EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000009248 (Gene tree)
Gene ID: -
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 4090 bases
Position: chrCCOE01000506.1:420120-424209
Accession: ZDB-GENE-990415-180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000011857	zf-CCCH	PF00642.24	5e-22	1	2
ENSACIP00000011857	zf-CCCH	PF00642.24	5e-22	2	2
ENSACIP00000011857	zf-CCHC	PF00098.23	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000012190	-	726	-	ENSACIP00000011857	241 (aa)	-	-

Gene Model

Click here to download ENSACIG00000009248's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000009248's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000009248	cpsf4	100	87.705	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSACIG00000009248	cpsf4	63	74.011	ENSAPOG00000004921	cpsf4	100	74.011	Acanthochromis_polyacanthus
ENSACIG00000009248	cpsf4	100	77.695	ENSAMEG00000006252	CPSF4	100	79.554	Ailuropoda_melanoleuca
ENSACIG00000009248	cpsf4	100	85.660	ENSAOCG00000019616	cpsf4	100	85.283	Amphiprion_ocellaris
ENSACIG00000009248	cpsf4	100	85.660	ENSAPEG00000011679	cpsf4	100	85.283	Amphiprion_percula
ENSACIG00000009248	cpsf4	100	92.308	ENSATEG00000007010	cpsf4	100	90.688	Anabas_testudineus
ENSACIG00000009248	cpsf4	100	75.556	ENSACAG00000012941	CPSF4	89	76.952	Anolis_carolinensis
ENSACIG00000009248	cpsf4	100	77.695	ENSANAG00000021360	CPSF4	100	78.810	Aotus_nancymaae
ENSACIG00000009248	cpsf4	100	88.679	ENSACLG00000010374	cpsf4	100	88.679	Astatotilapia_calliptera
ENSACIG00000009248	cpsf4	100	80.000	ENSAMXG00000031647	cpsf4	100	80.370	Astyanax_mexicanus
ENSACIG00000009248	cpsf4	100	86.831	ENSBTAG00000002090	CPSF4	100	86.831	Bos_taurus
ENSACIG00000009248	cpsf4	100	77.736	ENSCJAG00000015826	CPSF4	100	78.810	Callithrix_jacchus
ENSACIG00000009248	cpsf4	100	77.695	ENSCAFG00000015036	CPSF4	99	88.024	Canis_familiaris
ENSACIG00000009248	cpsf4	100	72.862	ENSCAFG00020014462	CPSF4	100	74.721	Canis_lupus_dingo
ENSACIG00000009248	cpsf4	100	77.323	ENSCHIG00000014313	CPSF4	100	79.182	Capra_hircus
ENSACIG00000009248	cpsf4	100	78.776	ENSTSYG00000014604	-	100	77.959	Carlito_syrichta
ENSACIG00000009248	cpsf4	88	81.019	ENSTSYG00000008195	-	99	80.889	Carlito_syrichta
ENSACIG00000009248	cpsf4	100	86.885	ENSTSYG00000005712	-	100	86.885	Carlito_syrichta
ENSACIG00000009248	cpsf4	79	75.229	ENSCAPG00000013881	CPSF4	87	77.523	Cavia_aperea
ENSACIG00000009248	cpsf4	100	87.295	ENSCPOG00000001783	CPSF4	100	87.295	Cavia_porcellus
ENSACIG00000009248	cpsf4	100	77.695	ENSCCAG00000028291	CPSF4	100	78.810	Cebus_capucinus
ENSACIG00000009248	cpsf4	100	81.818	ENSCATG00000038440	CPSF4	100	81.818	Cercocebus_atys
ENSACIG00000009248	cpsf4	100	77.695	ENSCLAG00000007050	CPSF4	100	79.554	Chinchilla_lanigera
ENSACIG00000009248	cpsf4	100	77.695	ENSCSAG00000017795	CPSF4	100	78.810	Chlorocebus_sabaeus
ENSACIG00000009248	cpsf4	78	74.654	ENSCPBG00000020869	CPSF4	100	77.419	Chrysemys_picta_bellii
ENSACIG00000009248	cpsf4	68	78.788	ENSCPBG00000010269	-	100	78.313	Chrysemys_picta_bellii
ENSACIG00000009248	cpsf4	96	56.299	ENSCING00000021080	-	97	55.512	Ciona_intestinalis
ENSACIG00000009248	cpsf4	96	53.737	ENSCSAVG00000011469	-	60	72.832	Ciona_savignyi
ENSACIG00000009248	cpsf4	100	82.158	ENSCANG00000019384	CPSF4	100	82.158	Colobus_angolensis_palliatus
ENSACIG00000009248	cpsf4	100	87.295	ENSCGRG00001024184	Cpsf4	100	87.295	Cricetulus_griseus_chok1gshd
ENSACIG00000009248	cpsf4	100	77.695	ENSCGRG00000013892	Cpsf4	100	79.554	Cricetulus_griseus_crigri
ENSACIG00000009248	cpsf4	100	84.528	ENSCSEG00000019055	cpsf4	100	83.396	Cynoglossus_semilaevis
ENSACIG00000009248	cpsf4	100	84.151	ENSCVAG00000016528	cpsf4	100	83.396	Cyprinodon_variegatus
ENSACIG00000009248	cpsf4	100	79.705	ENSDARG00000020217	cpsf4	100	80.812	Danio_rerio
ENSACIG00000009248	cpsf4	100	77.695	ENSDNOG00000006344	CPSF4	100	79.554	Dasypus_novemcinctus
ENSACIG00000009248	cpsf4	78	74.654	ENSDORG00000000742	Cpsf4	100	76.959	Dipodomys_ordii
ENSACIG00000009248	cpsf4	100	54.266	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSACIG00000009248	cpsf4	78	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSACIG00000009248	cpsf4	99	69.874	ENSEBUG00000012552	cpsf4	98	69.874	Eptatretus_burgeri
ENSACIG00000009248	cpsf4	100	87.295	ENSEASG00005002487	CPSF4	100	87.295	Equus_asinus_asinus
ENSACIG00000009248	cpsf4	100	77.695	ENSECAG00000007525	CPSF4	100	79.554	Equus_caballus
ENSACIG00000009248	cpsf4	59	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSACIG00000009248	cpsf4	100	79.044	ENSELUG00000011481	cpsf4	100	79.044	Esox_lucius
ENSACIG00000009248	cpsf4	100	77.695	ENSFCAG00000015070	CPSF4	100	79.554	Felis_catus
ENSACIG00000009248	cpsf4	68	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSACIG00000009248	cpsf4	100	86.008	ENSFALG00000013799	CPSF4	100	86.008	Ficedula_albicollis
ENSACIG00000009248	cpsf4	89	75.309	ENSFDAG00000014092	CPSF4	100	77.366	Fukomys_damarensis
ENSACIG00000009248	cpsf4	100	84.906	ENSFHEG00000010880	cpsf4	100	83.774	Fundulus_heteroclitus
ENSACIG00000009248	cpsf4	100	84.109	ENSGMOG00000002330	cpsf4	100	82.558	Gadus_morhua
ENSACIG00000009248	cpsf4	64	37.222	ENSGALG00000004441	-	98	37.222	Gallus_gallus
ENSACIG00000009248	cpsf4	100	86.420	ENSGALG00000004714	CPSF4	100	86.420	Gallus_gallus
ENSACIG00000009248	cpsf4	100	84.091	ENSGAFG00000010580	cpsf4	100	82.955	Gambusia_affinis
ENSACIG00000009248	cpsf4	100	87.402	ENSGACG00000007792	cpsf4	100	87.402	Gasterosteus_aculeatus
ENSACIG00000009248	cpsf4	76	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSACIG00000009248	cpsf4	100	77.407	ENSGAGG00000021835	CPSF4	100	79.630	Gopherus_agassizii
ENSACIG00000009248	cpsf4	100	77.695	ENSGGOG00000015131	CPSF4	100	78.810	Gorilla_gorilla
ENSACIG00000009248	cpsf4	100	88.679	ENSHBUG00000013699	cpsf4	100	88.679	Haplochromis_burtoni
ENSACIG00000009248	cpsf4	100	76.838	ENSHGLG00000017150	CPSF4	100	78.229	Heterocephalus_glaber_female
ENSACIG00000009248	cpsf4	85	72.574	ENSHGLG00100009215	-	100	74.153	Heterocephalus_glaber_male
ENSACIG00000009248	cpsf4	100	58.091	ENSHGLG00100017302	-	100	57.261	Heterocephalus_glaber_male
ENSACIG00000009248	cpsf4	100	83.774	ENSHCOG00000004397	cpsf4	100	83.774	Hippocampus_comes
ENSACIG00000009248	cpsf4	100	80.812	ENSIPUG00000017147	cpsf4	100	81.181	Ictalurus_punctatus
ENSACIG00000009248	cpsf4	100	87.243	ENSSTOG00000001688	CPSF4	100	87.243	Ictidomys_tridecemlineatus
ENSACIG00000009248	cpsf4	100	77.695	ENSJJAG00000019426	Cpsf4	100	79.554	Jaculus_jaculus
ENSACIG00000009248	cpsf4	100	83.396	ENSKMAG00000015642	cpsf4	100	83.396	Kryptolebias_marmoratus
ENSACIG00000009248	cpsf4	100	63.855	ENSLACG00000018470	-	100	62.857	Latimeria_chalumnae
ENSACIG00000009248	cpsf4	100	78.148	ENSLACG00000010938	CPSF4	100	77.778	Latimeria_chalumnae
ENSACIG00000009248	cpsf4	100	75.836	ENSLOCG00000004814	cpsf4	100	79.182	Lepisosteus_oculatus
ENSACIG00000009248	cpsf4	100	78.067	ENSLAFG00000000159	CPSF4	100	79.926	Loxodonta_africana
ENSACIG00000009248	cpsf4	100	82.158	ENSMFAG00000001462	CPSF4	100	87.435	Macaca_fascicularis
ENSACIG00000009248	cpsf4	100	77.695	ENSMMUG00000019191	CPSF4	100	78.810	Macaca_mulatta
ENSACIG00000009248	cpsf4	100	82.158	ENSMNEG00000032306	CPSF4	100	82.158	Macaca_nemestrina
ENSACIG00000009248	cpsf4	100	81.818	ENSMLEG00000034721	CPSF4	100	81.818	Mandrillus_leucophaeus
ENSACIG00000009248	cpsf4	100	87.594	ENSMAMG00000006244	cpsf4	100	86.466	Mastacembelus_armatus
ENSACIG00000009248	cpsf4	100	88.679	ENSMZEG00005007515	cpsf4	100	88.679	Maylandia_zebra
ENSACIG00000009248	cpsf4	86	85.646	ENSMGAG00000004235	CPSF4	100	85.646	Meleagris_gallopavo
ENSACIG00000009248	cpsf4	100	77.695	ENSMAUG00000021253	Cpsf4	100	79.554	Mesocricetus_auratus
ENSACIG00000009248	cpsf4	100	77.695	ENSMICG00000017429	CPSF4	100	79.926	Microcebus_murinus
ENSACIG00000009248	cpsf4	100	77.695	ENSMOCG00000014901	Cpsf4	100	79.554	Microtus_ochrogaster
ENSACIG00000009248	cpsf4	100	85.714	ENSMMOG00000001813	cpsf4	100	84.962	Mola_mola
ENSACIG00000009248	cpsf4	100	80.669	ENSMODG00000001367	CPSF4	100	80.669	Monodelphis_domestica
ENSACIG00000009248	cpsf4	100	84.962	ENSMALG00000012611	cpsf4	100	84.586	Monopterus_albus
ENSACIG00000009248	cpsf4	100	87.295	MGP_CAROLIEiJ_G0028012	Cpsf4	100	87.295	Mus_caroli
ENSACIG00000009248	cpsf4	100	87.295	ENSMUSG00000029625	Cpsf4	100	87.295	Mus_musculus
ENSACIG00000009248	cpsf4	100	87.295	MGP_PahariEiJ_G0024581	Cpsf4	100	87.295	Mus_pahari
ENSACIG00000009248	cpsf4	100	87.705	MGP_SPRETEiJ_G0029013	Cpsf4	100	87.705	Mus_spretus
ENSACIG00000009248	cpsf4	100	77.695	ENSMPUG00000016508	CPSF4	100	79.554	Mustela_putorius_furo
ENSACIG00000009248	cpsf4	86	85.646	ENSMLUG00000010980	CPSF4	100	85.646	Myotis_lucifugus
ENSACIG00000009248	cpsf4	100	77.695	ENSNGAG00000001567	Cpsf4	100	79.554	Nannospalax_galili
ENSACIG00000009248	cpsf4	90	87.967	ENSNBRG00000003943	cpsf4	98	87.967	Neolamprologus_brichardi
ENSACIG00000009248	cpsf4	100	87.705	ENSNLEG00000011074	CPSF4	100	87.705	Nomascus_leucogenys
ENSACIG00000009248	cpsf4	100	80.669	ENSMEUG00000006955	CPSF4	100	80.669	Notamacropus_eugenii
ENSACIG00000009248	cpsf4	100	77.323	ENSOPRG00000013663	CPSF4	100	79.182	Ochotona_princeps
ENSACIG00000009248	cpsf4	98	75.417	ENSODEG00000018283	-	91	74.583	Octodon_degus
ENSACIG00000009248	cpsf4	100	68.127	ENSODEG00000009779	-	100	67.984	Octodon_degus
ENSACIG00000009248	cpsf4	100	77.695	ENSODEG00000011181	-	100	79.554	Octodon_degus
ENSACIG00000009248	cpsf4	100	88.679	ENSONIG00000008495	cpsf4	100	88.679	Oreochromis_niloticus
ENSACIG00000009248	cpsf4	86	78.205	ENSOANG00000007729	CPSF4	100	78.205	Ornithorhynchus_anatinus
ENSACIG00000009248	cpsf4	100	51.799	ENSOANG00000009568	-	100	50.719	Ornithorhynchus_anatinus
ENSACIG00000009248	cpsf4	100	77.407	ENSOCUG00000002437	CPSF4	70	79.182	Oryctolagus_cuniculus
ENSACIG00000009248	cpsf4	100	85.283	ENSORLG00000022798	cpsf4	100	84.151	Oryzias_latipes
ENSACIG00000009248	cpsf4	100	85.283	ENSORLG00020008548	cpsf4	100	84.151	Oryzias_latipes_hni
ENSACIG00000009248	cpsf4	100	84.906	ENSORLG00015019575	cpsf4	100	83.774	Oryzias_latipes_hsok
ENSACIG00000009248	cpsf4	100	84.528	ENSOMEG00000005176	cpsf4	100	83.396	Oryzias_melastigma
ENSACIG00000009248	cpsf4	100	77.695	ENSOGAG00000010884	CPSF4	100	78.810	Otolemur_garnettii
ENSACIG00000009248	cpsf4	100	69.597	ENSOARG00000018668	CPSF4	100	68.498	Ovis_aries
ENSACIG00000009248	cpsf4	100	77.695	ENSPPAG00000043355	CPSF4	100	78.810	Pan_paniscus
ENSACIG00000009248	cpsf4	100	77.695	ENSPPRG00000003134	CPSF4	100	79.554	Panthera_pardus
ENSACIG00000009248	cpsf4	89	76.033	ENSPTIG00000005604	CPSF4	90	78.099	Panthera_tigris_altaica
ENSACIG00000009248	cpsf4	100	77.695	ENSPTRG00000019453	CPSF4	100	78.810	Pan_troglodytes
ENSACIG00000009248	cpsf4	100	82.158	ENSPANG00000023123	CPSF4	100	82.158	Papio_anubis
ENSACIG00000009248	cpsf4	100	77.737	ENSPKIG00000014278	cpsf4	100	76.277	Paramormyrops_kingsleyae
ENSACIG00000009248	cpsf4	79	65.625	ENSPSIG00000018198	-	100	65.625	Pelodiscus_sinensis
ENSACIG00000009248	cpsf4	78	74.194	ENSPSIG00000011229	CPSF4	100	76.959	Pelodiscus_sinensis
ENSACIG00000009248	cpsf4	100	87.137	ENSPMGG00000017735	cpsf4	100	86.722	Periophthalmus_magnuspinnatus
ENSACIG00000009248	cpsf4	100	77.695	ENSPEMG00000004508	Cpsf4	100	79.554	Peromyscus_maniculatus_bairdii
ENSACIG00000009248	cpsf4	100	80.669	ENSPCIG00000024776	CPSF4	100	80.669	Phascolarctos_cinereus
ENSACIG00000009248	cpsf4	100	84.091	ENSPFOG00000014912	cpsf4	100	82.955	Poecilia_formosa
ENSACIG00000009248	cpsf4	100	83.333	ENSPLAG00000009599	cpsf4	100	82.927	Poecilia_latipinna
ENSACIG00000009248	cpsf4	100	84.091	ENSPMEG00000009790	cpsf4	100	82.955	Poecilia_mexicana
ENSACIG00000009248	cpsf4	100	83.712	ENSPREG00000018166	cpsf4	100	82.576	Poecilia_reticulata
ENSACIG00000009248	cpsf4	85	74.786	ENSPPYG00000017378	CPSF4	100	77.350	Pongo_abelii
ENSACIG00000009248	cpsf4	100	78.067	ENSPCAG00000001892	CPSF4	100	79.926	Procavia_capensis
ENSACIG00000009248	cpsf4	100	77.695	ENSPCOG00000012771	CPSF4	100	79.554	Propithecus_coquereli
ENSACIG00000009248	cpsf4	100	72.491	ENSPVAG00000007531	CPSF4	100	74.349	Pteropus_vampyrus
ENSACIG00000009248	cpsf4	100	88.679	ENSPNYG00000018559	cpsf4	100	88.679	Pundamilia_nyererei
ENSACIG00000009248	cpsf4	100	81.111	ENSPNAG00000003736	cpsf4	100	81.852	Pygocentrus_nattereri
ENSACIG00000009248	cpsf4	100	87.243	ENSRNOG00000000985	Cpsf4	100	87.243	Rattus_norvegicus
ENSACIG00000009248	cpsf4	85	75.214	ENSRBIG00000033886	CPSF4	100	77.778	Rhinopithecus_bieti
ENSACIG00000009248	cpsf4	100	87.705	ENSRROG00000040431	CPSF4	100	87.705	Rhinopithecus_roxellana
ENSACIG00000009248	cpsf4	100	77.695	ENSSBOG00000020493	CPSF4	100	87.435	Saimiri_boliviensis_boliviensis
ENSACIG00000009248	cpsf4	100	80.669	ENSSHAG00000011533	CPSF4	100	80.669	Sarcophilus_harrisii
ENSACIG00000009248	cpsf4	100	77.899	ENSSFOG00015007883	cpsf4	100	77.899	Scleropages_formosus
ENSACIG00000009248	cpsf4	100	90.164	ENSSMAG00000006374	cpsf4	100	90.164	Scophthalmus_maximus
ENSACIG00000009248	cpsf4	100	86.466	ENSSDUG00000018887	cpsf4	100	85.338	Seriola_dumerili
ENSACIG00000009248	cpsf4	100	86.466	ENSSLDG00000019078	cpsf4	100	85.338	Seriola_lalandi_dorsalis
ENSACIG00000009248	cpsf4	85	75.214	ENSSARG00000012416	CPSF4	100	77.778	Sorex_araneus
ENSACIG00000009248	cpsf4	95	61.966	ENSSPUG00000014803	-	97	61.966	Sphenodon_punctatus
ENSACIG00000009248	cpsf4	100	78.810	ENSSPUG00000003549	CPSF4	100	78.810	Sphenodon_punctatus
ENSACIG00000009248	cpsf4	100	93.776	ENSSPAG00000006174	cpsf4	100	91.701	Stegastes_partitus
ENSACIG00000009248	cpsf4	100	87.705	ENSSSCG00000026896	CPSF4	100	87.705	Sus_scrofa
ENSACIG00000009248	cpsf4	100	84.898	ENSTGUG00000007552	CPSF4	100	84.898	Taeniopygia_guttata
ENSACIG00000009248	cpsf4	100	83.650	ENSTRUG00000024220	cpsf4	100	83.650	Takifugu_rubripes
ENSACIG00000009248	cpsf4	100	84.791	ENSTNIG00000006265	cpsf4	100	84.791	Tetraodon_nigroviridis
ENSACIG00000009248	cpsf4	85	67.949	ENSTBEG00000011406	CPSF4	100	67.521	Tupaia_belangeri
ENSACIG00000009248	cpsf4	100	73.606	ENSTTRG00000003007	CPSF4	76	95.455	Tursiops_truncatus
ENSACIG00000009248	cpsf4	93	84.513	ENSUAMG00000008051	CPSF4	85	86.425	Ursus_americanus
ENSACIG00000009248	cpsf4	100	87.243	ENSUMAG00000009474	CPSF4	100	87.243	Ursus_maritimus
ENSACIG00000009248	cpsf4	100	87.295	ENSVVUG00000008824	CPSF4	100	87.295	Vulpes_vulpes
ENSACIG00000009248	cpsf4	99	58.647	ENSXETG00000004641	cpsf4l	99	58.647	Xenopus_tropicalis
ENSACIG00000009248	cpsf4	100	73.571	ENSXETG00000009892	cpsf4	100	75.269	Xenopus_tropicalis
ENSACIG00000009248	cpsf4	100	83.712	ENSXCOG00000016040	cpsf4	100	82.576	Xiphophorus_couchianus
ENSACIG00000009248	cpsf4	100	84.091	ENSXMAG00000024670	cpsf4	100	82.955	Xiphophorus_maculatus