EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000011892 (Gene tree)
Gene ID: -
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine/arginine-rich splicing factor 5a
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 7595 bases
Position: chrCCOE01000236.1:2271759-2279353
Accession: ZDB-GENE-030131-7336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000015392	RRM_1	PF00076.22	1.1e-33	1	2
ENSACIP00000015392	RRM_1	PF00076.22	1.1e-33	2	2
ENSACIP00000015382	RRM_1	PF00076.22	1.2e-33	1	2
ENSACIP00000015382	RRM_1	PF00076.22	1.2e-33	2	2
ENSACIP00000015347	RRM_1	PF00076.22	1.9e-17	1	1
ENSACIP00000015352	RRM_1	PF00076.22	3.2e-17	1	1
ENSACIP00000015382	RRM_3	PF08777.11	6.9e-08	1	1
ENSACIP00000015392	RRM_3	PF08777.11	8.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000015792	-	825	-	ENSACIP00000015382	274 (aa)	-	-
ENSACIT00000015802	-	801	-	ENSACIP00000015392	266 (aa)	-	-
ENSACIT00000015757	-	420	-	ENSACIP00000015347	139 (aa)	-	-
ENSACIT00000015763	-	522	-	ENSACIP00000015352	173 (aa)	-	-

Gene Model

Click here to download ENSACIG00000011892's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000011892's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000011892	srsf5a	56	42.169	ENSACIG00000004885	srsf7a	53	43.210
ENSACIG00000011892	srsf5a	94	61.538	ENSACIG00000018649	srsf4	89	63.846
ENSACIG00000011892	srsf5a	96	41.727	ENSACIG00000002623	-	87	45.556
ENSACIG00000011892	srsf5a	99	68.613	ENSACIG00000010742	srsf5b	82	70.229
ENSACIG00000011892	srsf5a	94	62.879	ENSACIG00000020091	-	94	62.016
ENSACIG00000011892	srsf5a	67	42.857	ENSACIG00000015765	srsf9	71	40.909
ENSACIG00000011892	srsf5a	96	38.129	ENSACIG00000008091	srsf1a	70	43.333
ENSACIG00000011892	srsf5a	96	60.448	ENSACIG00000023658	-	72	49.789

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000011892	srsf5a	98	87.500	ENSAPOG00000017395	srsf5a	90	77.122	Acanthochromis_polyacanthus
ENSACIG00000011892	srsf5a	98	87.500	ENSAOCG00000014967	srsf5a	100	79.125	Amphiprion_ocellaris
ENSACIG00000011892	srsf5a	98	87.500	ENSAPEG00000009297	srsf5a	100	78.788	Amphiprion_percula
ENSACIG00000011892	srsf5a	96	92.537	ENSATEG00000000198	srsf5a	82	88.983	Anabas_testudineus
ENSACIG00000011892	srsf5a	96	72.059	ENSAPLG00000002469	-	95	66.802	Anas_platyrhynchos
ENSACIG00000011892	srsf5a	96	74.627	ENSACAG00000029015	-	85	68.398	Anolis_carolinensis
ENSACIG00000011892	srsf5a	96	94.203	ENSACLG00000027166	srsf5a	91	81.985	Astatotilapia_calliptera
ENSACIG00000011892	srsf5a	96	88.060	ENSAMXG00000030476	srsf5a	67	86.631	Astyanax_mexicanus
ENSACIG00000011892	srsf5a	96	76.296	ENSCPBG00000021518	-	70	77.660	Chrysemys_picta_bellii
ENSACIG00000011892	srsf5a	98	55.172	ENSCSAVG00000011376	-	78	57.653	Ciona_savignyi
ENSACIG00000011892	srsf5a	96	90.000	ENSCSEG00000008109	srsf5a	64	91.500	Cynoglossus_semilaevis
ENSACIG00000011892	srsf5a	96	74.101	ENSCVAG00000016982	srsf5a	96	81.203	Cyprinodon_variegatus
ENSACIG00000011892	srsf5a	96	83.453	ENSDARG00000029818	srsf5a	100	81.618	Danio_rerio
ENSACIG00000011892	srsf5a	98	75.352	ENSELUG00000020439	srsf5a	81	68.000	Esox_lucius
ENSACIG00000011892	srsf5a	96	70.896	ENSFALG00000005098	-	64	73.295	Ficedula_albicollis
ENSACIG00000011892	srsf5a	97	73.826	ENSFHEG00000003955	srsf5a	97	75.862	Fundulus_heteroclitus
ENSACIG00000011892	srsf5a	96	82.090	ENSGMOG00000000869	srsf5a	94	86.096	Gadus_morhua
ENSACIG00000011892	srsf5a	96	71.642	ENSGALG00000033259	SRSF5A	63	73.797	Gallus_gallus
ENSACIG00000011892	srsf5a	98	64.706	ENSGAFG00000018237	srsf5a	93	57.534	Gambusia_affinis
ENSACIG00000011892	srsf5a	96	87.313	ENSGACG00000011761	srsf5a	70	89.305	Gasterosteus_aculeatus
ENSACIG00000011892	srsf5a	96	76.296	ENSGAGG00000007312	-	70	77.660	Gopherus_agassizii
ENSACIG00000011892	srsf5a	96	94.891	ENSHBUG00000014048	srsf5a	91	81.919	Haplochromis_burtoni
ENSACIG00000011892	srsf5a	96	85.075	ENSHCOG00000017557	srsf5a	85	77.821	Hippocampus_comes
ENSACIG00000011892	srsf5a	96	85.401	ENSIPUG00000003439	srsf5a	69	85.789	Ictalurus_punctatus
ENSACIG00000011892	srsf5a	96	81.481	ENSKMAG00000014937	srsf5a	72	74.262	Kryptolebias_marmoratus
ENSACIG00000011892	srsf5a	96	88.028	ENSLBEG00000017153	srsf5a	91	84.647	Labrus_bergylta
ENSACIG00000011892	srsf5a	96	80.597	ENSLACG00000017874	-	70	80.749	Latimeria_chalumnae
ENSACIG00000011892	srsf5a	96	82.836	ENSLOCG00000014075	srsf5a	82	73.387	Lepisosteus_oculatus
ENSACIG00000011892	srsf5a	98	87.500	ENSMAMG00000000192	srsf5a	92	82.692	Mastacembelus_armatus
ENSACIG00000011892	srsf5a	96	94.891	ENSMZEG00005010485	srsf5a	91	82.288	Maylandia_zebra
ENSACIG00000011892	srsf5a	96	71.642	ENSMGAG00000011888	-	96	73.964	Meleagris_gallopavo
ENSACIG00000011892	srsf5a	98	85.294	ENSMMOG00000009793	srsf5a	90	80.669	Mola_mola
ENSACIG00000011892	srsf5a	100	82.971	ENSMALG00000021194	srsf5a	90	83.534	Monopterus_albus
ENSACIG00000011892	srsf5a	96	95.588	ENSNBRG00000000771	srsf5a	81	92.017	Neolamprologus_brichardi
ENSACIG00000011892	srsf5a	96	95.588	ENSONIG00000019583	srsf5a	81	92.017	Oreochromis_niloticus
ENSACIG00000011892	srsf5a	98	80.292	ENSORLG00000009268	srsf5a	84	79.828	Oryzias_latipes
ENSACIG00000011892	srsf5a	98	80.292	ENSORLG00020003281	srsf5	84	79.828	Oryzias_latipes_hni
ENSACIG00000011892	srsf5a	96	81.481	ENSORLG00015023075	srsf5	84	79.828	Oryzias_latipes_hsok
ENSACIG00000011892	srsf5a	96	82.090	ENSOMEG00000000628	srsf5a	84	80.172	Oryzias_melastigma
ENSACIG00000011892	srsf5a	96	82.836	ENSPKIG00000002054	srsf5a	93	67.059	Paramormyrops_kingsleyae
ENSACIG00000011892	srsf5a	96	75.556	ENSPSIG00000008238	-	69	76.064	Pelodiscus_sinensis
ENSACIG00000011892	srsf5a	98	76.471	ENSPMGG00000020125	srsf5a	72	68.313	Periophthalmus_magnuspinnatus
ENSACIG00000011892	srsf5a	98	75.714	ENSPFOG00000022993	srsf5a	85	73.626	Poecilia_formosa
ENSACIG00000011892	srsf5a	97	75.540	ENSPLAG00000005508	srsf5a	85	73.529	Poecilia_latipinna
ENSACIG00000011892	srsf5a	98	75.714	ENSPMEG00000016339	srsf5a	85	68.132	Poecilia_mexicana
ENSACIG00000011892	srsf5a	98	80.142	ENSPREG00000018091	srsf5a	85	69.259	Poecilia_reticulata
ENSACIG00000011892	srsf5a	96	94.891	ENSPNYG00000021245	srsf5a	91	82.288	Pundamilia_nyererei
ENSACIG00000011892	srsf5a	96	82.734	ENSPNAG00000021333	srsf5a	66	84.492	Pygocentrus_nattereri
ENSACIG00000011892	srsf5a	96	82.836	ENSSFOG00015008377	srsf5	91	66.160	Scleropages_formosus
ENSACIG00000011892	srsf5a	88	100.000	ENSSMAG00000010899	srsf5a	83	82.609	Scophthalmus_maximus
ENSACIG00000011892	srsf5a	98	86.029	ENSSDUG00000006103	srsf5a	91	78.927	Seriola_dumerili
ENSACIG00000011892	srsf5a	98	86.029	ENSSLDG00000004146	srsf5a	90	79.310	Seriola_lalandi_dorsalis
ENSACIG00000011892	srsf5a	96	70.896	ENSSPUG00000002052	-	68	72.193	Sphenodon_punctatus
ENSACIG00000011892	srsf5a	98	86.029	ENSSPAG00000002821	srsf5a	100	80.887	Stegastes_partitus
ENSACIG00000011892	srsf5a	96	72.388	ENSTGUG00000011492	-	68	72.727	Taeniopygia_guttata
ENSACIG00000011892	srsf5a	98	89.362	ENSTRUG00000022908	srsf5a	81	85.062	Takifugu_rubripes
ENSACIG00000011892	srsf5a	96	80.741	ENSXETG00000017937	srsf5a	72	80.851	Xenopus_tropicalis
ENSACIG00000011892	srsf5a	98	76.471	ENSXCOG00000015338	srsf5a	85	76.357	Xiphophorus_couchianus
ENSACIG00000011892	srsf5a	98	80.282	ENSXMAG00000012823	srsf5a	84	68.421	Xiphophorus_maculatus