EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000007598 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 1916 bases
Position: chrCCOE01000579.1:1207189-1209104
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000009691	SMN	PF06003.12	2.5e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000009978	-	519	-	ENSACIP00000009691	173 (aa)	-	-

Gene Model

Click here to download ENSACIG00000007598's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000007598's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000007598	smn1	94	90.533	ENSACIG00000019772	-	64	89.941

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000007598	smn1	94	75.882	ENSAPOG00000011324	smn1	60	75.882	Acanthochromis_polyacanthus
ENSACIG00000007598	smn1	94	77.647	ENSAOCG00000024444	smn1	61	77.647	Amphiprion_ocellaris
ENSACIG00000007598	smn1	94	77.647	ENSAPEG00000016504	smn1	62	77.647	Amphiprion_percula
ENSACIG00000007598	smn1	94	81.765	ENSATEG00000002182	smn1	52	81.765	Anabas_testudineus
ENSACIG00000007598	smn1	94	86.391	ENSACLG00000007308	smn1	58	85.799	Astatotilapia_calliptera
ENSACIG00000007598	smn1	88	62.420	ENSAMXG00000013884	smn1	60	60.714	Astyanax_mexicanus
ENSACIG00000007598	smn1	89	57.143	ENSCGRG00001017959	-	53	57.143	Cricetulus_griseus_chok1gshd
ENSACIG00000007598	smn1	89	57.143	ENSCGRG00000007698	Smn1	53	57.143	Cricetulus_griseus_crigri
ENSACIG00000007598	smn1	100	60.526	ENSCSEG00000015227	smn1	63	64.246	Cynoglossus_semilaevis
ENSACIG00000007598	smn1	93	78.107	ENSCVAG00000007498	smn1	60	78.107	Cyprinodon_variegatus
ENSACIG00000007598	smn1	97	64.407	ENSDARG00000018494	smn1	62	65.169	Danio_rerio
ENSACIG00000007598	smn1	77	56.296	ENSDNOG00000045949	-	53	60.163	Dasypus_novemcinctus
ENSACIG00000007598	smn1	88	45.732	ENSETEG00000001406	-	56	52.066	Echinops_telfairi
ENSACIG00000007598	smn1	99	67.222	ENSELUG00000018067	smn1	60	67.456	Esox_lucius
ENSACIG00000007598	smn1	77	57.246	ENSFDAG00000017683	-	53	51.899	Fukomys_damarensis
ENSACIG00000007598	smn1	93	79.412	ENSFHEG00000018508	smn1	63	78.824	Fundulus_heteroclitus
ENSACIG00000007598	smn1	88	73.125	ENSGMOG00000017279	smn1	61	70.659	Gadus_morhua
ENSACIG00000007598	smn1	93	80.357	ENSGAFG00000009501	smn1	65	79.762	Gambusia_affinis
ENSACIG00000007598	smn1	98	80.114	ENSGACG00000010584	smn1	60	78.107	Gasterosteus_aculeatus
ENSACIG00000007598	smn1	92	39.640	ENSGAGG00000013639	-	51	44.595	Gopherus_agassizii
ENSACIG00000007598	smn1	82	57.516	ENSGGOG00000026704	-	56	66.667	Gorilla_gorilla
ENSACIG00000007598	smn1	94	86.391	ENSHBUG00000013987	smn1	61	85.799	Haplochromis_burtoni
ENSACIG00000007598	smn1	94	74.118	ENSHCOG00000017136	smn1	58	71.765	Hippocampus_comes
ENSACIG00000007598	smn1	93	61.176	ENSIPUG00000012580	smn1	54	60.234	Ictalurus_punctatus
ENSACIG00000007598	smn1	77	48.872	ENSJJAG00000014853	-	74	44.937	Jaculus_jaculus
ENSACIG00000007598	smn1	91	76.970	ENSKMAG00000007239	smn1	60	72.840	Kryptolebias_marmoratus
ENSACIG00000007598	smn1	92	78.571	ENSLBEG00000022550	smn1	61	78.443	Labrus_bergylta
ENSACIG00000007598	smn1	93	59.302	ENSLOCG00000011339	smn1	66	58.140	Lepisosteus_oculatus
ENSACIG00000007598	smn1	94	80.000	ENSMAMG00000011034	smn1	60	79.412	Mastacembelus_armatus
ENSACIG00000007598	smn1	94	86.982	ENSMZEG00005013634	smn1	61	86.391	Maylandia_zebra
ENSACIG00000007598	smn1	80	59.060	ENSMICG00000034708	-	54	67.500	Microcebus_murinus
ENSACIG00000007598	smn1	94	78.235	ENSMMOG00000005504	smn1	63	78.235	Mola_mola
ENSACIG00000007598	smn1	94	80.588	ENSMALG00000008025	smn1	60	80.000	Monopterus_albus
ENSACIG00000007598	smn1	89	59.091	MGP_CAROLIEiJ_G0018836	Smn1	54	56.688	Mus_caroli
ENSACIG00000007598	smn1	89	58.442	ENSMUSG00000021645	Smn1	58	52.128	Mus_musculus
ENSACIG00000007598	smn1	89	58.442	MGP_PahariEiJ_G0015911	Smn1	53	56.494	Mus_pahari
ENSACIG00000007598	smn1	89	58.442	MGP_SPRETEiJ_G0019718	Smn1	58	52.128	Mus_spretus
ENSACIG00000007598	smn1	94	87.574	ENSNBRG00000023000	smn1	60	86.982	Neolamprologus_brichardi
ENSACIG00000007598	smn1	94	87.574	ENSONIG00000011799	smn1	60	87.574	Oreochromis_niloticus
ENSACIG00000007598	smn1	92	77.381	ENSORLG00000010552	smn1	59	76.190	Oryzias_latipes
ENSACIG00000007598	smn1	92	76.331	ENSORLG00020007936	smn1	65	75.148	Oryzias_latipes_hni
ENSACIG00000007598	smn1	92	77.381	ENSORLG00015022425	smn1	59	76.190	Oryzias_latipes_hsok
ENSACIG00000007598	smn1	92	75.595	ENSOMEG00000007824	smn1	59	74.405	Oryzias_melastigma
ENSACIG00000007598	smn1	99	59.341	ENSPKIG00000011096	smn1	67	60.234	Paramormyrops_kingsleyae
ENSACIG00000007598	smn1	90	76.364	ENSPMGG00000012285	smn1	61	76.364	Periophthalmus_magnuspinnatus
ENSACIG00000007598	smn1	66	47.899	ENSPMAG00000000277	-	98	46.341	Petromyzon_marinus
ENSACIG00000007598	smn1	93	79.290	ENSPFOG00000007786	smn1	60	79.290	Poecilia_formosa
ENSACIG00000007598	smn1	93	80.357	ENSPLAG00000012071	smn1	65	79.762	Poecilia_latipinna
ENSACIG00000007598	smn1	93	79.762	ENSPMEG00000017085	smn1	65	79.167	Poecilia_mexicana
ENSACIG00000007598	smn1	93	79.762	ENSPREG00000005824	smn1	65	79.167	Poecilia_reticulata
ENSACIG00000007598	smn1	83	48.299	ENSPPYG00000019189	-	61	54.622	Pongo_abelii
ENSACIG00000007598	smn1	95	53.409	ENSPCOG00000022307	-	52	61.983	Propithecus_coquereli
ENSACIG00000007598	smn1	94	87.574	ENSPNYG00000014148	smn1	60	86.982	Pundamilia_nyererei
ENSACIG00000007598	smn1	93	65.680	ENSPNAG00000014007	smn1	53	64.118	Pygocentrus_nattereri
ENSACIG00000007598	smn1	89	57.143	ENSRNOG00000018067	Smn1	54	54.777	Rattus_norvegicus
ENSACIG00000007598	smn1	94	71.345	ENSSMAG00000007922	smn1	60	71.598	Scophthalmus_maximus
ENSACIG00000007598	smn1	94	84.431	ENSSDUG00000018533	smn1	60	82.941	Seriola_dumerili
ENSACIG00000007598	smn1	94	83.529	ENSSLDG00000021135	smn1	60	83.529	Seriola_lalandi_dorsalis
ENSACIG00000007598	smn1	95	79.191	ENSSPAG00000004345	smn1	64	78.824	Stegastes_partitus
ENSACIG00000007598	smn1	83	74.324	ENSTRUG00000000736	smn	60	70.833	Takifugu_rubripes
ENSACIG00000007598	smn1	94	63.068	ENSTNIG00000009892	smn1	61	61.932	Tetraodon_nigroviridis
ENSACIG00000007598	smn1	86	57.233	ENSTBEG00000002399	-	58	67.500	Tupaia_belangeri
ENSACIG00000007598	smn1	71	59.322	ENSXETG00000004912	-	76	59.322	Xenopus_tropicalis
ENSACIG00000007598	smn1	93	79.762	ENSXMAG00000001521	smn1	65	79.167	Xiphophorus_maculatus