSGAFG00000018890	cpsf1	100	87.500	Gambusia_affinis
ENSACIG00000006112	cpsf1	100	88.652	ENSGACG00000008703	cpsf1	100	88.033	Gasterosteus_aculeatus
ENSACIG00000006112	cpsf1	100	77.066	ENSGAGG00000004276	CPSF1	98	80.570	Gopherus_agassizii
ENSACIG00000006112	cpsf1	100	78.047	ENSGGOG00000016185	CPSF1	100	80.093	Gorilla_gorilla
ENSACIG00000006112	cpsf1	100	94.437	ENSHBUG00000018900	cpsf1	100	94.228	Haplochromis_burtoni
ENSACIG00000006112	cpsf1	100	79.017	ENSHGLG00000016139	CPSF1	100	78.670	Heterocephalus_glaber_female
ENSACIG00000006112	cpsf1	100	78.947	ENSHGLG00100009750	CPSF1	100	78.601	Heterocephalus_glaber_male
ENSACIG00000006112	cpsf1	100	86.073	ENSHCOG00000018509	cpsf1	100	86.413	Hippocampus_comes
ENSACIG00000006112	cpsf1	100	82.624	ENSIPUG00000011259	cpsf1	100	82.280	Ictalurus_punctatus
ENSACIG00000006112	cpsf1	97	78.190	ENSSTOG00000009957	CPSF1	99	78.403	Ictidomys_tridecemlineatus
ENSACIG00000006112	cpsf1	100	78.601	ENSJJAG00000023002	Cpsf1	100	78.393	Jaculus_jaculus
ENSACIG00000006112	cpsf1	91	92.790	ENSKMAG00000001940	cpsf1	99	92.790	Kryptolebias_marmoratus
ENSACIG00000006112	cpsf1	100	88.011	ENSLBEG00000003601	cpsf1	100	88.128	Labrus_bergylta
ENSACIG00000006112	cpsf1	88	77.605	ENSLACG00000000233	CPSF1	92	77.485	Latimeria_chalumnae
ENSACIG00000006112	cpsf1	100	81.875	ENSLOCG00000008484	cpsf1	100	82.219	Lepisosteus_oculatus
ENSACIG00000006112	cpsf1	97	78.143	ENSLAFG00000022601	CPSF1	100	77.714	Loxodonta_africana
ENSACIG00000006112	cpsf1	100	77.855	ENSMFAG00000037013	CPSF1	100	80.093	Macaca_fascicularis
ENSACIG00000006112	cpsf1	100	77.855	ENSMMUG00000007380	CPSF1	100	80.093	Macaca_mulatta
ENSACIG00000006112	cpsf1	97	78.351	ENSMNEG00000043564	CPSF1	100	80.093	Macaca_nemestrina
ENSACIG00000006112	cpsf1	100	77.855	ENSMLEG00000043010	CPSF1	100	80.093	Mandrillus_leucophaeus
ENSACIG00000006112	cpsf1	100	89.980	ENSMAMG00000003803	cpsf1	100	89.438	Mastacembelus_armatus
ENSACIG00000006112	cpsf1	100	90.473	ENSMZEG00005001168	cpsf1	100	90.334	Maylandia_zebra
ENSACIG00000006112	cpsf1	100	78.670	ENSMAUG00000003601	Cpsf1	100	78.324	Mesocricetus_auratus
ENSACIG00000006112	cpsf1	100	78.255	ENSMICG00000015767	CPSF1	100	77.909	Microcebus_murinus
ENSACIG00000006112	cpsf1	100	78.463	ENSMOCG00000022758	Cpsf1	100	78.116	Microtus_ochrogaster
ENSACIG00000006112	cpsf1	100	90.423	ENSMMOG00000021245	cpsf1	100	90.007	Mola_mola
ENSACIG00000006112	cpsf1	100	78.650	ENSMODG00000010755	CPSF1	100	78.788	Monodelphis_domestica
ENSACIG00000006112	cpsf1	100	89.763	ENSMALG00000020545	cpsf1	100	89.492	Monopterus_albus
ENSACIG00000006112	cpsf1	100	78.878	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.532	Mus_caroli
ENSACIG00000006112	cpsf1	100	78.878	ENSMUSG00000034022	Cpsf1	100	78.532	Mus_musculus
ENSACIG00000006112	cpsf1	100	79.017	MGP_PahariEiJ_G0019946	Cpsf1	100	78.670	Mus_pahari
ENSACIG00000006112	cpsf1	100	78.947	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.601	Mus_spretus
ENSACIG00000006112	cpsf1	94	78.534	ENSMPUG00000006419	CPSF1	93	78.756	Mustela_putorius_furo
ENSACIG00000006112	cpsf1	100	78.601	ENSNGAG00000022460	Cpsf1	100	78.186	Nannospalax_galili
ENSACIG00000006112	cpsf1	100	86.722	ENSNBRG00000000813	cpsf1	100	86.875	Neolamprologus_brichardi
ENSACIG00000006112	cpsf1	86	68.468	ENSNLEG00000010633	-	100	79.630	Nomascus_leucogenys
ENSACIG00000006112	cpsf1	81	86.628	ENSMEUG00000014922	CPSF1	83	86.628	Notamacropus_eugenii
ENSACIG00000006112	cpsf1	60	79.612	ENSOPRG00000004693	-	70	79.612	Ochotona_princeps
ENSACIG00000006112	cpsf1	100	79.086	ENSODEG00000013995	CPSF1	100	78.740	Octodon_degus
ENSACIG00000006112	cpsf1	100	95.423	ENSONIG00000007676	cpsf1	100	95.423	Oreochromis_niloticus
ENSACIG00000006112	cpsf1	59	75.714	ENSOANG00000010716	CPSF1	89	75.714	Ornithorhynchus_anatinus
ENSACIG00000006112	cpsf1	100	88.215	ENSORLG00000013544	cpsf1	100	88.079	Oryzias_latipes
ENSACIG00000006112	cpsf1	100	88.283	ENSORLG00020021693	cpsf1	100	88.147	Oryzias_latipes_hni
ENSACIG00000006112	cpsf1	100	88.215	ENSORLG00015009979	cpsf1	100	88.079	Oryzias_latipes_hsok
ENSACIG00000006112	cpsf1	100	87.995	ENSOMEG00000011849	cpsf1	100	88.063	Oryzias_melastigma
ENSACIG00000006112	cpsf1	100	78.478	ENSOGAG00000000315	CPSF1	100	78.270	Otolemur_garnettii
ENSACIG00000006112	cpsf1	100	77.993	ENSPPAG00000019280	CPSF1	100	80.543	Pan_paniscus
ENSACIG00000006112	cpsf1	100	76.735	ENSPTRG00000051253	-	100	80.543	Pan_troglodytes
ENSACIG00000006112	cpsf1	100	77.993	ENSPTRG00000049288	-	100	80.543	Pan_troglodytes
ENSACIG00000006112	cpsf1	97	78.351	ENSPANG00000015005	CPSF1	100	79.630	Papio_anubis
ENSACIG00000006112	cpsf1	100	86.238	ENSPKIG00000002582	cpsf1	100	86.126	Paramormyrops_kingsleyae
ENSACIG00000006112	cpsf1	100	78.788	ENSPCIG00000009035	CPSF1	100	78.926	Phascolarctos_cinereus
ENSACIG00000006112	cpsf1	100	86.712	ENSPFOG00000012870	cpsf1	100	86.373	Poecilia_formosa
ENSACIG00000006112	cpsf1	100	86.721	ENSPREG00000016307	cpsf1	100	86.721	Poecilia_reticulata
ENSACIG00000006112	cpsf1	100	71.836	ENSPPYG00000018973	CPSF1	100	71.419	Pongo_abelii
ENSACIG00000006112	cpsf1	92	84.659	ENSPCAG00000011541	CPSF1	94	84.659	Procavia_capensis
ENSACIG00000006112	cpsf1	100	74.775	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSACIG00000006112	cpsf1	91	87.714	ENSPVAG00000006761	CPSF1	91	87.714	Pteropus_vampyrus
ENSACIG00000006112	cpsf1	100	92.862	ENSPNYG00000004906	cpsf1	100	92.656	Pundamilia_nyererei
ENSACIG00000006112	cpsf1	100	81.579	ENSPNAG00000024395	cpsf1	100	81.233	Pygocentrus_nattereri
ENSACIG00000006112	cpsf1	100	78.849	ENSRNOG00000030705	Cpsf1	100	78.502	Rattus_norvegicus
ENSACIG00000006112	cpsf1	100	77.924	ENSRBIG00000044907	CPSF1	100	80.093	Rhinopithecus_bieti
ENSACIG00000006112	cpsf1	100	77.993	ENSRROG00000044861	CPSF1	100	80.093	Rhinopithecus_roxellana
ENSACIG00000006112	cpsf1	97	78.710	ENSSBOG00000027177	CPSF1	99	78.495	Saimiri_boliviensis_boliviensis
ENSACIG00000006112	cpsf1	100	78.650	ENSSHAG00000006500	CPSF1	100	78.857	Sarcophilus_harrisii
ENSACIG00000006112	cpsf1	100	84.069	ENSSFOG00015004606	cpsf1	100	86.890	Scleropages_formosus
ENSACIG00000006112	cpsf1	100	88.814	ENSSMAG00000020547	cpsf1	100	88.949	Scophthalmus_maximus
ENSACIG00000006112	cpsf1	100	91.806	ENSSDUG00000001100	cpsf1	100	91.319	Seriola_dumerili
ENSACIG00000006112	cpsf1	100	91.597	ENSSLDG00000003619	cpsf1	100	91.389	Seriola_lalandi_dorsalis
ENSACIG00000006112	cpsf1	89	75.000	ENSSARG00000003643	CPSF1	92	74.758	Sorex_araneus
ENSACIG00000006112	cpsf1	96	81.425	ENSSPUG00000014396	CPSF1	99	80.850	Sphenodon_punctatus
ENSACIG00000006112	cpsf1	100	90.583	ENSSPAG00000005349	cpsf1	100	90.244	Stegastes_partitus
ENSACIG00000006112	cpsf1	100	77.332	ENSSSCG00000005906	CPSF1	100	77.263	Sus_scrofa
ENSACIG00000006112	cpsf1	96	87.097	ENSTRUG00000013134	cpsf1	99	86.255	Takifugu_rubripes
ENSACIG00000006112	cpsf1	100	88.729	ENSTNIG00000014027	cpsf1	100	88.522	Tetraodon_nigroviridis
ENSACIG00000006112	cpsf1	77	74.957	ENSTBEG00000001756	CPSF1	91	74.784	Tupaia_belangeri
ENSACIG00000006112	cpsf1	89	80.690	ENSTTRG00000001937	CPSF1	90	80.517	Tursiops_truncatus
ENSACIG00000006112	cpsf1	97	78.643	ENSUAMG00000006476	CPSF1	98	78.214	Ursus_americanus
ENSACIG00000006112	cpsf1	100	87.978	ENSXCOG00000003608	cpsf1	100	87.908	Xiphophorus_couchianus
ENSACIG00000006112	cpsf1	100	87.352	ENSXMAG00000005798	cpsf1	100	87.352	Xiphophorus_maculatus