EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACIG00000012502 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: -
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 13641 bases
Position: chrCCOE01001335.1:1417694-1431334
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000016159	RRM_1	PF00076.22	7e-17	1	1
ENSACIP00000016227	RRM_1	PF00076.22	2.6e-16	1	1
ENSACIP00000016200	RRM_1	PF00076.22	2.8e-16	1	1
ENSACIP00000016180	RRM_1	PF00076.22	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000016610	-	720	-	ENSACIP00000016180	239 (aa)	-	-
ENSACIT00000016630	-	735	-	ENSACIP00000016200	244 (aa)	-	-
ENSACIT00000016659	-	696	-	ENSACIP00000016227	231 (aa)	-	-
ENSACIT00000016586	-	354	-	ENSACIP00000016159	117 (aa)	-	-

Gene Model

Click here to download ENSACIG00000012502's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000012502's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACIG00000012502	-	66	40.000	ENSACIG00000021834	HNRNPA0	71	39.535
ENSACIG00000012502	-	64	40.678	ENSACIG00000020389	HNRNPA1P48	57	45.283
ENSACIG00000012502	-	74	39.706	ENSACIG00000012946	hnrnpa1b	50	47.458
ENSACIG00000012502	-	100	81.197	ENSACIG00000010987	rbm24a	100	62.553
ENSACIG00000012502	-	83	30.612	ENSACIG00000001333	tra2a	52	30.612
ENSACIG00000012502	-	89	39.216	ENSACIG00000008353	hnrnpd	51	33.684
ENSACIG00000012502	-	61	30.986	ENSACIG00000018210	zgc:110796	78	30.986
ENSACIG00000012502	-	100	76.923	ENSACIG00000015650	rbm24b	100	60.084
ENSACIG00000012502	-	68	41.333	ENSACIG00000021815	-	75	41.333
ENSACIG00000012502	-	74	34.483	ENSACIG00000018502	srsf2a	51	34.483
ENSACIG00000012502	-	97	30.952	ENSACIG00000012959	-	50	36.765
ENSACIG00000012502	-	100	82.906	ENSACIG00000000010	rbm38	98	63.889
ENSACIG00000012502	-	69	33.333	ENSACIG00000023163	-	91	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000012502	-	100	88.889	ENSG00000132819	RBM38	94	88.889	Homo_sapiens
ENSACIG00000012502	-	100	84.615	ENSAPOG00000003301	rbm38	98	64.940	Acanthochromis_polyacanthus
ENSACIG00000012502	-	100	97.458	ENSAPOG00000009939	-	100	93.852	Acanthochromis_polyacanthus
ENSACIG00000012502	-	100	84.615	ENSAOCG00000013497	-	98	64.940	Amphiprion_ocellaris
ENSACIG00000012502	-	100	97.458	ENSAOCG00000012559	RBM38	100	92.827	Amphiprion_ocellaris
ENSACIG00000012502	-	100	84.615	ENSAPEG00000013137	rbm38	98	64.940	Amphiprion_percula
ENSACIG00000012502	-	100	97.458	ENSAPEG00000023581	-	100	92.623	Amphiprion_percula
ENSACIG00000012502	-	100	83.761	ENSATEG00000016366	rbm38	97	64.502	Anabas_testudineus
ENSACIG00000012502	-	100	96.610	ENSATEG00000016710	-	100	94.672	Anabas_testudineus
ENSACIG00000012502	-	100	84.615	ENSACAG00000016238	RBM38	95	66.094	Anolis_carolinensis
ENSACIG00000012502	-	100	88.889	ENSANAG00000031959	RBM38	81	92.929	Aotus_nancymaae
ENSACIG00000012502	-	100	97.541	ENSACLG00000019514	-	100	97.541	Astatotilapia_calliptera
ENSACIG00000012502	-	93	83.486	ENSAMXG00000038120	rbm38	97	65.385	Astyanax_mexicanus
ENSACIG00000012502	-	100	94.068	ENSAMXG00000015601	-	100	77.869	Astyanax_mexicanus
ENSACIG00000012502	-	100	87.179	ENSBTAG00000008105	RBM38	89	68.664	Bos_taurus
ENSACIG00000012502	-	76	83.146	WBGene00006321	sup-12	59	83.146	Caenorhabditis_elegans
ENSACIG00000012502	-	100	89.744	ENSCJAG00000019139	RBM38	81	92.929	Callithrix_jacchus
ENSACIG00000012502	-	100	88.034	ENSCAFG00020021943	RBM38	89	70.642	Canis_lupus_dingo
ENSACIG00000012502	-	100	86.325	ENSCHIG00000002609	RBM38	89	68.807	Capra_hircus
ENSACIG00000012502	-	100	88.034	ENSCPOG00000012781	RBM38	89	69.266	Cavia_porcellus
ENSACIG00000012502	-	100	89.744	ENSCCAG00000036872	RBM38	81	92.929	Cebus_capucinus
ENSACIG00000012502	-	100	88.889	ENSCATG00000032133	RBM38	81	92.929	Cercocebus_atys
ENSACIG00000012502	-	100	88.034	ENSCLAG00000005906	RBM38	92	68.349	Chinchilla_lanigera
ENSACIG00000012502	-	100	88.889	ENSCSAG00000015503	RBM38	89	69.585	Chlorocebus_sabaeus
ENSACIG00000012502	-	100	87.179	ENSCPBG00000024059	RBM38	100	69.196	Chrysemys_picta_bellii
ENSACIG00000012502	-	96	76.991	ENSCING00000025102	-	66	61.538	Ciona_intestinalis
ENSACIG00000012502	-	96	75.439	ENSCSAVG00000001132	-	57	62.338	Ciona_savignyi
ENSACIG00000012502	-	96	66.964	ENSCANG00000030105	-	80	51.351	Colobus_angolensis_palliatus
ENSACIG00000012502	-	100	87.179	ENSCGRG00001012928	Rbm38	93	64.629	Cricetulus_griseus_chok1gshd
ENSACIG00000012502	-	100	75.214	ENSCSEG00000020943	rbm38	63	64.583	Cynoglossus_semilaevis
ENSACIG00000012502	-	100	94.068	ENSCSEG00000004701	-	100	90.164	Cynoglossus_semilaevis
ENSACIG00000012502	-	100	80.342	ENSCVAG00000015952	rbm38	98	61.660	Cyprinodon_variegatus
ENSACIG00000012502	-	100	91.200	ENSCVAG00000005472	-	100	89.344	Cyprinodon_variegatus
ENSACIG00000012502	-	100	87.179	ENSDARG00000058818	rbm38	100	70.782	Danio_rerio
ENSACIG00000012502	-	100	87.179	ENSDNOG00000032004	RBM38	98	68.372	Dasypus_novemcinctus
ENSACIG00000012502	-	85	84.848	ENSEBUG00000015164	rbm38	62	83.333	Eptatretus_burgeri
ENSACIG00000012502	-	100	86.325	ENSECAG00000007700	RBM38	89	69.266	Equus_caballus
ENSACIG00000012502	-	100	87.179	ENSEEUG00000013489	RBM38	89	68.950	Erinaceus_europaeus
ENSACIG00000012502	-	100	88.889	ENSELUG00000000585	-	98	64.000	Esox_lucius
ENSACIG00000012502	-	100	91.870	ENSELUG00000005849	-	100	80.723	Esox_lucius
ENSACIG00000012502	-	100	88.034	ENSFCAG00000042916	RBM38	81	91.919	Felis_catus
ENSACIG00000012502	-	100	86.325	ENSFALG00000010805	RBM38	92	73.184	Ficedula_albicollis
ENSACIG00000012502	-	100	90.400	ENSFHEG00000006160	-	100	84.848	Fundulus_heteroclitus
ENSACIG00000012502	-	100	80.342	ENSFHEG00000017748	rbm38	98	61.753	Fundulus_heteroclitus
ENSACIG00000012502	-	100	94.872	ENSGMOG00000016655	-	98	85.870	Gadus_morhua
ENSACIG00000012502	-	100	86.325	ENSGALG00000026081	RBM38	100	68.778	Gallus_gallus
ENSACIG00000012502	-	100	83.761	ENSGACG00000015224	rbm38	100	68.950	Gasterosteus_aculeatus
ENSACIG00000012502	-	100	93.220	ENSGACG00000009873	-	100	89.862	Gasterosteus_aculeatus
ENSACIG00000012502	-	100	87.179	ENSGAGG00000001187	RBM38	100	69.196	Gopherus_agassizii
ENSACIG00000012502	-	100	97.835	ENSHBUG00000011778	-	100	97.835	Haplochromis_burtoni
ENSACIG00000012502	-	100	83.761	ENSHBUG00000012058	rbm38	98	63.241	Haplochromis_burtoni
ENSACIG00000012502	-	100	88.034	ENSHGLG00000015077	RBM38	89	69.406	Heterocephalus_glaber_female
ENSACIG00000012502	-	98	73.043	ENSHCOG00000019040	rbm38	78	56.633	Hippocampus_comes
ENSACIG00000012502	-	97	97.368	ENSHCOG00000005622	-	59	91.667	Hippocampus_comes
ENSACIG00000012502	-	100	91.525	ENSIPUG00000019349	-	100	72.951	Ictalurus_punctatus
ENSACIG00000012502	-	91	78.302	ENSKMAG00000012402	rbm38	98	60.515	Kryptolebias_marmoratus
ENSACIG00000012502	-	100	84.615	ENSLBEG00000018878	rbm38	98	64.683	Labrus_bergylta
ENSACIG00000012502	-	100	98.305	ENSLBEG00000016163	RBM38	100	94.372	Labrus_bergylta
ENSACIG00000012502	-	100	89.744	ENSLOCG00000003456	rbm38	100	77.872	Lepisosteus_oculatus
ENSACIG00000012502	-	100	88.889	ENSMFAG00000043808	RBM38	81	92.929	Macaca_fascicularis
ENSACIG00000012502	-	100	88.889	ENSMMUG00000031391	RBM38	81	92.929	Macaca_mulatta
ENSACIG00000012502	-	100	88.889	ENSMNEG00000034683	RBM38	81	92.929	Macaca_nemestrina
ENSACIG00000012502	-	95	73.874	ENSMLEG00000043261	-	90	73.874	Mandrillus_leucophaeus
ENSACIG00000012502	-	100	97.458	ENSMAMG00000020499	RBM38	100	93.033	Mastacembelus_armatus
ENSACIG00000012502	-	100	83.761	ENSMAMG00000024135	rbm38	98	65.737	Mastacembelus_armatus
ENSACIG00000012502	-	100	83.761	ENSMZEG00005026036	rbm38	98	63.241	Maylandia_zebra
ENSACIG00000012502	-	100	97.835	ENSMZEG00005000849	-	100	97.835	Maylandia_zebra
ENSACIG00000012502	-	100	88.034	ENSMAUG00000021211	Rbm38	93	65.939	Mesocricetus_auratus
ENSACIG00000012502	-	100	88.889	ENSMICG00000038011	RBM38	98	70.776	Microcebus_murinus
ENSACIG00000012502	-	100	87.179	ENSMOCG00000008715	Rbm38	94	65.217	Microtus_ochrogaster
ENSACIG00000012502	-	100	97.458	ENSMMOG00000020051	-	100	94.672	Mola_mola
ENSACIG00000012502	-	100	87.179	ENSMODG00000016458	RBM38	92	67.556	Monodelphis_domestica
ENSACIG00000012502	-	97	80.531	ENSMALG00000022327	rbm38	72	72.619	Monopterus_albus
ENSACIG00000012502	-	100	98.305	ENSMALG00000004680	RBM38	72	97.884	Monopterus_albus
ENSACIG00000012502	-	100	87.179	MGP_CAROLIEiJ_G0024745	Rbm38	94	66.087	Mus_caroli
ENSACIG00000012502	-	100	87.179	ENSMUSG00000027510	Rbm38	94	66.087	Mus_musculus
ENSACIG00000012502	-	100	87.179	MGP_PahariEiJ_G0026186	Rbm38	94	66.087	Mus_pahari
ENSACIG00000012502	-	100	87.179	MGP_SPRETEiJ_G0025665	Rbm38	94	66.087	Mus_spretus
ENSACIG00000012502	-	100	88.034	ENSMPUG00000006518	RBM38	92	73.936	Mustela_putorius_furo
ENSACIG00000012502	-	100	86.325	ENSMLUG00000011140	RBM38	98	68.807	Myotis_lucifugus
ENSACIG00000012502	-	100	84.615	ENSNBRG00000022685	rbm38	98	64.032	Neolamprologus_brichardi
ENSACIG00000012502	-	100	97.951	ENSNBRG00000022545	-	100	97.951	Neolamprologus_brichardi
ENSACIG00000012502	-	99	80.172	ENSMEUG00000005475	-	86	80.172	Notamacropus_eugenii
ENSACIG00000012502	-	100	88.034	ENSODEG00000007980	RBM38	89	68.807	Octodon_degus
ENSACIG00000012502	-	99	97.942	ENSONIG00000020324	-	100	97.942	Oreochromis_niloticus
ENSACIG00000012502	-	100	83.761	ENSONIG00000017073	rbm38	100	63.492	Oreochromis_niloticus
ENSACIG00000012502	-	100	85.470	ENSOANG00000009259	RBM38	83	68.778	Ornithorhynchus_anatinus
ENSACIG00000012502	-	100	96.610	ENSORLG00000027180	-	100	90.650	Oryzias_latipes
ENSACIG00000012502	-	100	80.342	ENSORLG00000012154	rbm38	98	59.289	Oryzias_latipes
ENSACIG00000012502	-	100	81.197	ENSORLG00020017871	rbm38	98	58.730	Oryzias_latipes_hni
ENSACIG00000012502	-	100	96.610	ENSORLG00020020751	-	100	90.650	Oryzias_latipes_hni
ENSACIG00000012502	-	100	81.197	ENSORLG00015012606	rbm38	98	58.730	Oryzias_latipes_hsok
ENSACIG00000012502	-	100	96.610	ENSORLG00015017040	-	100	91.429	Oryzias_latipes_hsok
ENSACIG00000012502	-	100	96.610	ENSOMEG00000023912	-	100	91.393	Oryzias_melastigma
ENSACIG00000012502	-	100	82.051	ENSOMEG00000006805	rbm38	98	59.921	Oryzias_melastigma
ENSACIG00000012502	-	100	88.889	ENSOGAG00000029136	RBM38	88	69.725	Otolemur_garnettii
ENSACIG00000012502	-	100	88.034	ENSPPRG00000009507	RBM38	81	91.919	Panthera_pardus
ENSACIG00000012502	-	100	88.889	ENSPTRG00000045845	-	66	87.500	Pan_troglodytes
ENSACIG00000012502	-	100	88.889	ENSPTRG00000013661	RBM38	81	92.929	Pan_troglodytes
ENSACIG00000012502	-	92	71.296	ENSPANG00000033127	-	91	55.760	Papio_anubis
ENSACIG00000012502	-	100	88.889	ENSPANG00000020919	-	81	92.929	Papio_anubis
ENSACIG00000012502	-	100	88.889	ENSPKIG00000018122	-	100	88.889	Paramormyrops_kingsleyae
ENSACIG00000012502	-	100	85.246	ENSPKIG00000025417	rbm38	100	70.492	Paramormyrops_kingsleyae
ENSACIG00000012502	-	100	86.325	ENSPSIG00000011649	RBM38	94	67.982	Pelodiscus_sinensis
ENSACIG00000012502	-	100	85.484	ENSPMGG00000017094	-	100	87.097	Periophthalmus_magnuspinnatus
ENSACIG00000012502	-	100	84.615	ENSPMGG00000011343	rbm38	98	62.400	Periophthalmus_magnuspinnatus
ENSACIG00000012502	-	100	87.179	ENSPCIG00000013648	RBM38	92	67.568	Phascolarctos_cinereus
ENSACIG00000012502	-	100	81.197	ENSPFOG00000011658	rbm38	98	61.024	Poecilia_formosa
ENSACIG00000012502	-	100	91.200	ENSPLAG00000002500	-	100	88.211	Poecilia_latipinna
ENSACIG00000012502	-	100	81.197	ENSPLAG00000005218	rbm38	98	61.024	Poecilia_latipinna
ENSACIG00000012502	-	100	81.197	ENSPMEG00000015770	rbm38	98	61.024	Poecilia_mexicana
ENSACIG00000012502	-	100	81.197	ENSPREG00000007398	rbm38	98	61.024	Poecilia_reticulata
ENSACIG00000012502	-	100	88.034	ENSPCOG00000026201	RBM38	80	92.929	Propithecus_coquereli
ENSACIG00000012502	-	68	85.484	ENSPVAG00000006457	RBM38	66	85.484	Pteropus_vampyrus
ENSACIG00000012502	-	100	99.145	ENSPNYG00000019727	-	100	99.145	Pundamilia_nyererei
ENSACIG00000012502	-	100	82.906	ENSPNYG00000021373	rbm38	98	62.846	Pundamilia_nyererei
ENSACIG00000012502	-	95	91.892	ENSPNAG00000010596	rbm38	97	71.064	Pygocentrus_nattereri
ENSACIG00000012502	-	100	92.373	ENSPNAG00000015123	-	91	92.308	Pygocentrus_nattereri
ENSACIG00000012502	-	100	87.179	ENSRNOG00000006420	Rbm38	94	67.532	Rattus_norvegicus
ENSACIG00000012502	-	96	76.786	ENSRROG00000036388	-	90	55.405	Rhinopithecus_roxellana
ENSACIG00000012502	-	100	89.744	ENSSBOG00000031053	RBM38	92	92.929	Saimiri_boliviensis_boliviensis
ENSACIG00000012502	-	96	90.179	ENSSFOG00015004453	rbm38	100	73.790	Scleropages_formosus
ENSACIG00000012502	-	100	84.615	ENSSDUG00000022611	rbm38	98	66.275	Seriola_dumerili
ENSACIG00000012502	-	100	97.458	ENSSDUG00000021082	RBM38	100	94.262	Seriola_dumerili
ENSACIG00000012502	-	100	97.458	ENSSLDG00000011778	RBM38	100	95.082	Seriola_lalandi_dorsalis
ENSACIG00000012502	-	100	84.615	ENSSLDG00000010845	rbm38	98	66.275	Seriola_lalandi_dorsalis
ENSACIG00000012502	-	100	84.615	ENSSPAG00000011113	rbm38	98	64.286	Stegastes_partitus
ENSACIG00000012502	-	100	96.610	ENSSPAG00000020989	RBM38	100	93.443	Stegastes_partitus
ENSACIG00000012502	-	100	88.034	ENSSSCG00000007504	RBM38	89	68.664	Sus_scrofa
ENSACIG00000012502	-	100	84.615	ENSTRUG00000024954	rbm38	94	64.583	Takifugu_rubripes
ENSACIG00000012502	-	100	95.763	ENSTRUG00000019869	-	100	89.796	Takifugu_rubripes
ENSACIG00000012502	-	100	95.763	ENSTNIG00000007093	-	100	88.688	Tetraodon_nigroviridis
ENSACIG00000012502	-	100	88.034	ENSUAMG00000019780	RBM38	89	70.320	Ursus_americanus
ENSACIG00000012502	-	100	88.034	ENSVVUG00000017246	RBM38	89	70.642	Vulpes_vulpes
ENSACIG00000012502	-	100	84.615	ENSXETG00000011268	rbm38	99	65.333	Xenopus_tropicalis
ENSACIG00000012502	-	100	87.692	ENSXCOG00000017324	-	73	79.769	Xiphophorus_couchianus
ENSACIG00000012502	-	100	81.197	ENSXMAG00000023662	rbm38	98	62.550	Xiphophorus_maculatus