EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000012138 (Gene tree)
Gene ID: -
Gene Symbol: hnrnpub
Alias: hnrnpu|hnrpu|wu:fa66f11|wu:fc18b08|wu:fi89c08|zgc:111835|zgc:136480
Full Name: heterogeneous nuclear ribonucleoprotein Ub
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 8402 bases
Position: chrCCOE01000895.1:503380-511781
Accession: ZDB-GENE-030131-6422
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000015945	SAP	PF02037.27	1.6e-11	1	1
ENSACIP00000015929	SAP	PF02037.27	1.8e-11	1	1
ENSACIP00000015869	SAP	PF02037.27	2.1e-11	1	1
ENSACIP00000015772	SAP	PF02037.27	2.1e-11	1	1
ENSACIP00000015891	SAP	PF02037.27	2.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000016348	-	1983	-	ENSACIP00000015929	660 (aa)	-	-
ENSACIT00000016364	-	1878	-	ENSACIP00000015945	625 (aa)	-	-
ENSACIT00000016388	-	1737	-	ENSACIP00000015967	578 (aa)	-	-
ENSACIT00000016186	-	2229	-	ENSACIP00000015772	742 (aa)	-	-
ENSACIT00000016306	-	2298	-	ENSACIP00000015891	765 (aa)	-	-
ENSACIT00000016407	-	1563	-	ENSACIP00000015986	520 (aa)	-	-
ENSACIT00000016283	-	2163	-	ENSACIP00000015869	720 (aa)	-	-

Gene Model

Click here to download ENSACIG00000012138's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000012138's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000012138	hnrnpub	94	32.264	ENSACIG00000022729	si:ch211-107m4.1	82	32.815
ENSACIG00000012138	hnrnpub	99	42.368	ENSACIG00000024072	HNRNPUL1	92	41.505

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000012138	hnrnpub	87	80.952	ENSG00000153187	HNRNPU	99	64.000	Homo_sapiens
ENSACIG00000012138	hnrnpub	96	86.066	ENSAPOG00000017400	hnrnpub	100	84.605	Acanthochromis_polyacanthus
ENSACIG00000012138	hnrnpub	90	80.952	ENSAMEG00000009145	HNRNPU	81	60.297	Ailuropoda_melanoleuca
ENSACIG00000012138	hnrnpub	96	88.033	ENSAOCG00000015843	hnrnpub	100	78.358	Amphiprion_ocellaris
ENSACIG00000012138	hnrnpub	96	88.033	ENSAPEG00000014679	hnrnpub	100	78.358	Amphiprion_percula
ENSACIG00000012138	hnrnpub	96	87.196	ENSATEG00000016178	hnrnpub	98	78.034	Anabas_testudineus
ENSACIG00000012138	hnrnpub	91	63.158	ENSACAG00000004511	HNRNPU	80	60.064	Anolis_carolinensis
ENSACIG00000012138	hnrnpub	87	80.952	ENSANAG00000033895	-	98	56.414	Aotus_nancymaae
ENSACIG00000012138	hnrnpub	96	91.191	ENSACLG00000008165	hnrnpub	100	84.596	Astatotilapia_calliptera
ENSACIG00000012138	hnrnpub	87	80.952	ENSBTAG00000007606	HNRNPU	84	58.280	Bos_taurus
ENSACIG00000012138	hnrnpub	87	80.952	ENSCJAG00000016914	HNRNPU	98	56.276	Callithrix_jacchus
ENSACIG00000012138	hnrnpub	87	80.952	ENSCAFG00020000918	HNRNPU	99	51.932	Canis_lupus_dingo
ENSACIG00000012138	hnrnpub	87	80.952	ENSCHIG00000004900	HNRNPU	84	60.033	Capra_hircus
ENSACIG00000012138	hnrnpub	87	83.333	ENSCPOG00000011887	HNRNPU	81	60.197	Cavia_porcellus
ENSACIG00000012138	hnrnpub	87	80.952	ENSCCAG00000037859	-	98	56.276	Cebus_capucinus
ENSACIG00000012138	hnrnpub	87	80.952	ENSCATG00000035273	HNRNPU	98	56.414	Cercocebus_atys
ENSACIG00000012138	hnrnpub	87	83.333	ENSCLAG00000007100	HNRNPU	81	60.197	Chinchilla_lanigera
ENSACIG00000012138	hnrnpub	87	80.952	ENSCSAG00000009219	HNRNPU	83	60.066	Chlorocebus_sabaeus
ENSACIG00000012138	hnrnpub	87	80.952	ENSCHOG00000001387	HNRNPU	76	80.952	Choloepus_hoffmanni
ENSACIG00000012138	hnrnpub	97	59.612	ENSCPBG00000009415	HNRNPU	78	67.797	Chrysemys_picta_bellii
ENSACIG00000012138	hnrnpub	90	80.952	ENSCANG00000022780	HNRNPU	98	56.104	Colobus_angolensis_palliatus
ENSACIG00000012138	hnrnpub	88	80.851	ENSCGRG00001020525	Hnrnpu	83	60.132	Cricetulus_griseus_chok1gshd
ENSACIG00000012138	hnrnpub	96	79.373	ENSCSEG00000010804	hnrnpub	100	77.333	Cynoglossus_semilaevis
ENSACIG00000012138	hnrnpub	97	74.346	ENSCVAG00000004280	hnrnpub	100	71.837	Cyprinodon_variegatus
ENSACIG00000012138	hnrnpub	97	65.049	ENSDARG00000015206	hnrnpua	98	64.058	Danio_rerio
ENSACIG00000012138	hnrnpub	97	64.935	ENSDARG00000004735	hnrnpub	100	59.800	Danio_rerio
ENSACIG00000012138	hnrnpub	95	59.459	ENSDNOG00000000215	HNRNPU	99	54.604	Dasypus_novemcinctus
ENSACIG00000012138	hnrnpub	84	56.422	ENSDORG00000015491	Hnrnpu	99	52.536	Dipodomys_ordii
ENSACIG00000012138	hnrnpub	89	67.342	ENSETEG00000014565	HNRNPU	83	59.901	Echinops_telfairi
ENSACIG00000012138	hnrnpub	88	80.952	ENSEASG00005003017	HNRNPU	85	59.486	Equus_asinus_asinus
ENSACIG00000012138	hnrnpub	88	80.952	ENSECAG00000007955	HNRNPU	85	59.486	Equus_caballus
ENSACIG00000012138	hnrnpub	100	72.207	ENSELUG00000010733	hnrnpub	87	74.830	Esox_lucius
ENSACIG00000012138	hnrnpub	100	58.179	ENSELUG00000011966	hnrnpua	100	57.255	Esox_lucius
ENSACIG00000012138	hnrnpub	87	80.952	ENSFCAG00000002156	HNRNPU	99	51.995	Felis_catus
ENSACIG00000012138	hnrnpub	95	58.784	ENSFDAG00000006026	HNRNPU	99	60.526	Fukomys_damarensis
ENSACIG00000012138	hnrnpub	97	84.715	ENSFHEG00000022639	hnrnpub	99	79.864	Fundulus_heteroclitus
ENSACIG00000012138	hnrnpub	96	76.258	ENSGMOG00000001755	hnrnpub	99	70.551	Gadus_morhua
ENSACIG00000012138	hnrnpub	89	70.690	ENSGALG00000010671	HNRNPU	77	70.690	Gallus_gallus
ENSACIG00000012138	hnrnpub	96	80.192	ENSGAFG00000009369	hnrnpub	98	74.217	Gambusia_affinis
ENSACIG00000012138	hnrnpub	100	82.931	ENSGACG00000004679	hnrnpub	98	73.833	Gasterosteus_aculeatus
ENSACIG00000012138	hnrnpub	87	80.952	ENSGGOG00000004061	HNRNPU	98	56.552	Gorilla_gorilla
ENSACIG00000012138	hnrnpub	96	91.354	ENSHBUG00000012290	hnrnpub	100	84.606	Haplochromis_burtoni
ENSACIG00000012138	hnrnpub	87	83.333	ENSHGLG00000010594	-	83	60.197	Heterocephalus_glaber_female
ENSACIG00000012138	hnrnpub	91	72.414	ENSHGLG00100015093	HNRNPU	98	72.414	Heterocephalus_glaber_male
ENSACIG00000012138	hnrnpub	93	89.189	ENSHCOG00000020091	hnrnpub	100	66.988	Hippocampus_comes
ENSACIG00000012138	hnrnpub	85	89.130	ENSIPUG00000007749	hnrnpu	100	64.084	Ictalurus_punctatus
ENSACIG00000012138	hnrnpub	88	80.851	ENSJJAG00000011371	Hnrnpu	81	60.033	Jaculus_jaculus
ENSACIG00000012138	hnrnpub	96	83.740	ENSKMAG00000004532	hnrnpub	100	75.761	Kryptolebias_marmoratus
ENSACIG00000012138	hnrnpub	88	79.656	ENSLBEG00000022520	hnrnpub	100	82.745	Labrus_bergylta
ENSACIG00000012138	hnrnpub	89	80.435	ENSLACG00000017463	HNRNPU	86	58.228	Latimeria_chalumnae
ENSACIG00000012138	hnrnpub	96	91.304	ENSLOCG00000016652	hnrnpua	99	65.567	Lepisosteus_oculatus
ENSACIG00000012138	hnrnpub	88	80.952	ENSLAFG00000021377	HNRNPU	99	50.719	Loxodonta_africana
ENSACIG00000012138	hnrnpub	87	80.952	ENSMFAG00000037308	HNRNPU	98	56.414	Macaca_fascicularis
ENSACIG00000012138	hnrnpub	87	80.952	ENSMMUG00000021098	HNRNPU	85	58.307	Macaca_mulatta
ENSACIG00000012138	hnrnpub	87	80.952	ENSMNEG00000043645	HNRNPU	98	56.414	Macaca_nemestrina
ENSACIG00000012138	hnrnpub	96	87.113	ENSMAMG00000007196	hnrnpub	100	85.359	Mastacembelus_armatus
ENSACIG00000012138	hnrnpub	96	91.191	ENSMZEG00005003185	hnrnpub	100	84.724	Maylandia_zebra
ENSACIG00000012138	hnrnpub	88	80.851	ENSMAUG00000008842	Hnrnpu	99	52.625	Mesocricetus_auratus
ENSACIG00000012138	hnrnpub	90	80.952	ENSMICG00000004616	HNRNPU	99	51.589	Microcebus_murinus
ENSACIG00000012138	hnrnpub	93	62.857	ENSMOCG00000015623	Hnrnpu	77	80.851	Microtus_ochrogaster
ENSACIG00000012138	hnrnpub	89	70.175	ENSMODG00000006515	HNRNPU	77	70.175	Monodelphis_domestica
ENSACIG00000012138	hnrnpub	96	85.113	ENSMALG00000018243	hnrnpub	96	81.340	Monopterus_albus
ENSACIG00000012138	hnrnpub	88	80.851	MGP_CAROLIEiJ_G0014962	Hnrnpu	99	50.305	Mus_caroli
ENSACIG00000012138	hnrnpub	86	80.851	ENSMUSG00000039630	Hnrnpu	99	50.714	Mus_musculus
ENSACIG00000012138	hnrnpub	89	71.930	MGP_PahariEiJ_G0028193	Hnrnpu	99	50.792	Mus_pahari
ENSACIG00000012138	hnrnpub	89	71.930	MGP_SPRETEiJ_G0015761	Hnrnpu	99	50.714	Mus_spretus
ENSACIG00000012138	hnrnpub	90	83.333	ENSMLUG00000000475	HNRNPU	86	58.675	Myotis_lucifugus
ENSACIG00000012138	hnrnpub	88	80.851	ENSNGAG00000019075	Hnrnpu	99	50.549	Nannospalax_galili
ENSACIG00000012138	hnrnpub	96	91.028	ENSNBRG00000017855	hnrnpub	100	84.481	Neolamprologus_brichardi
ENSACIG00000012138	hnrnpub	86	70.175	ENSMEUG00000000541	HNRNPU	81	57.191	Notamacropus_eugenii
ENSACIG00000012138	hnrnpub	96	87.849	ENSONIG00000001260	hnrnpub	98	86.554	Oreochromis_niloticus
ENSACIG00000012138	hnrnpub	86	80.952	ENSOCUG00000014469	HNRNPU	80	57.604	Oryctolagus_cuniculus
ENSACIG00000012138	hnrnpub	100	82.361	ENSORLG00000016114	hnrnpub	100	76.810	Oryzias_latipes
ENSACIG00000012138	hnrnpub	100	79.972	ENSORLG00020005363	hnrnpub	100	77.178	Oryzias_latipes_hni
ENSACIG00000012138	hnrnpub	100	79.583	ENSORLG00015001190	hnrnpub	98	77.472	Oryzias_latipes_hsok
ENSACIG00000012138	hnrnpub	100	80.474	ENSOMEG00000014951	hnrnpub	100	82.849	Oryzias_melastigma
ENSACIG00000012138	hnrnpub	87	80.952	ENSOGAG00000014024	HNRNPU	83	60.033	Otolemur_garnettii
ENSACIG00000012138	hnrnpub	87	80.952	ENSOARG00000004985	HNRNPU	85	80.952	Ovis_aries
ENSACIG00000012138	hnrnpub	87	80.952	ENSPPAG00000038652	HNRNPU	98	56.552	Pan_paniscus
ENSACIG00000012138	hnrnpub	87	80.952	ENSPPRG00000002662	HNRNPU	97	50.000	Panthera_pardus
ENSACIG00000012138	hnrnpub	87	80.952	ENSPTRG00000002182	HNRNPU	98	56.552	Pan_troglodytes
ENSACIG00000012138	hnrnpub	87	80.952	ENSPANG00000011643	HNRNPU	98	56.414	Papio_anubis
ENSACIG00000012138	hnrnpub	100	63.830	ENSPKIG00000006885	hnrnpua	100	65.038	Paramormyrops_kingsleyae
ENSACIG00000012138	hnrnpub	100	66.042	ENSPKIG00000022332	hnrnpub	100	66.000	Paramormyrops_kingsleyae
ENSACIG00000012138	hnrnpub	89	70.175	ENSPCIG00000008657	HNRNPU	80	70.175	Phascolarctos_cinereus
ENSACIG00000012138	hnrnpub	96	82.131	ENSPFOG00000002908	hnrnpub	100	74.007	Poecilia_formosa
ENSACIG00000012138	hnrnpub	96	82.295	ENSPLAG00000004160	hnrnpub	100	74.217	Poecilia_latipinna
ENSACIG00000012138	hnrnpub	87	78.571	ENSPCOG00000003883	-	99	51.578	Propithecus_coquereli
ENSACIG00000012138	hnrnpub	87	80.952	ENSPCOG00000018655	-	99	50.126	Propithecus_coquereli
ENSACIG00000012138	hnrnpub	87	80.952	ENSPVAG00000002581	HNRNPU	81	60.362	Pteropus_vampyrus
ENSACIG00000012138	hnrnpub	96	91.517	ENSPNYG00000021642	hnrnpub	100	84.856	Pundamilia_nyererei
ENSACIG00000012138	hnrnpub	96	67.516	ENSPNAG00000001055	hnrnpub	100	63.255	Pygocentrus_nattereri
ENSACIG00000012138	hnrnpub	89	71.930	ENSRNOG00000033790	Hnrnpu	99	51.341	Rattus_norvegicus
ENSACIG00000012138	hnrnpub	88	66.667	ENSRBIG00000031519	HNRNPU	98	55.724	Rhinopithecus_bieti
ENSACIG00000012138	hnrnpub	87	80.952	ENSRROG00000041642	HNRNPU	98	56.104	Rhinopithecus_roxellana
ENSACIG00000012138	hnrnpub	100	68.041	ENSSFOG00015019004	hnrnpu	100	64.524	Scleropages_formosus
ENSACIG00000012138	hnrnpub	100	66.335	ENSSFOG00015001124	hnrnpub	100	67.164	Scleropages_formosus
ENSACIG00000012138	hnrnpub	96	80.811	ENSSMAG00000003607	hnrnpub	100	80.053	Scophthalmus_maximus
ENSACIG00000012138	hnrnpub	96	87.299	ENSSDUG00000005912	hnrnpub	100	85.366	Seriola_dumerili
ENSACIG00000012138	hnrnpub	96	87.040	ENSSLDG00000004899	hnrnpub	100	84.345	Seriola_lalandi_dorsalis
ENSACIG00000012138	hnrnpub	87	80.488	ENSSPUG00000011393	HNRNPU	90	60.461	Sphenodon_punctatus
ENSACIG00000012138	hnrnpub	96	87.213	ENSSPAG00000011853	hnrnpub	100	79.156	Stegastes_partitus
ENSACIG00000012138	hnrnpub	87	80.952	ENSSSCG00000010877	HNRNPU	83	59.868	Sus_scrofa
ENSACIG00000012138	hnrnpub	96	86.207	ENSTRUG00000007759	hnrnpub	100	77.428	Takifugu_rubripes
ENSACIG00000012138	hnrnpub	100	71.970	ENSTNIG00000009725	hnrnpub	100	72.877	Tetraodon_nigroviridis
ENSACIG00000012138	hnrnpub	87	80.952	ENSUAMG00000021120	HNRNPU	99	54.261	Ursus_americanus
ENSACIG00000012138	hnrnpub	85	72.093	ENSUMAG00000012322	HNRNPU	100	54.741	Ursus_maritimus
ENSACIG00000012138	hnrnpub	80	80.952	ENSVPAG00000010520	HNRNPU	88	56.396	Vicugna_pacos
ENSACIG00000012138	hnrnpub	87	80.952	ENSVVUG00000026524	HNRNPU	99	51.932	Vulpes_vulpes
ENSACIG00000012138	hnrnpub	99	51.961	ENSXETG00000011386	hnrnpu	80	86.957	Xenopus_tropicalis
ENSACIG00000012138	hnrnpub	96	82.190	ENSXMAG00000010356	hnrnpub	98	75.735	Xiphophorus_maculatus