EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000012234 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Minus strand
Length: 5877 bases
Position: chrCCOE01000760.1:373773-379649
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000015770	HVSL	PF09749.9	2.4e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000016184	-	816	-	ENSACIP00000015770	271 (aa)	-	-

Gene Model

Click here to download ENSACIG00000012234's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000012234's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000012234	usb1	82	53.125	ENSG00000103005	USB1	100	54.206	Homo_sapiens
ENSACIG00000012234	usb1	100	70.107	ENSAPOG00000011942	usb1	84	77.637	Acanthochromis_polyacanthus
ENSACIG00000012234	usb1	83	55.752	ENSAMEG00000017205	USB1	84	55.752	Ailuropoda_melanoleuca
ENSACIG00000012234	usb1	99	71.277	ENSAOCG00000014831	usb1	83	79.661	Amphiprion_ocellaris
ENSACIG00000012234	usb1	99	70.922	ENSAPEG00000000296	usb1	83	79.237	Amphiprion_percula
ENSACIG00000012234	usb1	89	78.926	ENSATEG00000009348	usb1	86	78.926	Anabas_testudineus
ENSACIG00000012234	usb1	82	58.222	ENSAPLG00000002756	USB1	99	58.222	Anas_platyrhynchos
ENSACIG00000012234	usb1	82	51.111	ENSACAG00000015481	USB1	98	51.111	Anolis_carolinensis
ENSACIG00000012234	usb1	82	53.571	ENSANAG00000035640	USB1	85	53.571	Aotus_nancymaae
ENSACIG00000012234	usb1	83	86.161	ENSACLG00000020586	usb1	100	75.618	Astatotilapia_calliptera
ENSACIG00000012234	usb1	99	56.410	ENSAMXG00000040146	usb1	85	58.984	Astyanax_mexicanus
ENSACIG00000012234	usb1	99	49.630	ENSBTAG00000015758	USB1	85	53.571	Bos_taurus
ENSACIG00000012234	usb1	82	54.018	ENSCJAG00000011733	USB1	85	54.018	Callithrix_jacchus
ENSACIG00000012234	usb1	99	50.186	ENSCAFG00000008556	USB1	71	51.292	Canis_familiaris
ENSACIG00000012234	usb1	99	51.111	ENSCAFG00020009263	USB1	88	53.419	Canis_lupus_dingo
ENSACIG00000012234	usb1	99	49.630	ENSCHIG00000024290	USB1	85	53.571	Capra_hircus
ENSACIG00000012234	usb1	83	53.097	ENSTSYG00000006997	USB1	85	53.097	Carlito_syrichta
ENSACIG00000012234	usb1	82	43.750	ENSCAPG00000009057	USB1	96	43.750	Cavia_aperea
ENSACIG00000012234	usb1	99	50.370	ENSCPOG00000014325	USB1	83	54.464	Cavia_porcellus
ENSACIG00000012234	usb1	82	53.571	ENSCCAG00000022132	USB1	85	53.571	Cebus_capucinus
ENSACIG00000012234	usb1	82	54.018	ENSCATG00000032174	USB1	85	54.018	Cercocebus_atys
ENSACIG00000012234	usb1	63	56.069	ENSCLAG00000007363	USB1	98	56.069	Chinchilla_lanigera
ENSACIG00000012234	usb1	82	54.018	ENSCSAG00000004783	USB1	85	54.018	Chlorocebus_sabaeus
ENSACIG00000012234	usb1	82	56.502	ENSCPBG00000026943	USB1	80	56.502	Chrysemys_picta_bellii
ENSACIG00000012234	usb1	85	30.833	ENSCSAVG00000000894	-	86	30.833	Ciona_savignyi
ENSACIG00000012234	usb1	82	53.571	ENSCANG00000037135	USB1	85	53.571	Colobus_angolensis_palliatus
ENSACIG00000012234	usb1	99	52.222	ENSCGRG00001011243	USB1	84	54.911	Cricetulus_griseus_chok1gshd
ENSACIG00000012234	usb1	99	52.222	ENSCGRG00000013252	USB1	84	54.911	Cricetulus_griseus_crigri
ENSACIG00000012234	usb1	99	66.545	ENSCSEG00000013881	usb1	81	73.094	Cynoglossus_semilaevis
ENSACIG00000012234	usb1	83	71.053	ENSCVAG00000009252	usb1	98	71.053	Cyprinodon_variegatus
ENSACIG00000012234	usb1	87	60.338	ENSDARG00000003841	usb1	85	60.338	Danio_rerio
ENSACIG00000012234	usb1	99	49.632	ENSDORG00000001888	Usb1	87	53.043	Dipodomys_ordii
ENSACIG00000012234	usb1	77	38.679	FBgn0037713	CG16790	79	38.679	Drosophila_melanogaster
ENSACIG00000012234	usb1	99	42.593	ENSETEG00000019682	USB1	86	44.541	Echinops_telfairi
ENSACIG00000012234	usb1	82	45.495	ENSEBUG00000005889	usb1	78	45.495	Eptatretus_burgeri
ENSACIG00000012234	usb1	99	50.365	ENSEASG00005005484	USB1	85	53.982	Equus_asinus_asinus
ENSACIG00000012234	usb1	99	50.183	ENSECAG00000019493	USB1	78	53.778	Equus_caballus
ENSACIG00000012234	usb1	63	52.023	ENSEEUG00000000154	USB1	65	52.023	Erinaceus_europaeus
ENSACIG00000012234	usb1	83	66.228	ENSELUG00000010974	usb1	84	66.228	Esox_lucius
ENSACIG00000012234	usb1	83	53.982	ENSFCAG00000002693	USB1	85	53.982	Felis_catus
ENSACIG00000012234	usb1	82	53.982	ENSFALG00000006876	USB1	83	54.260	Ficedula_albicollis
ENSACIG00000012234	usb1	99	50.923	ENSFDAG00000010052	USB1	84	54.018	Fukomys_damarensis
ENSACIG00000012234	usb1	88	62.041	ENSFHEG00000012334	usb1	82	67.317	Fundulus_heteroclitus
ENSACIG00000012234	usb1	82	72.197	ENSGMOG00000004228	usb1	100	72.197	Gadus_morhua
ENSACIG00000012234	usb1	82	56.502	ENSGALG00000035604	USB1	90	56.332	Gallus_gallus
ENSACIG00000012234	usb1	100	67.509	ENSGAFG00000021890	usb1	87	70.782	Gambusia_affinis
ENSACIG00000012234	usb1	83	75.221	ENSGACG00000003257	usb1	82	75.221	Gasterosteus_aculeatus
ENSACIG00000012234	usb1	99	51.673	ENSGAGG00000022572	USB1	82	56.054	Gopherus_agassizii
ENSACIG00000012234	usb1	82	53.571	ENSGGOG00000017147	USB1	85	53.571	Gorilla_gorilla
ENSACIG00000012234	usb1	87	83.544	ENSHBUG00000009823	usb1	84	83.544	Haplochromis_burtoni
ENSACIG00000012234	usb1	99	50.186	ENSHGLG00000016078	USB1	82	53.812	Heterocephalus_glaber_female
ENSACIG00000012234	usb1	99	50.186	ENSHGLG00100005562	USB1	82	53.812	Heterocephalus_glaber_male
ENSACIG00000012234	usb1	81	75.799	ENSHCOG00000015633	usb1	100	70.111	Hippocampus_comes
ENSACIG00000012234	usb1	99	54.514	ENSIPUG00000008601	usb1	100	54.514	Ictalurus_punctatus
ENSACIG00000012234	usb1	86	52.340	ENSSTOG00000007548	USB1	86	52.340	Ictidomys_tridecemlineatus
ENSACIG00000012234	usb1	99	52.030	ENSJJAG00000021859	Usb1	85	55.310	Jaculus_jaculus
ENSACIG00000012234	usb1	87	76.695	ENSKMAG00000007200	usb1	83	76.371	Kryptolebias_marmoratus
ENSACIG00000012234	usb1	80	75.115	ENSLBEG00000008452	usb1	68	75.115	Labrus_bergylta
ENSACIG00000012234	usb1	82	53.333	ENSLACG00000000105	USB1	78	54.222	Latimeria_chalumnae
ENSACIG00000012234	usb1	82	57.589	ENSLOCG00000000465	usb1	79	57.589	Lepisosteus_oculatus
ENSACIG00000012234	usb1	99	42.806	ENSLAFG00000002267	USB1	84	44.017	Loxodonta_africana
ENSACIG00000012234	usb1	82	54.018	ENSMFAG00000003926	USB1	85	54.018	Macaca_fascicularis
ENSACIG00000012234	usb1	82	54.018	ENSMMUG00000022669	USB1	85	54.018	Macaca_mulatta
ENSACIG00000012234	usb1	82	53.571	ENSMNEG00000042487	USB1	85	53.571	Macaca_nemestrina
ENSACIG00000012234	usb1	82	54.018	ENSMLEG00000028756	USB1	85	54.018	Mandrillus_leucophaeus
ENSACIG00000012234	usb1	99	69.474	ENSMAMG00000015092	usb1	80	81.166	Mastacembelus_armatus
ENSACIG00000012234	usb1	83	86.161	ENSMZEG00005010008	usb1	80	86.161	Maylandia_zebra
ENSACIG00000012234	usb1	99	51.481	ENSMAUG00000007832	Usb1	84	55.357	Mesocricetus_auratus
ENSACIG00000012234	usb1	83	54.425	ENSMICG00000004900	USB1	85	54.425	Microcebus_murinus
ENSACIG00000012234	usb1	99	51.481	ENSMOCG00000022647	Usb1	84	55.804	Microtus_ochrogaster
ENSACIG00000012234	usb1	86	75.862	ENSMMOG00000000490	usb1	90	75.862	Mola_mola
ENSACIG00000012234	usb1	79	53.271	ENSMODG00000014067	USB1	86	51.948	Monodelphis_domestica
ENSACIG00000012234	usb1	87	77.215	ENSMALG00000005930	usb1	84	77.215	Monopterus_albus
ENSACIG00000012234	usb1	99	52.593	MGP_CAROLIEiJ_G0031421	Usb1	99	50.893	Mus_caroli
ENSACIG00000012234	usb1	99	52.593	ENSMUSG00000031792	Usb1	99	50.893	Mus_musculus
ENSACIG00000012234	usb1	99	51.111	MGP_PahariEiJ_G0023019	Usb1	100	52.991	Mus_pahari
ENSACIG00000012234	usb1	99	52.963	MGP_SPRETEiJ_G0032540	Usb1	85	55.310	Mus_spretus
ENSACIG00000012234	usb1	99	50.923	ENSMPUG00000004684	USB1	84	52.766	Mustela_putorius_furo
ENSACIG00000012234	usb1	83	55.310	ENSMLUG00000007400	USB1	98	55.310	Myotis_lucifugus
ENSACIG00000012234	usb1	83	55.310	ENSNGAG00000009703	Usb1	84	55.310	Nannospalax_galili
ENSACIG00000012234	usb1	86	76.395	ENSNBRG00000008747	usb1	100	83.178	Neolamprologus_brichardi
ENSACIG00000012234	usb1	77	53.589	ENSNLEG00000003340	USB1	84	53.589	Nomascus_leucogenys
ENSACIG00000012234	usb1	57	41.290	ENSMEUG00000003328	-	97	41.290	Notamacropus_eugenii
ENSACIG00000012234	usb1	99	51.301	ENSODEG00000016214	USB1	83	55.157	Octodon_degus
ENSACIG00000012234	usb1	99	76.596	ENSONIG00000011063	usb1	85	84.322	Oreochromis_niloticus
ENSACIG00000012234	usb1	82	54.667	ENSOANG00000012118	USB1	94	54.667	Ornithorhynchus_anatinus
ENSACIG00000012234	usb1	90	73.770	ENSORLG00000012479	usb1	88	73.770	Oryzias_latipes
ENSACIG00000012234	usb1	90	72.541	ENSORLG00020018671	usb1	88	72.541	Oryzias_latipes_hni
ENSACIG00000012234	usb1	90	74.074	ENSORLG00015009679	usb1	88	74.074	Oryzias_latipes_hsok
ENSACIG00000012234	usb1	84	77.974	ENSOMEG00000012930	usb1	82	77.974	Oryzias_melastigma
ENSACIG00000012234	usb1	87	49.153	ENSOGAG00000003273	USB1	88	49.153	Otolemur_garnettii
ENSACIG00000012234	usb1	82	54.018	ENSOARG00000001107	USB1	86	54.018	Ovis_aries
ENSACIG00000012234	usb1	82	53.125	ENSPPAG00000042137	USB1	85	53.125	Pan_paniscus
ENSACIG00000012234	usb1	83	53.540	ENSPPRG00000024797	USB1	85	53.540	Panthera_pardus
ENSACIG00000012234	usb1	83	53.097	ENSPTIG00000007506	USB1	85	53.097	Panthera_tigris_altaica
ENSACIG00000012234	usb1	79	54.673	ENSPTRG00000008172	USB1	100	54.673	Pan_troglodytes
ENSACIG00000012234	usb1	82	54.018	ENSPANG00000025138	USB1	85	54.018	Papio_anubis
ENSACIG00000012234	usb1	82	62.332	ENSPKIG00000015109	usb1	75	62.332	Paramormyrops_kingsleyae
ENSACIG00000012234	usb1	82	45.778	ENSPSIG00000004305	USB1	100	45.778	Pelodiscus_sinensis
ENSACIG00000012234	usb1	83	69.643	ENSPMGG00000017725	usb1	86	69.643	Periophthalmus_magnuspinnatus
ENSACIG00000012234	usb1	99	50.741	ENSPEMG00000016183	Usb1	98	50.741	Peromyscus_maniculatus_bairdii
ENSACIG00000012234	usb1	85	51.724	ENSPMAG00000000462	usb1	98	51.724	Petromyzon_marinus
ENSACIG00000012234	usb1	100	67.986	ENSPFOG00000011130	usb1	85	73.109	Poecilia_formosa
ENSACIG00000012234	usb1	100	67.266	ENSPLAG00000009820	usb1	85	72.269	Poecilia_latipinna
ENSACIG00000012234	usb1	100	67.986	ENSPMEG00000006402	usb1	85	73.109	Poecilia_mexicana
ENSACIG00000012234	usb1	88	65.714	ENSPREG00000001047	usb1	83	71.220	Poecilia_reticulata
ENSACIG00000012234	usb1	77	50.237	ENSPPYG00000007401	USB1	84	50.237	Pongo_abelii
ENSACIG00000012234	usb1	83	53.540	ENSPCOG00000022612	USB1	85	53.540	Propithecus_coquereli
ENSACIG00000012234	usb1	99	47.619	ENSPVAG00000004613	USB1	88	51.754	Pteropus_vampyrus
ENSACIG00000012234	usb1	87	83.544	ENSPNYG00000022262	usb1	84	83.544	Pundamilia_nyererei
ENSACIG00000012234	usb1	86	62.869	ENSPNAG00000011736	usb1	81	62.869	Pygocentrus_nattereri
ENSACIG00000012234	usb1	99	52.963	ENSRNOG00000013216	Usb1	85	55.310	Rattus_norvegicus
ENSACIG00000012234	usb1	79	55.140	ENSRBIG00000044466	USB1	100	55.140	Rhinopithecus_bieti
ENSACIG00000012234	usb1	82	54.018	ENSRROG00000029211	USB1	85	54.018	Rhinopithecus_roxellana
ENSACIG00000012234	usb1	82	54.018	ENSSBOG00000029362	USB1	85	54.018	Saimiri_boliviensis_boliviensis
ENSACIG00000012234	usb1	79	51.869	ENSSHAG00000006993	USB1	91	51.082	Sarcophilus_harrisii
ENSACIG00000012234	usb1	83	68.444	ENSSFOG00015023663	usb1	71	68.444	Scleropages_formosus
ENSACIG00000012234	usb1	83	76.050	ENSSMAG00000015834	usb1	81	76.050	Scophthalmus_maximus
ENSACIG00000012234	usb1	88	76.518	ENSSDUG00000002949	usb1	100	73.477	Seriola_dumerili
ENSACIG00000012234	usb1	100	73.214	ENSSLDG00000014174	usb1	100	71.678	Seriola_lalandi_dorsalis
ENSACIG00000012234	usb1	79	53.271	ENSSPUG00000006741	USB1	100	53.271	Sphenodon_punctatus
ENSACIG00000012234	usb1	99	70.423	ENSSPAG00000007484	usb1	99	70.423	Stegastes_partitus
ENSACIG00000012234	usb1	99	50.923	ENSSSCG00000002807	USB1	84	54.185	Sus_scrofa
ENSACIG00000012234	usb1	99	48.905	ENSTGUG00000004792	USB1	98	48.905	Taeniopygia_guttata
ENSACIG00000012234	usb1	99	69.004	ENSTRUG00000021069	usb1	83	76.233	Takifugu_rubripes
ENSACIG00000012234	usb1	99	61.852	ENSTNIG00000000626	usb1	85	66.814	Tetraodon_nigroviridis
ENSACIG00000012234	usb1	84	36.842	ENSTBEG00000001507	USB1	98	36.842	Tupaia_belangeri
ENSACIG00000012234	usb1	83	55.752	ENSUAMG00000016823	USB1	84	55.752	Ursus_americanus
ENSACIG00000012234	usb1	79	56.542	ENSUMAG00000021369	USB1	100	56.542	Ursus_maritimus
ENSACIG00000012234	usb1	99	49.442	ENSVVUG00000023700	USB1	87	54.667	Vulpes_vulpes
ENSACIG00000012234	usb1	78	57.009	ENSXETG00000013795	usb1	89	56.054	Xenopus_tropicalis
ENSACIG00000012234	usb1	87	71.849	ENSXMAG00000024687	usb1	70	71.849	Xiphophorus_maculatus