EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACIG00000012997 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Amphilophus_citrinellus
Status: putative
Strand: Plus strand
Length: 15167 bases
Position: chrCCOE01001726.1:432996-448162
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACIP00000016724	EST1	PF10374.9	6.7e-13	1	1
ENSACIP00000016724	EST1_DNA_bind	PF10373.9	2.4e-56	1	1
ENSACIP00000016724	PIN_4	PF13638.6	5.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACIT00000017175	-	4392	-	ENSACIP00000016724	1463 (aa)	-	-

Gene Model

Click here to download ENSACIG00000012997's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACIG00000012997's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACIG00000012997	smg6	78	55.413	ENSG00000070366	SMG6	100	60.526	Homo_sapiens
ENSACIG00000012997	smg6	100	78.798	ENSAPOG00000019448	smg6	93	79.250	Acanthochromis_polyacanthus
ENSACIG00000012997	smg6	78	55.299	ENSAMEG00000007632	SMG6	72	60.536	Ailuropoda_melanoleuca
ENSACIG00000012997	smg6	100	79.832	ENSAOCG00000002630	smg6	93	80.284	Amphiprion_ocellaris
ENSACIG00000012997	smg6	100	79.703	ENSAPEG00000019101	smg6	93	80.155	Amphiprion_percula
ENSACIG00000012997	smg6	100	74.662	ENSATEG00000006483	smg6	93	74.791	Anabas_testudineus
ENSACIG00000012997	smg6	67	49.856	ENSACAG00000011783	SMG6	82	50.288	Anolis_carolinensis
ENSACIG00000012997	smg6	98	49.607	ENSANAG00000035760	SMG6	98	49.573	Aotus_nancymaae
ENSACIG00000012997	smg6	100	85.176	ENSACLG00000005288	smg6	100	85.566	Astatotilapia_calliptera
ENSACIG00000012997	smg6	70	70.097	ENSAMXG00000017326	smg6	83	70.000	Astyanax_mexicanus
ENSACIG00000012997	smg6	98	50.263	ENSCJAG00000001820	SMG6	98	49.802	Callithrix_jacchus
ENSACIG00000012997	smg6	98	49.605	ENSTSYG00000003406	SMG6	100	59.774	Carlito_syrichta
ENSACIG00000012997	smg6	98	42.091	ENSCAPG00000016197	SMG6	67	55.476	Cavia_aperea
ENSACIG00000012997	smg6	98	49.241	ENSCPOG00000014878	SMG6	91	60.360	Cavia_porcellus
ENSACIG00000012997	smg6	98	49.115	ENSCATG00000031956	SMG6	98	48.914	Cercocebus_atys
ENSACIG00000012997	smg6	98	49.636	ENSCLAG00000006748	SMG6	91	58.333	Chinchilla_lanigera
ENSACIG00000012997	smg6	71	60.166	ENSCPBG00000020369	SMG6	72	59.963	Chrysemys_picta_bellii
ENSACIG00000012997	smg6	97	49.868	ENSCANG00000031764	SMG6	100	60.714	Colobus_angolensis_palliatus
ENSACIG00000012997	smg6	98	45.364	ENSCGRG00000007782	Smg6	74	54.945	Cricetulus_griseus_crigri
ENSACIG00000012997	smg6	99	68.504	ENSCSEG00000012757	smg6	97	68.963	Cynoglossus_semilaevis
ENSACIG00000012997	smg6	100	68.544	ENSCVAG00000012789	smg6	93	68.155	Cyprinodon_variegatus
ENSACIG00000012997	smg6	99	58.556	ENSDARG00000100481	smg6	92	58.517	Danio_rerio
ENSACIG00000012997	smg6	78	55.048	ENSDNOG00000048283	SMG6	98	49.473	Dasypus_novemcinctus
ENSACIG00000012997	smg6	78	51.479	ENSDORG00000016614	Smg6	84	62.927	Dipodomys_ordii
ENSACIG00000012997	smg6	66	89.744	ENSETEG00000016790	SMG6	61	89.744	Echinops_telfairi
ENSACIG00000012997	smg6	65	47.530	ENSEBUG00000005059	smg6	63	47.530	Eptatretus_burgeri
ENSACIG00000012997	smg6	78	55.316	ENSEASG00005009318	SMG6	71	60.129	Equus_asinus_asinus
ENSACIG00000012997	smg6	78	55.316	ENSECAG00000006519	SMG6	71	60.129	Equus_caballus
ENSACIG00000012997	smg6	71	51.289	ENSEEUG00000003493	SMG6	72	51.244	Erinaceus_europaeus
ENSACIG00000012997	smg6	89	74.625	ENSELUG00000005934	smg6	89	58.445	Esox_lucius
ENSACIG00000012997	smg6	83	54.157	ENSFALG00000006538	SMG6	74	59.381	Ficedula_albicollis
ENSACIG00000012997	smg6	98	49.182	ENSFDAG00000015106	SMG6	84	61.951	Fukomys_damarensis
ENSACIG00000012997	smg6	100	68.851	ENSFHEG00000013282	smg6	93	68.981	Fundulus_heteroclitus
ENSACIG00000012997	smg6	50	78.947	ENSGMOG00000019077	smg6	58	78.947	Gadus_morhua
ENSACIG00000012997	smg6	91	51.697	ENSGALG00000003108	SMG6	96	48.787	Gallus_gallus
ENSACIG00000012997	smg6	100	69.974	ENSGAFG00000000379	smg6	93	69.825	Gambusia_affinis
ENSACIG00000012997	smg6	88	80.000	ENSGACG00000020521	smg6	100	80.000	Gasterosteus_aculeatus
ENSACIG00000012997	smg6	78	55.413	ENSGGOG00000017156	SMG6	74	59.586	Gorilla_gorilla
ENSACIG00000012997	smg6	100	84.460	ENSHBUG00000021311	smg6	93	85.176	Haplochromis_burtoni
ENSACIG00000012997	smg6	98	49.544	ENSHGLG00000012882	SMG6	91	59.292	Heterocephalus_glaber_female
ENSACIG00000012997	smg6	98	49.609	ENSHGLG00100017815	SMG6	91	59.292	Heterocephalus_glaber_male
ENSACIG00000012997	smg6	71	70.880	ENSHCOG00000008761	smg6	84	71.147	Hippocampus_comes
ENSACIG00000012997	smg6	99	55.671	ENSIPUG00000012493	smg6	93	54.324	Ictalurus_punctatus
ENSACIG00000012997	smg6	98	49.412	ENSSTOG00000028127	SMG6	84	62.802	Ictidomys_tridecemlineatus
ENSACIG00000012997	smg6	77	45.721	ENSJJAG00000015367	Smg6	63	56.281	Jaculus_jaculus
ENSACIG00000012997	smg6	100	71.982	ENSKMAG00000000279	smg6	93	71.788	Kryptolebias_marmoratus
ENSACIG00000012997	smg6	100	74.356	ENSLBEG00000002184	smg6	93	74.742	Labrus_bergylta
ENSACIG00000012997	smg6	72	65.489	ENSLOCG00000006448	smg6	76	66.636	Lepisosteus_oculatus
ENSACIG00000012997	smg6	78	53.735	ENSMNEG00000044592	SMG6	72	57.562	Macaca_nemestrina
ENSACIG00000012997	smg6	100	76.034	ENSMAMG00000020119	smg6	100	76.680	Mastacembelus_armatus
ENSACIG00000012997	smg6	100	85.101	ENSMZEG00005024736	smg6	93	85.231	Maylandia_zebra
ENSACIG00000012997	smg6	100	71.971	ENSMMOG00000010883	smg6	93	71.771	Mola_mola
ENSACIG00000012997	smg6	100	76.015	ENSMALG00000001106	smg6	93	76.144	Monopterus_albus
ENSACIG00000012997	smg6	98	49.408	MGP_SPRETEiJ_G0017572	Smg6	96	64.789	Mus_spretus
ENSACIG00000012997	smg6	78	55.680	ENSMPUG00000013046	SMG6	72	60.386	Mustela_putorius_furo
ENSACIG00000012997	smg6	79	55.467	ENSMLUG00000005739	SMG6	76	58.457	Myotis_lucifugus
ENSACIG00000012997	smg6	72	44.822	ENSNGAG00000007287	Smg6	91	58.150	Nannospalax_galili
ENSACIG00000012997	smg6	100	84.584	ENSNBRG00000009511	smg6	99	84.973	Neolamprologus_brichardi
ENSACIG00000012997	smg6	97	49.605	ENSNLEG00000017171	SMG6	100	60.526	Nomascus_leucogenys
ENSACIG00000012997	smg6	78	54.779	ENSMEUG00000015804	SMG6	77	57.419	Notamacropus_eugenii
ENSACIG00000012997	smg6	56	64.865	ENSOPRG00000000579	SMG6	87	51.770	Ochotona_princeps
ENSACIG00000012997	smg6	100	85.185	ENSONIG00000005594	smg6	93	85.835	Oreochromis_niloticus
ENSACIG00000012997	smg6	98	49.476	ENSOCUG00000013018	SMG6	98	49.509	Oryctolagus_cuniculus
ENSACIG00000012997	smg6	100	68.041	ENSORLG00000003317	smg6	93	68.581	Oryzias_latipes
ENSACIG00000012997	smg6	100	68.475	ENSORLG00020015343	smg6	93	68.887	Oryzias_latipes_hni
ENSACIG00000012997	smg6	100	68.407	ENSORLG00015020454	smg6	93	68.689	Oryzias_latipes_hsok
ENSACIG00000012997	smg6	100	67.313	ENSOMEG00000010838	smg6	93	67.547	Oryzias_melastigma
ENSACIG00000012997	smg6	98	50.000	ENSOGAG00000004483	SMG6	72	60.681	Otolemur_garnettii
ENSACIG00000012997	smg6	71	61.183	ENSOARG00000015076	SMG6	74	60.906	Ovis_aries
ENSACIG00000012997	smg6	98	49.149	ENSPPAG00000043296	SMG6	72	60.388	Pan_paniscus
ENSACIG00000012997	smg6	97	49.443	ENSPTIG00000008925	SMG6	100	60.526	Panthera_tigris_altaica
ENSACIG00000012997	smg6	78	55.413	ENSPTRG00000008544	SMG6	100	60.526	Pan_troglodytes
ENSACIG00000012997	smg6	78	55.457	ENSPANG00000024588	SMG6	74	59.496	Papio_anubis
ENSACIG00000012997	smg6	72	52.314	ENSPSIG00000006660	SMG6	68	58.307	Pelodiscus_sinensis
ENSACIG00000012997	smg6	93	80.252	ENSPMGG00000000844	smg6	92	80.252	Periophthalmus_magnuspinnatus
ENSACIG00000012997	smg6	100	70.752	ENSPFOG00000012035	smg6	93	70.733	Poecilia_formosa
ENSACIG00000012997	smg6	100	71.012	ENSPLAG00000017660	smg6	93	70.798	Poecilia_latipinna
ENSACIG00000012997	smg6	100	70.882	ENSPMEG00000000258	smg6	93	70.863	Poecilia_mexicana
ENSACIG00000012997	smg6	100	70.000	ENSPREG00000010066	smg6	93	69.721	Poecilia_reticulata
ENSACIG00000012997	smg6	98	47.420	ENSPCAG00000000552	SMG6	98	46.916	Procavia_capensis
ENSACIG00000012997	smg6	74	63.958	ENSPVAG00000002159	SMG6	75	55.487	Pteropus_vampyrus
ENSACIG00000012997	smg6	100	82.589	ENSPNYG00000024151	smg6	99	84.558	Pundamilia_nyererei
ENSACIG00000012997	smg6	98	53.953	ENSPNAG00000015480	smg6	91	53.469	Pygocentrus_nattereri
ENSACIG00000012997	smg6	98	49.308	ENSRNOG00000003041	Smg6	96	65.070	Rattus_norvegicus
ENSACIG00000012997	smg6	98	49.574	ENSRROG00000030423	SMG6	100	60.714	Rhinopithecus_roxellana
ENSACIG00000012997	smg6	78	55.378	ENSSBOG00000022518	SMG6	63	57.987	Saimiri_boliviensis_boliviensis
ENSACIG00000012997	smg6	78	55.814	ENSSHAG00000010045	SMG6	73	59.619	Sarcophilus_harrisii
ENSACIG00000012997	smg6	97	54.037	ENSSFOG00015005436	smg6	87	55.290	Scleropages_formosus
ENSACIG00000012997	smg6	100	74.210	ENSSMAG00000019777	smg6	93	74.597	Scophthalmus_maximus
ENSACIG00000012997	smg6	100	78.930	ENSSDUG00000016412	smg6	93	79.253	Seriola_dumerili
ENSACIG00000012997	smg6	97	78.146	ENSSLDG00000020747	smg6	98	78.477	Seriola_lalandi_dorsalis
ENSACIG00000012997	smg6	83	52.442	ENSSPUG00000007152	SMG6	74	56.634	Sphenodon_punctatus
ENSACIG00000012997	smg6	100	80.090	ENSSPAG00000015633	smg6	93	80.672	Stegastes_partitus
ENSACIG00000012997	smg6	78	55.422	ENSSSCG00000017826	SMG6	72	60.480	Sus_scrofa
ENSACIG00000012997	smg6	71	60.592	ENSTGUG00000005836	SMG6	72	59.852	Taeniopygia_guttata
ENSACIG00000012997	smg6	97	70.528	ENSTRUG00000000358	smg6	98	69.979	Takifugu_rubripes
ENSACIG00000012997	smg6	98	69.786	ENSTNIG00000016164	smg6	93	75.259	Tetraodon_nigroviridis
ENSACIG00000012997	smg6	95	62.278	ENSTBEG00000011424	SMG6	68	62.469	Tupaia_belangeri
ENSACIG00000012997	smg6	78	55.087	ENSUAMG00000025152	SMG6	74	59.945	Ursus_americanus
ENSACIG00000012997	smg6	78	55.219	ENSUMAG00000009306	SMG6	74	60.294	Ursus_maritimus
ENSACIG00000012997	smg6	55	95.833	ENSVPAG00000000225	SMG6	58	95.833	Vicugna_pacos
ENSACIG00000012997	smg6	100	72.241	ENSXCOG00000009867	smg6	93	71.954	Xiphophorus_couchianus
ENSACIG00000012997	smg6	100	70.455	ENSXMAG00000010321	smg6	93	70.519	Xiphophorus_maculatus